EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000005791 (Gene tree)
Gene ID
394036
Gene Symbol
rpl28
Alias
rpl28l|zgc:66289
Full Name
ribosomal protein L28
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Minus strand
Length
6010 bases
Position
chr16:51883725-51889734
Accession
ZDB-GENE-040930-10
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000024189Ribosomal_L28ePF01778.174.4e-3411
ENSDARP00000145056Ribosomal_L28ePF01778.174.4e-3411
ENSDARP00000144405Ribosomal_L28ePF01778.176.1e-3411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000012055-504-ENSDARP00000024189138 (aa)-F1QFV6
ENSDART00000175435-2160-ENSDARP00000144405151 (aa)-A0A286YBP4
ENSDART00000186407-440XM_021466651ENSDARP00000145056138 (aa)XP_021322326F1QFV6
Gene Model
Click here to download ENSDARG00000005791's gene model file
Pathways
Pathway IDPathway NameSource
dre03010RibosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000005791's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000005791rpl289979.412ENSG00000108107RPL289786.567Homo_sapiens
ENSDARG00000005791rpl289980.882ENSAPOG00000023913rpl289980.882Acanthochromis_polyacanthus
ENSDARG00000005791rpl289979.412ENSAMEG00000003764RPL289979.412Ailuropoda_melanoleuca
ENSDARG00000005791rpl289980.147ENSACIG00000014369rpl289980.147Amphilophus_citrinellus
ENSDARG00000005791rpl289980.147ENSAOCG00000019874rpl2810075.000Amphiprion_ocellaris
ENSDARG00000005791rpl289980.147ENSAPEG00000020972rpl289980.147Amphiprion_percula
ENSDARG00000005791rpl289982.353ENSATEG00000013839rpl289982.353Anabas_testudineus
ENSDARG00000005791rpl289980.882ENSACAG00000015980-9980.882Anolis_carolinensis
ENSDARG00000005791rpl289761.940ENSACAG00000006100-9861.940Anolis_carolinensis
ENSDARG00000005791rpl289979.412ENSANAG00000034536RPL289786.567Aotus_nancymaae
ENSDARG00000005791rpl289981.618ENSACLG00000027917rpl289781.618Astatotilapia_calliptera
ENSDARG00000005791rpl289981.618ENSAMXG00000042541rpl289981.618Astyanax_mexicanus
ENSDARG00000005791rpl289779.851ENSBTAG00000023343RPL286777.857Bos_taurus
ENSDARG00000005791rpl288736.885WBGene00004442rpl-289036.885Caenorhabditis_elegans
ENSDARG00000005791rpl289979.412ENSCJAG00000000869RPL289979.412Callithrix_jacchus
ENSDARG00000005791rpl289980.147ENSCAFG00000002585RPL289980.147Canis_familiaris
ENSDARG00000005791rpl289980.147ENSCAFG00020015496-9980.147Canis_lupus_dingo
ENSDARG00000005791rpl289979.412ENSCAFG00020024049-9979.412Canis_lupus_dingo
ENSDARG00000005791rpl289456.923ENSCHIG00000010485-9156.923Capra_hircus
ENSDARG00000005791rpl289978.676ENSCHIG00000025540-9978.676Capra_hircus
ENSDARG00000005791rpl289956.618ENSTSYG00000036697-9056.618Carlito_syrichta
ENSDARG00000005791rpl289979.412ENSTSYG00000033853RPL289979.412Carlito_syrichta
ENSDARG00000005791rpl289952.206ENSTSYG00000035503-9952.206Carlito_syrichta
