EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000006219 (Gene tree)
Gene ID: 321897
Gene Symbol: gnl3
Alias: id:ibd2914|nstm|nucleostemin|wu:fb38a04|wu:fc55d07|zgc:123093
Full Name: guanine nucleotide binding protein-like 3 (nucleolar)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 11541 bases
Position: chr11:3959495-3971035
Accession: ZDB-GENE-030131-616
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000109517	GN3L_Grn1	PF08701.11	5.4e-21	1	1
ENSDARP00000109517	MMR_HSR1	PF01926.23	3.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000122953	-	2090	-	ENSDARP00000109517	561 (aa)	-	F1QGN5
ENSDART00000122833	-	773	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000006219's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000006219's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000006219	gnl3	76	40.278	ENSDARG00000020595	gnl3l	76	39.627

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000006219	gnl3	100	44.112	ENSG00000163938	GNL3	100	52.941	Homo_sapiens
ENSDARG00000006219	gnl3	99	54.804	ENSAPOG00000004048	gnl3	99	55.872	Acanthochromis_polyacanthus
ENSDARG00000006219	gnl3	100	42.531	ENSAMEG00000008456	GNL3	100	42.504	Ailuropoda_melanoleuca
ENSDARG00000006219	gnl3	99	56.684	ENSACIG00000000545	gnl3	99	55.971	Amphilophus_citrinellus
ENSDARG00000006219	gnl3	99	54.982	ENSAOCG00000012879	gnl3	99	55.160	Amphiprion_ocellaris
ENSDARG00000006219	gnl3	99	56.228	ENSAPEG00000006146	gnl3	99	56.228	Amphiprion_percula
ENSDARG00000006219	gnl3	99	56.283	ENSATEG00000024242	gnl3	99	56.814	Anabas_testudineus
ENSDARG00000006219	gnl3	96	42.779	ENSAPLG00000005171	GNL3	100	42.463	Anas_platyrhynchos
ENSDARG00000006219	gnl3	100	48.592	ENSACAG00000007357	GNL3	100	48.854	Anolis_carolinensis
ENSDARG00000006219	gnl3	100	44.523	ENSANAG00000033209	GNL3	100	44.326	Aotus_nancymaae
ENSDARG00000006219	gnl3	99	56.328	ENSACLG00000007381	gnl3	99	56.328	Astatotilapia_calliptera
ENSDARG00000006219	gnl3	100	60.211	ENSAMXG00000020880	gnl3	100	60.105	Astyanax_mexicanus
ENSDARG00000006219	gnl3	100	44.346	ENSBTAG00000014549	GNL3	100	44.834	Bos_taurus
ENSDARG00000006219	gnl3	100	43.640	ENSCJAG00000044256	-	100	43.440	Callithrix_jacchus
ENSDARG00000006219	gnl3	100	43.640	ENSCJAG00000006864	-	100	43.440	Callithrix_jacchus
ENSDARG00000006219	gnl3	86	46.392	ENSCAFG00000009004	GNL3	100	43.085	Canis_familiaris
ENSDARG00000006219	gnl3	86	46.598	ENSCAFG00020002613	GNL3	96	44.747	Canis_lupus_dingo
ENSDARG00000006219	gnl3	100	44.779	ENSCHIG00000022181	GNL3	100	44.385	Capra_hircus
ENSDARG00000006219	gnl3	100	43.540	ENSTSYG00000006851	GNL3	100	43.517	Carlito_syrichta
ENSDARG00000006219	gnl3	85	46.570	ENSCPOG00000000282	GNL3	88	46.042	Cavia_porcellus
