EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000006288 (Gene tree)
Gene ID
432371
Gene Symbol
prdm5
Alias
un-named hi61|unm hi61
Full Name
PR domain containing 5
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
111098 bases
Position
chr23:1926562-2037659
Accession
ZDB-GENE-040708-1
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000153711zf-C2H2PF00096.263.3e-64111
ENSDARP00000153711zf-C2H2PF00096.263.3e-64211
ENSDARP00000153711zf-C2H2PF00096.263.3e-64311
ENSDARP00000153711zf-C2H2PF00096.263.3e-64411
ENSDARP00000153711zf-C2H2PF00096.263.3e-64511
ENSDARP00000153711zf-C2H2PF00096.263.3e-64611
ENSDARP00000153711zf-C2H2PF00096.263.3e-64711
ENSDARP00000153711zf-C2H2PF00096.263.3e-64811
ENSDARP00000153711zf-C2H2PF00096.263.3e-64911
ENSDARP00000153711zf-C2H2PF00096.263.3e-641011
ENSDARP00000153711zf-C2H2PF00096.263.3e-641111
ENSDARP00000106969zf-C2H2PF00096.263.5e-64111
ENSDARP00000106969zf-C2H2PF00096.263.5e-64211
ENSDARP00000106969zf-C2H2PF00096.263.5e-64311
ENSDARP00000106969zf-C2H2PF00096.263.5e-64411
ENSDARP00000106969zf-C2H2PF00096.263.5e-64511
ENSDARP00000106969zf-C2H2PF00096.263.5e-64611
ENSDARP00000106969zf-C2H2PF00096.263.5e-64711
ENSDARP00000106969zf-C2H2PF00096.263.5e-64811
ENSDARP00000106969zf-C2H2PF00096.263.5e-64911
ENSDARP00000106969zf-C2H2PF00096.263.5e-641011
ENSDARP00000106969zf-C2H2PF00096.263.5e-641111
ENSDARP00000153711zf-metPF12874.71.4e-2612
ENSDARP00000153711zf-metPF12874.71.4e-2622
ENSDARP00000106969zf-metPF12874.71.5e-2612
ENSDARP00000106969zf-metPF12874.71.5e-2622
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000127443-3185-ENSDARP00000106969634 (aa)-F1Q8J8
ENSDART00000191312-2302-ENSDARP00000153711632 (aa)-Q6DRP9
Gene Model
Click here to download ENSDARG00000006288's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000006288's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000006288prdm57836.810ENSDARG00000101562znf10149336.686
ENSDARG00000006288prdm57933.792ENSDARG00000102959zgc:1712208935.520
ENSDARG00000006288prdm59033.062ENSDARG00000096575si:dkey-182i3.99633.062
ENSDARG00000006288prdm58431.601ENSDARG00000012642si:ch211-266d19.49431.601
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000006288prdm59978.344ENSG00000138738PRDM59978.344Homo_sapiens
ENSDARG00000006288prdm510084.494ENSAPOG00000023220prdm510084.177Acanthochromis_polyacanthus
ENSDARG00000006288prdm59171.453ENSAMEG00000003050PRDM510072.145Ailuropoda_melanoleuca
ENSDARG00000006288prdm510083.386ENSACIG00000000406prdm510082.911Amphilophus_citrinellus
ENSDARG00000006288prdm510085.285ENSAOCG00000014806prdm510084.810Amphiprion_ocellaris
ENSDARG00000006288prdm510075.957ENSAPEG00000016846prdm510076.723Amphiprion_percula
ENSDARG00000006288prdm510088.924ENSATEG00000013829prdm510088.644Anabas_testudineus