ENSDARG00000005791rpl288368.696ENSTSYG00000032922-9868.696Carlito_syrichta
ENSDARG00000005791rpl289977.941ENSCAPG00000007161-9977.941Cavia_aperea
ENSDARG00000005791rpl289976.471ENSCPOG00000023112-9976.471Cavia_porcellus
ENSDARG00000005791rpl289978.676ENSCPOG00000012833-9978.676Cavia_porcellus
ENSDARG00000005791rpl289962.500ENSCCAG00000012793-9962.500Cebus_capucinus
ENSDARG00000005791rpl289979.412ENSCCAG00000025765RPL289786.567Cebus_capucinus
ENSDARG00000005791rpl289969.853ENSCCAG00000018730-9969.853Cebus_capucinus
ENSDARG00000005791rpl289961.765ENSCCAG00000003452-9961.765Cebus_capucinus
ENSDARG00000005791rpl289855.556ENSCATG00000039353-9855.556Cercocebus_atys
ENSDARG00000005791rpl289979.412ENSCATG00000031417RPL289786.567Cercocebus_atys
ENSDARG00000005791rpl289978.676ENSCLAG00000000684RPL289978.676Chinchilla_lanigera
ENSDARG00000005791rpl289977.206ENSCSAG00000018419-9977.206Chlorocebus_sabaeus
ENSDARG00000005791rpl289980.147ENSCSAG00000001738-9980.147Chlorocebus_sabaeus
ENSDARG00000005791rpl288080.000ENSCPBG00000008298RPL286780.000Chrysemys_picta_bellii
ENSDARG00000005791rpl288857.025ENSCSAVG00000008832-9857.025Ciona_savignyi
ENSDARG00000005791rpl289854.815ENSCANG00000008828-9854.815Colobus_angolensis_palliatus
ENSDARG00000005791rpl289978.676ENSCANG00000038322RPL289786.567Colobus_angolensis_palliatus
ENSDARG00000005791rpl289977.206ENSCANG00000002437-9977.206Colobus_angolensis_palliatus
ENSDARG00000005791rpl289976.471ENSCANG00000021622-9976.471Colobus_angolensis_palliatus
ENSDARG00000005791rpl289966.912ENSCGRG00001019521-9966.912Cricetulus_griseus_chok1gshd
ENSDARG00000005791rpl289980.147ENSCGRG00001023644Rpl289980.147Cricetulus_griseus_chok1gshd
ENSDARG00000005791rpl288364.912ENSCGRG00000006958-8664.912Cricetulus_griseus_crigri
ENSDARG00000005791rpl288078.182ENSCGRG00000004471Rpl2810078.182Cricetulus_griseus_crigri
ENSDARG00000005791rpl289979.412ENSCSEG00000001312rpl289979.412Cynoglossus_semilaevis
ENSDARG00000005791rpl289979.412ENSCVAG00000022473rpl289979.412Cyprinodon_variegatus
ENSDARG00000005791rpl289979.412ENSDNOG00000044172-9979.412Dasypus_novemcinctus
ENSDARG00000005791rpl287864.493ENSDNOG00000046131RPL288664.493Dasypus_novemcinctus
ENSDARG00000005791rpl289979.412ENSDORG00000012809Rpl289979.412Dipodomys_ordii
ENSDARG00000005791rpl289443.939FBgn0035422RpL289442.647Drosophila_melanogaster
ENSDARG00000005791rpl287868.519ENSEBUG00000009129rpl288468.519Eptatretus_burgeri
ENSDARG00000005791rpl289978.676ENSEASG00005020779RPL289978.676Equus_asinus_asinus
ENSDARG00000005791rpl289978.676ENSECAG00000026938-7077.143Equus_caballus
ENSDARG00000005791rpl289977.941ENSELUG00000001730rpl289977.941Esox_lucius
ENSDARG00000005791rpl289978.676ENSFCAG00000005639-9978.676Felis_catus
