EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000005980 (Gene tree)
Gene ID: 394143
Gene Symbol: sfswap
Alias: sfrs8|srsf8|zgc:56184
Full Name: splicing factor SWAP
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 156956 bases
Position: chr21:15125497-15282452
Accession: ZDB-GENE-040426-931
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000121684	DRY_EERY	PF09750.9	2e-30	1	1
ENSDARP00000121684	Surp	PF01805.20	2.1e-28	1	2
ENSDARP00000121684	Surp	PF01805.20	2.1e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000143113	-	3660	XM_009295295	ENSDARP00000121684	958 (aa)	XP_009293570	F1Q5L3
ENSDART00000141809	-	1206	-	ENSDARP00000115086	276 (aa)	-	F1Q7E8

Gene Model

Click here to download ENSDARG00000005980's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000005980's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000005980	sfswap	99	54.073	ENSG00000061936	SFSWAP	89	67.593	Homo_sapiens
ENSDARG00000005980	sfswap	73	68.873	ENSAPOG00000005784	sfswap	71	81.395	Acanthochromis_polyacanthus
ENSDARG00000005980	sfswap	99	53.575	ENSAMEG00000013818	SFSWAP	99	55.411	Ailuropoda_melanoleuca
ENSDARG00000005980	sfswap	73	69.058	ENSAOCG00000016469	sfswap	71	70.014	Amphiprion_ocellaris
ENSDARG00000005980	sfswap	73	69.198	ENSAPEG00000004965	sfswap	71	69.944	Amphiprion_percula
ENSDARG00000005980	sfswap	75	67.867	ENSATEG00000021053	sfswap	76	68.414	Anabas_testudineus
ENSDARG00000005980	sfswap	50	49.149	ENSAPLG00000013808	SFSWAP	73	61.749	Anas_platyrhynchos
ENSDARG00000005980	sfswap	94	54.057	ENSACAG00000007220	SFSWAP	99	54.410	Anolis_carolinensis
ENSDARG00000005980	sfswap	100	55.620	ENSANAG00000001518	SFSWAP	99	56.453	Aotus_nancymaae
ENSDARG00000005980	sfswap	73	67.416	ENSACLG00000020159	sfswap	74	69.275	Astatotilapia_calliptera
ENSDARG00000005980	sfswap	77	72.715	ENSAMXG00000008657	sfswap	99	70.648	Astyanax_mexicanus
ENSDARG00000005980	sfswap	99	55.020	ENSBTAG00000000439	SFSWAP	99	55.779	Bos_taurus
ENSDARG00000005980	sfswap	100	55.447	ENSCJAG00000003613	SFSWAP	81	59.923	Callithrix_jacchus
ENSDARG00000005980	sfswap	99	55.812	ENSCAFG00000006625	SFSWAP	99	56.513	Canis_familiaris
ENSDARG00000005980	sfswap	88	50.824	ENSCAFG00020011254	SFSWAP	99	52.324	Canis_lupus_dingo
ENSDARG00000005980	sfswap	99	54.931	ENSCHIG00000008838	SFSWAP	99	55.980	Capra_hircus
ENSDARG00000005980	sfswap	100	52.430	ENSTSYG00000010303	SFSWAP	77	60.649	Carlito_syrichta
ENSDARG00000005980	sfswap	50	53.096	ENSCAPG00000004394	SFSWAP	95	55.460	Cavia_aperea
ENSDARG00000005980	sfswap	50	53.096	ENSCPOG00000005280	SFSWAP	99	55.368	Cavia_porcellus
ENSDARG00000005980	sfswap	100	54.748	ENSCCAG00000037255	SFSWAP	99	55.621	Cebus_capucinus
ENSDARG00000005980	sfswap	100	54.785	ENSCATG00000031094	SFSWAP	99	56.151	Cercocebus_atys
ENSDARG00000005980	sfswap	99	55.665	ENSCLAG00000008380	SFSWAP	99	55.237	Chinchilla_lanigera