ENSDARG00000006219	gnl3	100	45.133	ENSCCAG00000033281	GNL3	100	44.583	Cebus_capucinus
ENSDARG00000006219	gnl3	100	43.872	ENSCATG00000040886	GNL3	100	43.672	Cercocebus_atys
ENSDARG00000006219	gnl3	100	43.717	ENSCLAG00000010109	-	100	43.440	Chinchilla_lanigera
ENSDARG00000006219	gnl3	100	43.009	ENSCSAG00000013315	GNL3	100	42.806	Chlorocebus_sabaeus
ENSDARG00000006219	gnl3	100	41.391	ENSCHOG00000002726	GNL3	100	41.373	Choloepus_hoffmanni
ENSDARG00000006219	gnl3	76	48.165	ENSCPBG00000018330	-	95	48.073	Chrysemys_picta_bellii
ENSDARG00000006219	gnl3	98	43.141	ENSCANG00000039969	GNL3	100	42.754	Colobus_angolensis_palliatus
ENSDARG00000006219	gnl3	100	42.982	ENSCGRG00001020950	Gnl3	100	42.730	Cricetulus_griseus_chok1gshd
ENSDARG00000006219	gnl3	100	42.982	ENSCGRG00000015225	Gnl3	100	42.730	Cricetulus_griseus_crigri
ENSDARG00000006219	gnl3	99	54.107	ENSCSEG00000005009	gnl3	100	52.941	Cynoglossus_semilaevis
ENSDARG00000006219	gnl3	99	54.885	ENSCVAG00000010679	gnl3	99	54.885	Cyprinodon_variegatus
ENSDARG00000006219	gnl3	100	43.463	ENSDNOG00000001037	GNL3	100	43.640	Dasypus_novemcinctus
ENSDARG00000006219	gnl3	100	42.246	ENSDORG00000000674	Gnl3	100	42.424	Dipodomys_ordii
ENSDARG00000006219	gnl3	100	38.421	ENSETEG00000016534	-	88	77.465	Echinops_telfairi
ENSDARG00000006219	gnl3	100	44.092	ENSEASG00005014636	GNL3	100	44.071	Equus_asinus_asinus
ENSDARG00000006219	gnl3	100	43.706	ENSECAG00000014850	GNL3	100	43.684	Equus_caballus
ENSDARG00000006219	gnl3	99	41.756	ENSEEUG00000004427	GNL3	100	41.756	Erinaceus_europaeus
ENSDARG00000006219	gnl3	99	59.036	ENSELUG00000008767	gnl3	99	58.103	Esox_lucius
ENSDARG00000006219	gnl3	100	42.958	ENSFCAG00000015719	GNL3	100	42.580	Felis_catus
ENSDARG00000006219	gnl3	99	46.221	ENSFALG00000008957	GNL3	99	45.423	Ficedula_albicollis
ENSDARG00000006219	gnl3	100	44.718	ENSFDAG00000020679	GNL3	100	43.684	Fukomys_damarensis
ENSDARG00000006219	gnl3	99	56.228	ENSFHEG00000020897	gnl3	99	56.228	Fundulus_heteroclitus
ENSDARG00000006219	gnl3	99	50.355	ENSGMOG00000001745	gnl3	99	48.252	Gadus_morhua
ENSDARG00000006219	gnl3	100	43.322	ENSGALG00000001613	GNL3	100	41.709	Gallus_gallus
ENSDARG00000006219	gnl3	99	47.397	ENSGAFG00000007184	gnl3	99	47.302	Gambusia_affinis
ENSDARG00000006219	gnl3	99	54.352	ENSGACG00000000309	gnl3	99	54.529	Gasterosteus_aculeatus
ENSDARG00000006219	gnl3	80	46.467	ENSGAGG00000021579	-	97	47.241	Gopherus_agassizii
ENSDARG00000006219	gnl3	100	44.149	ENSGGOG00000011444	GNL3	100	43.772	Gorilla_gorilla
ENSDARG00000006219	gnl3	99	56.863	ENSHBUG00000001340	gnl3	99	58.289	Haplochromis_burtoni
ENSDARG00000006219	gnl3	99	43.509	ENSHGLG00000018299	GNL3	100	43.009	Heterocephalus_glaber_female