ENSDARG00000006288prdm59582.645ENSAPLG00000013828PRDM510082.645Anas_platyrhynchos
ENSDARG00000006288prdm510076.899ENSACAG00000012999PRDM510076.899Anolis_carolinensis
ENSDARG00000006288prdm59988.782ENSANAG00000027411PRDM59891.096Aotus_nancymaae
ENSDARG00000006288prdm510085.601ENSACLG00000017996prdm510085.127Astatotilapia_calliptera
ENSDARG00000006288prdm58589.758ENSAMXG00000041864prdm59989.758Astyanax_mexicanus
ENSDARG00000006288prdm510077.215ENSBTAG00000012111PRDM510077.215Bos_taurus
ENSDARG00000006288prdm59988.141ENSCJAG00000003133PRDM59891.034Callithrix_jacchus
ENSDARG00000006288prdm59269.588ENSCAFG00000004179PRDM510069.588Canis_familiaris
ENSDARG00000006288prdm510077.215ENSCAFG00020017685PRDM510077.215Canis_lupus_dingo
ENSDARG00000006288prdm510077.057ENSCHIG00000018772PRDM510077.057Capra_hircus
ENSDARG00000006288prdm59577.331ENSTSYG00000009630PRDM59577.331Carlito_syrichta
ENSDARG00000006288prdm58590.411ENSCAPG00000015217PRDM59890.411Cavia_aperea
ENSDARG00000006288prdm59587.821ENSCPOG00000012883PRDM59890.411Cavia_porcellus
ENSDARG00000006288prdm59988.462ENSCCAG00000023157PRDM59891.096Cebus_capucinus
ENSDARG00000006288prdm59988.462ENSCATG00000042510PRDM59891.096Cercocebus_atys
ENSDARG00000006288prdm59587.500ENSCLAG00000005392PRDM59890.411Chinchilla_lanigera
ENSDARG00000006288prdm59975.796ENSCSAG00000003729PRDM59975.637Chlorocebus_sabaeus
ENSDARG00000006288prdm59977.895ENSCHOG00000007801PRDM58977.895Choloepus_hoffmanni
ENSDARG00000006288prdm510081.123ENSCPBG00000024735PRDM510081.747Chrysemys_picta_bellii
ENSDARG00000006288prdm59988.462ENSCANG00000036807PRDM59891.096Colobus_angolensis_palliatus
ENSDARG00000006288prdm59987.821ENSCGRG00001010581Prdm59891.096Cricetulus_griseus_chok1gshd
ENSDARG00000006288prdm59568.896ENSCGRG00000010996-9868.729Cricetulus_griseus_crigri
ENSDARG00000006288prdm510083.544ENSCSEG00000019979prdm510083.386Cynoglossus_semilaevis
ENSDARG00000006288prdm510084.335ENSCVAG00000013692prdm510084.019Cyprinodon_variegatus
ENSDARG00000006288prdm59176.083ENSDNOG00000002009PRDM510076.083Dasypus_novemcinctus
ENSDARG00000006288prdm59987.179ENSDORG00000007739Prdm59987.179Dipodomys_ordii
ENSDARG00000006288prdm59081.553ENSETEG00000020268PRDM58583.505Echinops_telfairi
ENSDARG00000006288prdm59969.231ENSEBUG00000004301prdm510069.414Eptatretus_burgeri
ENSDARG00000006288prdm510087.658ENSEASG00005018365PRDM59989.933Equus_asinus_asinus
ENSDARG00000006288prdm510064.506ENSECAG00000024747-10075.389Equus_caballus
ENSDARG00000006288prdm59975.458ENSECAG00000011516PRDM59075.458Equus_caballus
ENSDARG00000006288prdm59972.318ENSEEUG00000010306PRDM510072.318Erinaceus_europaeus
ENSDARG00000006288prdm59985.635ENSELUG00000005894prdm59385.635Esox_lucius
ENSDARG00000006288prdm510077.057ENSFCAG00000025656PRDM510077.057Felis_catus