ENSDARG00000005980	sfswap	100	54.688	ENSCSAG00000001884	SFSWAP	99	56.052	Chlorocebus_sabaeus
ENSDARG00000005980	sfswap	90	59.916	ENSCHOG00000003578	SFSWAP	92	59.244	Choloepus_hoffmanni
ENSDARG00000005980	sfswap	97	56.193	ENSCPBG00000024757	SFSWAP	69	62.011	Chrysemys_picta_bellii
ENSDARG00000005980	sfswap	100	54.688	ENSCANG00000036501	SFSWAP	99	56.052	Colobus_angolensis_palliatus
ENSDARG00000005980	sfswap	72	67.954	ENSCSEG00000003773	sfswap	70	67.092	Cynoglossus_semilaevis
ENSDARG00000005980	sfswap	100	52.266	ENSDNOG00000018742	SFSWAP	99	52.553	Dasypus_novemcinctus
ENSDARG00000005980	sfswap	97	50.254	ENSDORG00000010352	Sfswap	98	50.970	Dipodomys_ordii
ENSDARG00000005980	sfswap	52	47.843	FBgn0003638	su(w[a])	56	58.427	Drosophila_melanogaster
ENSDARG00000005980	sfswap	86	47.581	ENSETEG00000016657	-	61	97.727	Echinops_telfairi
ENSDARG00000005980	sfswap	74	44.000	ENSEBUG00000016748	SFSWAP	69	42.712	Eptatretus_burgeri
ENSDARG00000005980	sfswap	99	55.403	ENSEASG00005016502	SFSWAP	99	55.700	Equus_asinus_asinus
ENSDARG00000005980	sfswap	98	55.106	ENSECAG00000007657	SFSWAP	98	55.158	Equus_caballus
ENSDARG00000005980	sfswap	79	55.636	ENSEEUG00000001713	SFSWAP	99	47.374	Erinaceus_europaeus
ENSDARG00000005980	sfswap	100	62.586	ENSELUG00000010942	sfswap	100	63.132	Esox_lucius
ENSDARG00000005980	sfswap	99	56.621	ENSFCAG00000010778	SFSWAP	99	56.107	Felis_catus
ENSDARG00000005980	sfswap	98	57.071	ENSFALG00000009577	SFSWAP	95	56.998	Ficedula_albicollis
ENSDARG00000005980	sfswap	99	56.238	ENSFDAG00000017235	SFSWAP	99	54.257	Fukomys_damarensis
ENSDARG00000005980	sfswap	50	49.425	ENSGALG00000002487	SFSWAP	73	62.055	Gallus_gallus
ENSDARG00000005980	sfswap	99	62.641	ENSGAFG00000006272	sfswap	74	69.132	Gambusia_affinis
ENSDARG00000005980	sfswap	86	81.818	ENSGACG00000017647	sfswap	94	62.687	Gasterosteus_aculeatus
ENSDARG00000005980	sfswap	100	54.227	ENSGGOG00000014877	SFSWAP	99	56.059	Gorilla_gorilla
ENSDARG00000005980	sfswap	73	67.697	ENSHBUG00000005629	sfswap	73	69.559	Haplochromis_burtoni
ENSDARG00000005980	sfswap	50	52.462	ENSHGLG00000019216	SFSWAP	99	55.567	Heterocephalus_glaber_female
ENSDARG00000005980	sfswap	50	52.462	ENSHGLG00100019350	SFSWAP	98	55.723	Heterocephalus_glaber_male
ENSDARG00000005980	sfswap	73	65.966	ENSHCOG00000009475	sfswap	72	66.527	Hippocampus_comes
ENSDARG00000005980	sfswap	100	69.270	ENSIPUG00000010598	sfswap	100	67.861	Ictalurus_punctatus
ENSDARG00000005980	sfswap	91	68.101	ENSSTOG00000000773	SFSWAP	100	55.545	Ictidomys_tridecemlineatus
ENSDARG00000005980	sfswap	100	56.582	ENSJJAG00000006609	Sfswap	100	55.357	Jaculus_jaculus
ENSDARG00000005980	sfswap	73	69.577	ENSKMAG00000013168	sfswap	71	67.177	Kryptolebias_marmoratus
ENSDARG00000005980	sfswap	73	69.633	ENSLBEG00000010239	sfswap	76	68.785	Labrus_bergylta
ENSDARG00000005980	sfswap	71	57.939	ENSLACG00000018678	SFSWAP	96	53.996	Latimeria_chalumnae