ENSDARG00000006219	gnl3	99	51.839	ENSHCOG00000009446	gnl3	99	50.266	Hippocampus_comes
ENSDARG00000006219	gnl3	99	58.273	ENSIPUG00000023677	gnl3	92	65.684	Ictalurus_punctatus
ENSDARG00000006219	gnl3	100	43.009	ENSSTOG00000000356	GNL3	100	43.794	Ictidomys_tridecemlineatus
ENSDARG00000006219	gnl3	99	45.648	ENSJJAG00000021993	Gnl3	100	45.000	Jaculus_jaculus
ENSDARG00000006219	gnl3	99	55.062	ENSKMAG00000005965	gnl3	99	53.464	Kryptolebias_marmoratus
ENSDARG00000006219	gnl3	99	54.885	ENSLBEG00000011394	gnl3	99	54.545	Labrus_bergylta
ENSDARG00000006219	gnl3	84	54.219	ENSLACG00000001259	GNL3	99	48.682	Latimeria_chalumnae
ENSDARG00000006219	gnl3	99	52.021	ENSLOCG00000010542	gnl3	99	51.852	Lepisosteus_oculatus
ENSDARG00000006219	gnl3	100	43.007	ENSLAFG00000016056	GNL3	100	42.655	Loxodonta_africana
ENSDARG00000006219	gnl3	100	44.227	ENSMFAG00000000613	GNL3	100	44.029	Macaca_fascicularis
ENSDARG00000006219	gnl3	98	42.831	ENSMMUG00000012511	GNL3	100	42.623	Macaca_mulatta
ENSDARG00000006219	gnl3	98	43.013	ENSMNEG00000041979	GNL3	100	42.805	Macaca_nemestrina
ENSDARG00000006219	gnl3	100	44.050	ENSMLEG00000027696	GNL3	100	43.850	Mandrillus_leucophaeus
ENSDARG00000006219	gnl3	99	57.041	ENSMAMG00000008904	gnl3	99	56.506	Mastacembelus_armatus
ENSDARG00000006219	gnl3	99	57.754	ENSMZEG00005014857	gnl3	99	58.467	Maylandia_zebra
ENSDARG00000006219	gnl3	84	56.904	ENSMZEG00005014957	-	98	52.286	Maylandia_zebra
ENSDARG00000006219	gnl3	78	38.852	ENSMGAG00000000848	GNL3	86	36.822	Meleagris_gallopavo
ENSDARG00000006219	gnl3	100	43.972	ENSMAUG00000020178	Gnl3	100	43.316	Mesocricetus_auratus
ENSDARG00000006219	gnl3	100	40.070	ENSMICG00000016373	GNL3	100	40.418	Microcebus_murinus
ENSDARG00000006219	gnl3	100	43.304	ENSMOCG00000018437	Gnl3	100	42.580	Microtus_ochrogaster
ENSDARG00000006219	gnl3	99	52.491	ENSMMOG00000002815	gnl3	92	57.928	Mola_mola
ENSDARG00000006219	gnl3	86	49.174	ENSMODG00000011257	GNL3	100	45.280	Monodelphis_domestica
ENSDARG00000006219	gnl3	96	51.583	ENSMALG00000021043	gnl3	96	58.159	Monopterus_albus
ENSDARG00000006219	gnl3	100	42.959	MGP_CAROLIEiJ_G0019063	Gnl3	100	42.781	Mus_caroli
ENSDARG00000006219	gnl3	100	42.781	ENSMUSG00000042354	Gnl3	100	54.000	Mus_musculus
ENSDARG00000006219	gnl3	100	43.850	MGP_PahariEiJ_G0030080	Gnl3	100	43.850	Mus_pahari
ENSDARG00000006219	gnl3	100	42.959	MGP_SPRETEiJ_G0019948	Gnl3	100	42.781	Mus_spretus
ENSDARG00000006219	gnl3	100	42.907	ENSMPUG00000016777	GNL3	100	42.756	Mustela_putorius_furo
ENSDARG00000006219	gnl3	100	42.857	ENSMLUG00000000728	GNL3	100	42.683	Myotis_lucifugus
ENSDARG00000006219	gnl3	100	43.034	ENSNGAG00000017202	Gnl3	100	42.376	Nannospalax_galili
ENSDARG00000006219	gnl3	84	58.316	ENSNBRG00000013161	gnl3	99	57.551	Neolamprologus_brichardi
