EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000005945 (Gene tree)
Gene ID: 436946
Gene Symbol: sart1
Alias: zgc:91927
Full Name: spliceosome associated factor 1%2C recruiter of U4/U6.U5 tri-snRNP
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 22020 bases
Position: chr21:27302752-27324771
Accession: ZDB-GENE-040718-422
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000002453	SART-1	PF03343.13	4e-147	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000012855	-	2788	-	ENSDARP00000002453	777 (aa)	-	Q6DG11

Gene Model

Click here to download ENSDARG00000005945's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000005945's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000005945	sart1	100	78.382	ENSAPOG00000017256	sart1	95	80.350	Acanthochromis_polyacanthus
ENSDARG00000005945	sart1	100	79.310	ENSAOCG00000002873	sart1	95	80.485	Amphiprion_ocellaris
ENSDARG00000005945	sart1	100	78.927	ENSAPEG00000002705	sart1	92	81.755	Amphiprion_percula
ENSDARG00000005945	sart1	100	78.233	ENSATEG00000010608	sart1	94	79.780	Anabas_testudineus
ENSDARG00000005945	sart1	100	82.143	ENSAMXG00000007275	sart1	92	84.276	Astyanax_mexicanus
ENSDARG00000005945	sart1	100	77.022	ENSCSEG00000001968	sart1	93	77.886	Cynoglossus_semilaevis
ENSDARG00000005945	sart1	100	77.175	ENSELUG00000015791	sart1	92	77.112	Esox_lucius
ENSDARG00000005945	sart1	100	79.231	ENSMAMG00000012486	sart1	96	79.494	Mastacembelus_armatus
ENSDARG00000005945	sart1	100	77.664	ENSMALG00000018262	sart1	96	77.733	Monopterus_albus
ENSDARG00000005945	sart1	100	76.523	ENSPKIG00000023523	sart1	92	76.552	Paramormyrops_kingsleyae
ENSDARG00000005945	sart1	100	79.873	ENSPNAG00000002187	sart1	92	82.069	Pygocentrus_nattereri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000481	maturation of 5S rRNA	21873635.	IBA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component