ENSDARG00000005980	sfswap	50	51.521	ENSLAFG00000014462	SFSWAP	100	55.202	Loxodonta_africana
ENSDARG00000005980	sfswap	100	53.265	ENSMFAG00000037352	SFSWAP	99	52.707	Macaca_fascicularis
ENSDARG00000005980	sfswap	100	56.262	ENSMMUG00000020343	SFSWAP	99	56.095	Macaca_mulatta
ENSDARG00000005980	sfswap	100	56.262	ENSMNEG00000041002	SFSWAP	99	56.095	Macaca_nemestrina
ENSDARG00000005980	sfswap	100	53.816	ENSMLEG00000035728	SFSWAP	100	54.752	Mandrillus_leucophaeus
ENSDARG00000005980	sfswap	73	69.263	ENSMAMG00000006631	sfswap	72	68.000	Mastacembelus_armatus
ENSDARG00000005980	sfswap	73	67.416	ENSMZEG00005017834	SFSWAP	70	69.275	Maylandia_zebra
ENSDARG00000005980	sfswap	97	53.630	ENSMGAG00000002191	SFSWAP	97	53.547	Meleagris_gallopavo
ENSDARG00000005980	sfswap	100	53.749	ENSMICG00000004465	SFSWAP	99	56.418	Microcebus_murinus
ENSDARG00000005980	sfswap	84	59.517	ENSMODG00000015581	SFSWAP	96	53.756	Monodelphis_domestica
ENSDARG00000005980	sfswap	73	67.967	ENSMALG00000012603	sfswap	91	68.547	Monopterus_albus
ENSDARG00000005980	sfswap	99	55.634	ENSMPUG00000002218	SFSWAP	99	56.740	Mustela_putorius_furo
ENSDARG00000005980	sfswap	89	52.110	ENSMLUG00000011296	SFSWAP	82	58.312	Myotis_lucifugus
ENSDARG00000005980	sfswap	67	65.906	ENSNBRG00000020857	sfswap	68	68.274	Neolamprologus_brichardi
ENSDARG00000005980	sfswap	98	54.851	ENSNLEG00000008386	SFSWAP	99	55.411	Nomascus_leucogenys
ENSDARG00000005980	sfswap	66	83.019	ENSMEUG00000009556	-	73	73.333	Notamacropus_eugenii
ENSDARG00000005980	sfswap	66	64.179	ENSOPRG00000006983	-	75	62.695	Ochotona_princeps
ENSDARG00000005980	sfswap	99	54.842	ENSODEG00000008020	SFSWAP	98	56.181	Octodon_degus
ENSDARG00000005980	sfswap	72	65.289	ENSONIG00000003757	sfswap	85	65.522	Oreochromis_niloticus
ENSDARG00000005980	sfswap	50	52.290	ENSOCUG00000002165	SFSWAP	100	54.457	Oryctolagus_cuniculus
ENSDARG00000005980	sfswap	73	68.980	ENSORLG00000010983	sfswap	72	67.842	Oryzias_latipes
ENSDARG00000005980	sfswap	73	68.839	ENSORLG00020010779	sfswap	71	67.273	Oryzias_latipes_hni
ENSDARG00000005980	sfswap	73	68.741	ENSORLG00015023093	sfswap	72	67.465	Oryzias_latipes_hsok
ENSDARG00000005980	sfswap	73	68.697	ENSOMEG00000022065	sfswap	71	68.776	Oryzias_melastigma
ENSDARG00000005980	sfswap	90	54.615	ENSOGAG00000016724	SFSWAP	99	55.776	Otolemur_garnettii
ENSDARG00000005980	sfswap	99	54.990	ENSOARG00000014314	SFSWAP	99	55.466	Ovis_aries
ENSDARG00000005980	sfswap	99	54.563	ENSPPAG00000036706	SFSWAP	99	55.996	Pan_paniscus
ENSDARG00000005980	sfswap	99	53.416	ENSPPRG00000017318	SFSWAP	74	57.143	Panthera_pardus
ENSDARG00000005980	sfswap	98	49.394	ENSPTIG00000004304	SFSWAP	96	65.075	Panthera_tigris_altaica
ENSDARG00000005980	sfswap	99	54.563	ENSPTRG00000005640	SFSWAP	99	55.996	Pan_troglodytes
ENSDARG00000005980	sfswap	100	54.785	ENSPANG00000019737	SFSWAP	99	56.151	Papio_anubis