ENSDARG00000006288prdm59572.136ENSFALG00000008381PRDM510072.136Ficedula_albicollis
ENSDARG00000006288prdm59987.821ENSFDAG00000021361PRDM59890.411Fukomys_damarensis
ENSDARG00000006288prdm510085.285ENSFHEG00000013040prdm510084.968Fundulus_heteroclitus
ENSDARG00000006288prdm59576.316ENSGMOG00000012038prdm510076.316Gadus_morhua
ENSDARG00000006288prdm510083.333ENSGALG00000011963PRDM510083.333Gallus_gallus
ENSDARG00000006288prdm59988.214ENSGAFG00000019233prdm59588.029Gambusia_affinis
ENSDARG00000006288prdm59978.626ENSGAGG00000020362PRDM59979.008Gopherus_agassizii
ENSDARG00000006288prdm59988.462ENSGGOG00000013562PRDM59891.096Gorilla_gorilla
ENSDARG00000006288prdm510083.861ENSHBUG00000023375prdm510084.652Haplochromis_burtoni
ENSDARG00000006288prdm59977.311ENSHGLG00000003010PRDM59979.487Heterocephalus_glaber_female
ENSDARG00000006288prdm59988.141ENSHGLG00100003696PRDM59890.411Heterocephalus_glaber_male
ENSDARG00000006288prdm510087.658ENSHCOG00000012131prdm510087.362Hippocampus_comes
ENSDARG00000006288prdm510089.557ENSIPUG00000001248prdm510089.748Ictalurus_punctatus
ENSDARG00000006288prdm59585.897ENSSTOG00000004741PRDM59889.041Ictidomys_tridecemlineatus
ENSDARG00000006288prdm59587.821ENSJJAG00000011464Prdm59890.411Jaculus_jaculus
ENSDARG00000006288prdm510084.652ENSKMAG00000013663prdm510084.177Kryptolebias_marmoratus
ENSDARG00000006288prdm510088.608ENSLBEG00000022736prdm510088.449Labrus_bergylta
ENSDARG00000006288prdm59183.536ENSLACG00000009187PRDM59983.536Latimeria_chalumnae
ENSDARG00000006288prdm510087.975ENSLOCG00000009778prdm510087.697Lepisosteus_oculatus
ENSDARG00000006288prdm510075.158ENSLAFG00000006532PRDM59981.962Loxodonta_africana
ENSDARG00000006288prdm59988.462ENSMFAG00000045845PRDM59891.096Macaca_fascicularis
ENSDARG00000006288prdm59988.462ENSMMUG00000003249PRDM59891.096Macaca_mulatta
ENSDARG00000006288prdm59988.462ENSMNEG00000019018PRDM59891.096Macaca_nemestrina
ENSDARG00000006288prdm59976.236ENSMLEG00000023145PRDM59978.798Mandrillus_leucophaeus
ENSDARG00000006288prdm510086.867ENSMAMG00000013419prdm510086.709Mastacembelus_armatus
ENSDARG00000006288prdm510083.861ENSMZEG00005020645prdm510084.652Maylandia_zebra
ENSDARG00000006288prdm59583.306ENSMGAG00000010710PRDM510083.306Meleagris_gallopavo
ENSDARG00000006288prdm59987.821ENSMAUG00000006768Prdm59891.096Mesocricetus_auratus
ENSDARG00000006288prdm59987.821ENSMICG00000001459PRDM59890.411Microcebus_murinus
ENSDARG00000006288prdm59987.821ENSMOCG00000016267Prdm59891.096Microtus_ochrogaster
ENSDARG00000006288prdm510084.968ENSMMOG00000006035prdm510084.810Mola_mola
ENSDARG00000006288prdm510079.022ENSMODG00000018942PRDM510078.336Monodelphis_domestica
ENSDARG00000006288prdm510080.854ENSMALG00000013934prdm510080.538Monopterus_albus