ENSDARG00000005791rpl289654.887ENSFCAG00000040593-7654.887Felis_catus
ENSDARG00000005791rpl289978.676ENSFDAG00000021448RPL289978.676Fukomys_damarensis
ENSDARG00000005791rpl289980.882ENSFHEG00000007732rpl288080.882Fundulus_heteroclitus
ENSDARG00000005791rpl289980.147ENSGMOG00000015325rpl289980.147Gadus_morhua
ENSDARG00000005791rpl289979.412ENSGAFG00000012973rpl289979.412Gambusia_affinis
ENSDARG00000005791rpl289977.941ENSGACG00000016089rpl289977.941Gasterosteus_aculeatus
ENSDARG00000005791rpl289980.882ENSGAGG00000016908RPL289980.882Gopherus_agassizii
ENSDARG00000005791rpl289978.676ENSGGOG00000022653-9786.567Gorilla_gorilla
ENSDARG00000005791rpl289963.235ENSGGOG00000027685-7363.235Gorilla_gorilla
ENSDARG00000005791rpl289981.618ENSHBUG00000007390rpl289781.618Haplochromis_burtoni
ENSDARG00000005791rpl289977.941ENSHGLG00000009865RPL289977.941Heterocephalus_glaber_female
ENSDARG00000005791rpl289977.941ENSHGLG00100005407RPL289977.941Heterocephalus_glaber_male
ENSDARG00000005791rpl289980.147ENSHCOG00000003134rpl289980.147Hippocampus_comes
ENSDARG00000005791rpl289983.088ENSIPUG00000004935rpl289983.088Ictalurus_punctatus
ENSDARG00000005791rpl289978.676ENSSTOG00000008006RPL289978.676Ictidomys_tridecemlineatus
ENSDARG00000005791rpl289980.147ENSJJAG00000019841Rpl289980.147Jaculus_jaculus
ENSDARG00000005791rpl289978.676ENSKMAG00000011412rpl289978.676Kryptolebias_marmoratus
ENSDARG00000005791rpl289980.147ENSLBEG00000027857rpl289980.147Labrus_bergylta
ENSDARG00000005791rpl288060.000ENSLACG00000011783RPL289961.261Latimeria_chalumnae
ENSDARG00000005791rpl289980.882ENSLOCG00000003073rpl2810077.703Lepisosteus_oculatus
ENSDARG00000005791rpl289980.147ENSLAFG00000022257RPL289980.147Loxodonta_africana
ENSDARG00000005791rpl289979.412ENSMFAG00000043131RPL289786.567Macaca_fascicularis
ENSDARG00000005791rpl289979.412ENSMMUG00000015901RPL289786.567Macaca_mulatta
ENSDARG00000005791rpl289979.412ENSMNEG00000032714RPL289786.567Macaca_nemestrina
ENSDARG00000005791rpl289979.412ENSMLEG00000039619RPL289786.567Mandrillus_leucophaeus
ENSDARG00000005791rpl289981.618ENSMAMG00000017519rpl289981.618Mastacembelus_armatus
ENSDARG00000005791rpl289981.618ENSMZEG00005002151rpl289781.618Maylandia_zebra
ENSDARG00000005791rpl289968.382ENSMAUG00000004738-9968.382Mesocricetus_auratus
ENSDARG00000005791rpl289656.391ENSMAUG00000016592-8056.391Mesocricetus_auratus
ENSDARG00000005791rpl289980.147ENSMAUG00000021147-9980.147Mesocricetus_auratus
ENSDARG00000005791rpl289962.500ENSMAUG00000017070-9962.500Mesocricetus_auratus
ENSDARG00000005791rpl289980.147ENSMAUG00000000783-9980.147Mesocricetus_auratus
ENSDARG00000005791rpl289979.412ENSMICG00000000996RPL289979.412Microcebus_murinus
ENSDARG00000005791rpl289963.235ENSMICG00000033709-9963.235Microcebus_murinus
ENSDARG00000005791rpl289978.102ENSMOCG00000006881-9978.102Microtus_ochrogaster