ENSDARG00000006219	gnl3	100	43.872	ENSNLEG00000007173	GNL3	100	43.672	Nomascus_leucogenys
ENSDARG00000006219	gnl3	66	41.935	ENSMEUG00000011502	-	87	39.202	Notamacropus_eugenii
ENSDARG00000006219	gnl3	78	39.318	ENSOPRG00000009356	GNL3	96	39.817	Ochotona_princeps
ENSDARG00000006219	gnl3	100	45.724	ENSODEG00000009492	GNL3	100	45.280	Octodon_degus
ENSDARG00000006219	gnl3	99	57.194	ENSONIG00000019335	gnl3	99	58.111	Oreochromis_niloticus
ENSDARG00000006219	gnl3	100	45.439	ENSOANG00000013437	GNL3	100	44.464	Ornithorhynchus_anatinus
ENSDARG00000006219	gnl3	100	43.186	ENSOCUG00000009841	GNL3	100	42.984	Oryctolagus_cuniculus
ENSDARG00000006219	gnl3	99	55.752	ENSORLG00000016030	gnl3	99	54.513	Oryzias_latipes
ENSDARG00000006219	gnl3	99	55.971	ENSORLG00020014358	gnl3	99	54.011	Oryzias_latipes_hni
ENSDARG00000006219	gnl3	99	55.793	ENSORLG00015009489	gnl3	99	54.545	Oryzias_latipes_hsok
ENSDARG00000006219	gnl3	99	53.982	ENSOMEG00000005462	gnl3	99	54.690	Oryzias_melastigma
ENSDARG00000006219	gnl3	100	42.414	ENSOGAG00000004101	GNL3	100	42.606	Otolemur_garnettii
ENSDARG00000006219	gnl3	100	44.092	ENSOARG00000002470	GNL3	100	44.858	Ovis_aries
ENSDARG00000006219	gnl3	100	43.585	ENSPPAG00000019253	GNL3	100	43.386	Pan_paniscus
ENSDARG00000006219	gnl3	100	43.210	ENSPPRG00000009550	GNL3	100	42.832	Panthera_pardus
ENSDARG00000006219	gnl3	100	43.034	ENSPTIG00000009356	GNL3	100	42.655	Panthera_tigris_altaica
ENSDARG00000006219	gnl3	100	43.585	ENSPTRG00000015009	GNL3	100	43.386	Pan_troglodytes
ENSDARG00000006219	gnl3	100	42.629	ENSPANG00000016579	GNL3	100	42.424	Papio_anubis
ENSDARG00000006219	gnl3	99	56.406	ENSPKIG00000024295	gnl3	99	56.007	Paramormyrops_kingsleyae
ENSDARG00000006219	gnl3	98	49.554	ENSPSIG00000011486	GNL3	100	48.837	Pelodiscus_sinensis
ENSDARG00000006219	gnl3	99	51.601	ENSPMGG00000008210	gnl3	99	51.865	Periophthalmus_magnuspinnatus
ENSDARG00000006219	gnl3	100	42.832	ENSPEMG00000017577	Gnl3	100	42.984	Peromyscus_maniculatus_bairdii
ENSDARG00000006219	gnl3	86	48.861	ENSPCIG00000018642	GNL3	98	43.717	Phascolarctos_cinereus
ENSDARG00000006219	gnl3	99	53.982	ENSPFOG00000017601	gnl3	99	53.982	Poecilia_formosa
ENSDARG00000006219	gnl3	99	56.128	ENSPLAG00000016968	gnl3	99	56.128	Poecilia_latipinna
ENSDARG00000006219	gnl3	99	54.317	ENSPMEG00000018775	gnl3	99	51.978	Poecilia_mexicana
ENSDARG00000006219	gnl3	99	53.058	ENSPREG00000002909	gnl3	99	50.540	Poecilia_reticulata
ENSDARG00000006219	gnl3	100	44.170	ENSPPYG00000013800	GNL3	100	43.794	Pongo_abelii
ENSDARG00000006219	gnl3	79	46.637	ENSPCAG00000002006	GNL3	80	46.396	Procavia_capensis
ENSDARG00000006219	gnl3	100	42.933	ENSPCOG00000026637	GNL3	100	43.234	Propithecus_coquereli