ENSDARG00000006288prdm59987.500MGP_CAROLIEiJ_G0028463Prdm59890.411Mus_caroli
ENSDARG00000006288prdm59987.179ENSMUSG00000029913Prdm59890.411Mus_musculus
ENSDARG00000006288prdm59987.500MGP_PahariEiJ_G0022203Prdm59890.411Mus_pahari
ENSDARG00000006288prdm59987.179MGP_SPRETEiJ_G0029467Prdm59890.411Mus_spretus
ENSDARG00000006288prdm510077.215ENSMPUG00000017415PRDM510077.215Mustela_putorius_furo
ENSDARG00000006288prdm59170.294ENSMLUG00000006097PRDM59970.294Myotis_lucifugus
ENSDARG00000006288prdm59987.821ENSNGAG00000018317Prdm59890.411Nannospalax_galili
ENSDARG00000006288prdm510075.975ENSNBRG00000004976prdm510081.073Neolamprologus_brichardi
ENSDARG00000006288prdm59988.462ENSNLEG00000009107PRDM59891.096Nomascus_leucogenys
ENSDARG00000006288prdm58488.136ENSMEUG00000006576-7188.136Notamacropus_eugenii
ENSDARG00000006288prdm59560.248ENSOPRG00000011066-8160.248Ochotona_princeps
ENSDARG00000006288prdm59987.821ENSODEG00000009133PRDM59890.411Octodon_degus
ENSDARG00000006288prdm510089.241ENSONIG00000003111prdm510088.801Oreochromis_niloticus
ENSDARG00000006288prdm55394.444ENSOANG00000006197-10094.444Ornithorhynchus_anatinus
ENSDARG00000006288prdm59973.704ENSOANG00000015109PRDM59772.316Ornithorhynchus_anatinus
ENSDARG00000006288prdm59371.331ENSOCUG00000013454PRDM59972.526Oryctolagus_cuniculus
ENSDARG00000006288prdm510085.127ENSORLG00000016247prdm510084.652Oryzias_latipes
ENSDARG00000006288prdm510083.703ENSORLG00020018051prdm510084.810Oryzias_latipes_hni
ENSDARG00000006288prdm510085.127ENSORLG00015013760prdm510084.652Oryzias_latipes_hsok
ENSDARG00000006288prdm510084.834ENSOMEG00000005143prdm510084.360Oryzias_melastigma
ENSDARG00000006288prdm58468.053ENSOGAG00000009996PRDM59869.981Otolemur_garnettii
ENSDARG00000006288prdm59576.407ENSOARG00000015473PRDM510073.856Ovis_aries
ENSDARG00000006288prdm59975.520ENSPPAG00000043045PRDM59977.607Pan_paniscus
ENSDARG00000006288prdm510077.057ENSPPRG00000001020PRDM510077.057Panthera_pardus
ENSDARG00000006288prdm59576.872ENSPTIG00000010807PRDM59576.872Panthera_tigris_altaica
ENSDARG00000006288prdm59988.462ENSPTRG00000016403PRDM59891.096Pan_troglodytes
ENSDARG00000006288prdm59988.462ENSPANG00000023612PRDM59891.096Papio_anubis
ENSDARG00000006288prdm510050.000ENSPKIG00000015492prdm510063.924Paramormyrops_kingsleyae
ENSDARG00000006288prdm510081.732ENSPSIG00000013505PRDM510082.047Pelodiscus_sinensis
ENSDARG00000006288prdm510081.804ENSPMGG00000012622prdm510081.646Periophthalmus_magnuspinnatus
ENSDARG00000006288prdm58070.944ENSPMAG00000005248prdm510071.913Petromyzon_marinus
ENSDARG00000006288prdm59982.471ENSPFOG00000018630prdm510078.922Poecilia_formosa
ENSDARG00000006288prdm510088.133ENSPLAG00000014148prdm510087.816Poecilia_latipinna
ENSDARG00000006288prdm510085.601ENSPMEG00000018002prdm510085.127Poecilia_mexicana