ENSDARG00000005791rpl289980.147ENSMOCG00000006245-9980.147Microtus_ochrogaster
ENSDARG00000005791rpl289977.206ENSMOCG00000008075-9977.206Microtus_ochrogaster
ENSDARG00000005791rpl289978.676ENSMMOG00000004489rpl289978.676Mola_mola
ENSDARG00000005791rpl289983.088ENSMODG00000000275RPL289983.088Monodelphis_domestica
ENSDARG00000005791rpl289979.412ENSMALG00000004571rpl289979.412Monopterus_albus
ENSDARG00000005791rpl289980.147MGP_CAROLIEiJ_G0029130Rpl289980.147Mus_caroli
ENSDARG00000005791rpl289980.147ENSMUSG00000030432Rpl289980.147Mus_musculus
ENSDARG00000005791rpl289979.412MGP_PahariEiJ_G0020999Rpl289979.412Mus_pahari
ENSDARG00000005791rpl289980.147MGP_SPRETEiJ_G0030183Rpl289980.147Mus_spretus
ENSDARG00000005791rpl289980.147ENSMPUG00000007450RPL289980.147Mustela_putorius_furo
ENSDARG00000005791rpl289976.471ENSMLUG00000023198-9976.471Myotis_lucifugus
ENSDARG00000005791rpl289977.206ENSMLUG00000023789-9977.206Myotis_lucifugus
ENSDARG00000005791rpl289980.147ENSNGAG00000016459Rpl288380.147Nannospalax_galili
ENSDARG00000005791rpl289359.375ENSNGAG00000001032-9959.375Nannospalax_galili
ENSDARG00000005791rpl289981.618ENSNBRG00000006729rpl288381.618Neolamprologus_brichardi
ENSDARG00000005791rpl289755.970ENSNLEG00000029689-9755.970Nomascus_leucogenys
ENSDARG00000005791rpl289979.412ENSNLEG00000010503-9786.567Nomascus_leucogenys
ENSDARG00000005791rpl289978.676ENSOPRG00000000463-9978.676Ochotona_princeps
ENSDARG00000005791rpl289975.735ENSODEG00000019117-9975.735Octodon_degus
ENSDARG00000005791rpl289977.206ENSODEG00000020377-9977.206Octodon_degus
ENSDARG00000005791rpl289977.941ENSODEG00000019864-9977.941Octodon_degus
ENSDARG00000005791rpl289978.676ENSODEG00000010391-9978.676Octodon_degus
ENSDARG00000005791rpl289981.618ENSONIG00000007486rpl289981.618Oreochromis_niloticus
ENSDARG00000005791rpl289978.676ENSOCUG00000027112-9978.676Oryctolagus_cuniculus
ENSDARG00000005791rpl289972.993ENSOCUG00000027875-9972.993Oryctolagus_cuniculus
ENSDARG00000005791rpl289981.618ENSORLG00000005108rpl289981.618Oryzias_latipes
ENSDARG00000005791rpl289981.618ENSORLG00020007182rpl289981.618Oryzias_latipes_hni
ENSDARG00000005791rpl289981.618ENSORLG00015013944rpl289981.618Oryzias_latipes_hsok
ENSDARG00000005791rpl289981.618ENSOMEG00000009716rpl289981.618Oryzias_melastigma
ENSDARG00000005791rpl289979.412ENSOGAG00000025533RPL289979.412Otolemur_garnettii
ENSDARG00000005791rpl289979.412ENSOARG00000001428RPL289979.412Ovis_aries
ENSDARG00000005791rpl289962.500ENSPPAG00000034138-9962.500Pan_paniscus
ENSDARG00000005791rpl289979.412ENSPPAG00000038000-9786.567Pan_paniscus
ENSDARG00000005791rpl289955.147ENSPPAG00000032901-9955.147Pan_paniscus
ENSDARG00000005791rpl289978.676ENSPPRG00000012962-9978.676Panthera_pardus