ENSDARG00000006219	gnl3	100	43.979	ENSPVAG00000012586	GNL3	100	43.531	Pteropus_vampyrus
ENSDARG00000006219	gnl3	90	53.488	ENSPNYG00000005130	gnl3	99	53.373	Pundamilia_nyererei
ENSDARG00000006219	gnl3	100	60.633	ENSPNAG00000013096	gnl3	100	60.281	Pygocentrus_nattereri
ENSDARG00000006219	gnl3	100	43.672	ENSRNOG00000028461	Gnl3	100	43.386	Rattus_norvegicus
ENSDARG00000006219	gnl3	86	47.619	ENSRBIG00000031778	GNL3	100	43.494	Rhinopithecus_bieti
ENSDARG00000006219	gnl3	86	47.619	ENSRROG00000030086	GNL3	100	43.494	Rhinopithecus_roxellana
ENSDARG00000006219	gnl3	100	44.308	ENSSBOG00000019990	GNL3	100	43.304	Saimiri_boliviensis_boliviensis
ENSDARG00000006219	gnl3	99	45.633	ENSSHAG00000006141	GNL3	99	45.276	Sarcophilus_harrisii
ENSDARG00000006219	gnl3	99	53.603	ENSSFOG00015021228	gnl3	99	52.724	Scleropages_formosus
ENSDARG00000006219	gnl3	99	57.576	ENSSMAG00000006662	gnl3	99	57.576	Scophthalmus_maximus
ENSDARG00000006219	gnl3	99	56.684	ENSSDUG00000000972	gnl3	99	56.684	Seriola_dumerili
ENSDARG00000006219	gnl3	99	56.684	ENSSLDG00000008692	gnl3	92	56.684	Seriola_lalandi_dorsalis
ENSDARG00000006219	gnl3	87	43.373	ENSSARG00000002226	GNL3	96	41.556	Sorex_araneus
ENSDARG00000006219	gnl3	100	47.561	ENSSPUG00000003582	GNL3	100	48.252	Sphenodon_punctatus
ENSDARG00000006219	gnl3	99	57.041	ENSSPAG00000020180	gnl3	99	57.041	Stegastes_partitus
ENSDARG00000006219	gnl3	100	43.540	ENSSSCG00000011449	GNL3	99	44.248	Sus_scrofa
ENSDARG00000006219	gnl3	99	44.504	ENSTGUG00000005774	GNL3	100	44.107	Taeniopygia_guttata
ENSDARG00000006219	gnl3	99	52.135	ENSTRUG00000005552	gnl3	99	52.313	Takifugu_rubripes
ENSDARG00000006219	gnl3	99	51.515	ENSTNIG00000007263	gnl3	99	52.585	Tetraodon_nigroviridis
ENSDARG00000006219	gnl3	97	41.636	ENSTBEG00000017518	GNL3	100	41.636	Tupaia_belangeri
ENSDARG00000006219	gnl3	100	42.882	ENSUAMG00000012347	GNL3	100	42.857	Ursus_americanus
ENSDARG00000006219	gnl3	100	43.058	ENSUMAG00000021001	GNL3	100	43.034	Ursus_maritimus
ENSDARG00000006219	gnl3	99	42.781	ENSVVUG00000024536	-	99	42.755	Vulpes_vulpes
ENSDARG00000006219	gnl3	85	52.842	ENSXCOG00000018425	gnl3	98	55.531	Xiphophorus_couchianus
ENSDARG00000006219	gnl3	99	54.189	ENSXMAG00000022565	gnl3	99	54.352	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	24211311.	IMP	Process
GO:0003407	neural retina development	21565180.	IMP	Process
GO:0005525	GTP binding	-	IEA	Function
GO:0005525	GTP binding	-	ISS	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISS	Component
GO:0007096	regulation of exit from mitosis	21565180.	IMP	Process
GO:0042127	regulation of cell proliferation	-	ISS	Process
GO:0045664	regulation of neuron differentiation	21565180.	IMP	Process