ENSDARG00000005980	sfswap	73	66.574	ENSPKIG00000008327	sfswap	75	66.804	Paramormyrops_kingsleyae
ENSDARG00000005980	sfswap	73	68.706	ENSPFOG00000019657	sfswap	72	68.436	Poecilia_formosa
ENSDARG00000005980	sfswap	73	68.848	ENSPLAG00000008513	sfswap	72	68.575	Poecilia_latipinna
ENSDARG00000005980	sfswap	73	68.706	ENSPMEG00000008716	sfswap	72	68.436	Poecilia_mexicana
ENSDARG00000005980	sfswap	73	68.990	ENSPREG00000006692	sfswap	72	67.877	Poecilia_reticulata
ENSDARG00000005980	sfswap	99	53.308	ENSPPYG00000005129	SFSWAP	100	55.744	Pongo_abelii
ENSDARG00000005980	sfswap	100	54.510	ENSPCOG00000023786	SFSWAP	100	56.182	Propithecus_coquereli
ENSDARG00000005980	sfswap	88	59.665	ENSPVAG00000014918	SFSWAP	85	63.451	Pteropus_vampyrus
ENSDARG00000005980	sfswap	73	67.697	ENSPNYG00000012660	sfswap	69	68.990	Pundamilia_nyererei
ENSDARG00000005980	sfswap	100	73.873	ENSPNAG00000007073	sfswap	100	72.467	Pygocentrus_nattereri
ENSDARG00000005980	sfswap	100	54.900	ENSRBIG00000036330	SFSWAP	99	54.192	Rhinopithecus_bieti
ENSDARG00000005980	sfswap	100	54.244	ENSRROG00000032001	SFSWAP	99	56.052	Rhinopithecus_roxellana
ENSDARG00000005980	sfswap	100	54.927	ENSSBOG00000026217	SFSWAP	99	55.809	Saimiri_boliviensis_boliviensis
ENSDARG00000005980	sfswap	84	70.871	ENSSHAG00000014232	SFSWAP	99	55.202	Sarcophilus_harrisii
ENSDARG00000005980	sfswap	97	61.411	ENSSFOG00015000766	sfswap	99	59.553	Scleropages_formosus
ENSDARG00000005980	sfswap	73	67.511	ENSSMAG00000018718	sfswap	71	68.118	Scophthalmus_maximus
ENSDARG00000005980	sfswap	73	69.024	ENSSDUG00000021680	sfswap	70	70.056	Seriola_dumerili
ENSDARG00000005980	sfswap	73	69.024	ENSSLDG00000010835	sfswap	69	69.915	Seriola_lalandi_dorsalis
ENSDARG00000005980	sfswap	73	69.231	ENSSARG00000000424	SFSWAP	80	72.131	Sorex_araneus
ENSDARG00000005980	sfswap	73	70.663	ENSSPAG00000014310	sfswap	85	70.464	Stegastes_partitus
ENSDARG00000005980	sfswap	99	54.698	ENSSSCG00000009744	SFSWAP	99	55.900	Sus_scrofa
ENSDARG00000005980	sfswap	98	55.814	ENSTGUG00000004623	SFSWAP	99	56.053	Taeniopygia_guttata
ENSDARG00000005980	sfswap	88	67.595	ENSTTRG00000013478	SFSWAP	93	76.744	Tursiops_truncatus
ENSDARG00000005980	sfswap	99	55.488	ENSUAMG00000016807	SFSWAP	99	56.613	Ursus_americanus
ENSDARG00000005980	sfswap	78	68.378	ENSUMAG00000002957	SFSWAP	80	64.356	Ursus_maritimus
ENSDARG00000005980	sfswap	51	71.429	ENSVPAG00000010479	-	63	70.370	Vicugna_pacos
ENSDARG00000005980	sfswap	100	55.777	ENSVVUG00000010753	SFSWAP	100	56.474	Vulpes_vulpes
ENSDARG00000005980	sfswap	97	49.758	ENSXETG00000009350	sfswap	97	56.460	Xenopus_tropicalis
ENSDARG00000005980	sfswap	73	68.661	ENSXMAG00000009020	sfswap	72	69.417	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000395	mRNA 5'-splice site recognition	21873635.	IBA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0006396	RNA processing	-	IEA	Process