ENSDARG00000005791rpl289952.941ENSPPRG00000012498-9952.941Panthera_pardus
ENSDARG00000005791rpl289854.348ENSPPRG00000013998-8554.348Panthera_pardus
ENSDARG00000005791rpl289978.676ENSPTIG00000011191-9978.676Panthera_tigris_altaica
ENSDARG00000005791rpl289962.500ENSPTRG00000043492-9962.500Pan_troglodytes
ENSDARG00000005791rpl289979.412ENSPTRG00000011505RPL289979.412Pan_troglodytes
ENSDARG00000005791rpl289959.559ENSPTRG00000043676-9959.559Pan_troglodytes
ENSDARG00000005791rpl289979.412ENSPANG00000029716RPL289786.567Papio_anubis
ENSDARG00000005791rpl289884.444ENSPKIG00000014698rpl289984.444Paramormyrops_kingsleyae
ENSDARG00000005791rpl287977.064ENSPSIG00000015206RPL288477.064Pelodiscus_sinensis
ENSDARG00000005791rpl289980.147ENSPMGG00000004586rpl289980.147Periophthalmus_magnuspinnatus
ENSDARG00000005791rpl289972.794ENSPEMG00000013352-9972.794Peromyscus_maniculatus_bairdii
ENSDARG00000005791rpl289980.147ENSPEMG00000011755Rpl289980.147Peromyscus_maniculatus_bairdii
ENSDARG00000005791rpl289969.853ENSPMAG00000008617rpl289769.853Petromyzon_marinus
ENSDARG00000005791rpl289175.397ENSPCIG00000018601-9575.397Phascolarctos_cinereus
ENSDARG00000005791rpl289979.412ENSPFOG00000002206rpl289979.412Poecilia_formosa
ENSDARG00000005791rpl289979.412ENSPLAG00000003206rpl289979.412Poecilia_latipinna
ENSDARG00000005791rpl289979.412ENSPMEG00000000595rpl289979.412Poecilia_mexicana
ENSDARG00000005791rpl289979.412ENSPREG00000002015rpl289979.412Poecilia_reticulata
ENSDARG00000005791rpl289979.412ENSPPYG00000010417-9979.412Pongo_abelii
ENSDARG00000005791rpl287471.569ENSPPYG00000029517-7671.569Pongo_abelii
ENSDARG00000005791rpl289773.134ENSPCOG00000025957-9873.134Propithecus_coquereli
ENSDARG00000005791rpl289175.200ENSPCOG00000014236-8979.487Propithecus_coquereli
ENSDARG00000005791rpl289979.412ENSPCOG00000017000RPL289786.567Propithecus_coquereli
ENSDARG00000005791rpl289977.206ENSPCOG00000007456-9977.206Propithecus_coquereli
ENSDARG00000005791rpl289977.206ENSPVAG00000007315RPL289977.206Pteropus_vampyrus
ENSDARG00000005791rpl289980.882ENSPNYG00000004757rpl289980.882Pundamilia_nyererei
ENSDARG00000005791rpl2810079.710ENSPNAG00000003547rpl289379.710Pygocentrus_nattereri
ENSDARG00000005791rpl289980.147ENSRNOG00000017127Rpl289980.147Rattus_norvegicus
ENSDARG00000005791rpl289572.464ENSRNOG00000009240AABR07016623.19672.464Rattus_norvegicus
ENSDARG00000005791rpl289975.735ENSRNOG00000061441AABR07071935.19975.735Rattus_norvegicus
ENSDARG00000005791rpl289978.676ENSRNOG00000037673AABR07071891.29978.676Rattus_norvegicus
ENSDARG00000005791rpl289977.941ENSRBIG00000003677-9977.941Rhinopithecus_bieti
ENSDARG00000005791rpl289979.412ENSRBIG00000034637RPL289786.567Rhinopithecus_bieti
ENSDARG00000005791rpl289979.412ENSRROG00000028904RPL289786.567Rhinopithecus_roxellana
ENSDARG00000005791rpl289953.676ENSRROG00000030502-9953.676Rhinopithecus_roxellana
ENSDARG00000005791rpl289979.412ENSSBOG00000028286RPL289786.567Saimiri_boliviensis_boliviensis
ENSDARG00000005791rpl289752.985ENSSBOG00000034324-9752.985Saimiri_boliviensis_boliviensis
ENSDARG00000005791rpl285470.667ENSSBOG00000022635-8070.667Saimiri_boliviensis_boliviensis
ENSDARG00000005791rpl289980.882ENSSFOG00015001292rpl289980.882Scleropages_formosus
ENSDARG00000005791rpl289981.618ENSSFOG00015012801-9981.618Scleropages_formosus
ENSDARG00000005791rpl289980.882ENSSMAG00000008756rpl289980.882Scophthalmus_maximus
ENSDARG00000005791rpl289981.618ENSSDUG00000015127rpl289981.618Seriola_dumerili
ENSDARG00000005791rpl288135.965ENSSLDG00000009395-8835.965Seriola_lalandi_dorsalis
ENSDARG00000005791rpl289980.882ENSSLDG00000000414rpl289980.882Seriola_lalandi_dorsalis
ENSDARG00000005791rpl286073.494ENSSLDG00000006440-8773.494Seriola_lalandi_dorsalis
ENSDARG00000005791rpl289969.118ENSSARG00000009741RPL289969.118Sorex_araneus
ENSDARG00000005791rpl289977.206ENSSPUG00000010390RPL289977.206Sphenodon_punctatus
ENSDARG00000005791rpl289981.618ENSSPAG00000015122rpl287776.510Stegastes_partitus
ENSDARG00000005791rpl286473.864ENSSSCG00000038865-6478.571Sus_scrofa
ENSDARG00000005791rpl289754.412ENSSSCG00000030430-9455.224Sus_scrofa
ENSDARG00000005791rpl289977.941ENSSSCG00000039460-9977.941Sus_scrofa
ENSDARG00000005791rpl289551.908ENSSSCG00000039543-8851.908Sus_scrofa
ENSDARG00000005791rpl289952.857ENSSSCG00000040515-7952.857Sus_scrofa
ENSDARG00000005791rpl289980.882ENSTRUG00000025383rpl289980.882Takifugu_rubripes
ENSDARG00000005791rpl289980.882ENSTNIG00000002577rpl289980.882Tetraodon_nigroviridis
ENSDARG00000005791rpl289979.412ENSTTRG00000002428RPL289979.412Tursiops_truncatus
ENSDARG00000005791rpl289979.412ENSUAMG00000017635RPL289979.412Ursus_americanus
ENSDARG00000005791rpl288760.000ENSUAMG00000003339-9460.000Ursus_americanus
ENSDARG00000005791rpl289357.031ENSUAMG00000002452-9557.031Ursus_americanus
ENSDARG00000005791rpl289749.254ENSUAMG00000023977-8149.254Ursus_americanus
ENSDARG00000005791rpl288077.273ENSUMAG00000024630-8777.273Ursus_maritimus
ENSDARG00000005791rpl288760.000ENSUMAG00000006441-7560.000Ursus_maritimus
ENSDARG00000005791rpl289979.412ENSXETG00000000132rpl289979.412Xenopus_tropicalis
ENSDARG00000005791rpl289977.206ENSXCOG00000001554rpl289977.206Xiphophorus_couchianus
ENSDARG00000005791rpl289977.941ENSXMAG00000005190rpl289977.941Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003735structural constituent of ribosome-IEAFunction
GO:0005840ribosome-IEAComponent
GO:0006412translation-IEAProcess
GO:0022625cytosolic large ribosomal subunit21873635.IBAComponent
GO:0043009chordate embryonic development17183665.IMPProcess

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