ENSDARG00000006288prdm510085.601ENSPREG00000018366prdm510085.127Poecilia_reticulata
ENSDARG00000006288prdm59979.014ENSPPYG00000015031PRDM59979.014Pongo_abelii
ENSDARG00000006288prdm59572.546ENSPCAG00000011671PRDM510072.546Procavia_capensis
ENSDARG00000006288prdm59987.821ENSPCOG00000022828PRDM59890.411Propithecus_coquereli
ENSDARG00000006288prdm59573.456ENSPVAG00000012309PRDM59973.456Pteropus_vampyrus
ENSDARG00000006288prdm510085.443ENSPNYG00000012194prdm510084.968Pundamilia_nyererei
ENSDARG00000006288prdm59386.587ENSPNAG00000023191-10086.587Pygocentrus_nattereri
ENSDARG00000006288prdm510088.133ENSPNAG00000026181prdm510087.975Pygocentrus_nattereri
ENSDARG00000006288prdm59972.927ENSRNOG00000023679Prdm59972.758Rattus_norvegicus
ENSDARG00000006288prdm59988.462ENSRBIG00000041307PRDM59891.096Rhinopithecus_bieti
ENSDARG00000006288prdm59563.451ENSRROG00000035343PRDM59970.017Rhinopithecus_roxellana
ENSDARG00000006288prdm59988.462ENSSBOG00000022100PRDM59891.096Saimiri_boliviensis_boliviensis
ENSDARG00000006288prdm59176.327ENSSHAG00000003250PRDM510076.327Sarcophilus_harrisii
ENSDARG00000006288prdm59982.567ENSSFOG00015020478prdm59982.567Scleropages_formosus
ENSDARG00000006288prdm510089.399ENSSMAG00000018844prdm510089.117Scophthalmus_maximus
ENSDARG00000006288prdm59987.661ENSSDUG00000020397prdm510085.127Seriola_dumerili
ENSDARG00000006288prdm59988.601ENSSLDG00000013353prdm510085.127Seriola_lalandi_dorsalis
ENSDARG00000006288prdm59589.655ENSSARG00000014129-8088.889Sorex_araneus
ENSDARG00000006288prdm510093.354ENSSPUG00000009941PRDM59995.973Sphenodon_punctatus
ENSDARG00000006288prdm510089.082ENSSPAG00000013866prdm510088.766Stegastes_partitus
ENSDARG00000006288prdm59977.971ENSSSCG00000009101PRDM510077.848Sus_scrofa
ENSDARG00000006288prdm59583.389ENSTGUG00000001920PRDM510083.389Taeniopygia_guttata
ENSDARG00000006288prdm510083.703ENSTRUG00000013850prdm510084.494Takifugu_rubripes
ENSDARG00000006288prdm510071.273ENSTNIG00000005901prdm510071.273Tetraodon_nigroviridis
ENSDARG00000006288prdm59470.924ENSTBEG00000015386PRDM58570.924Tupaia_belangeri
ENSDARG00000006288prdm510077.373ENSTTRG00000010996PRDM510077.373Tursiops_truncatus
ENSDARG00000006288prdm59586.325ENSUAMG00000009994PRDM57786.325Ursus_americanus
ENSDARG00000006288prdm59587.658ENSUMAG00000003733PRDM59987.658Ursus_maritimus
ENSDARG00000006288prdm59767.863ENSVPAG00000007435PRDM510067.752Vicugna_pacos
ENSDARG00000006288prdm59376.570ENSVVUG00000013192PRDM510076.570Vulpes_vulpes
ENSDARG00000006288prdm510079.180ENSXETG00000002101prdm510079.180Xenopus_tropicalis
ENSDARG00000006288prdm510085.443ENSXCOG00000008567prdm510085.127Xiphophorus_couchianus
ENSDARG00000006288prdm59988.214ENSXMAG00000013825prdm510085.127Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000976transcription regulatory region sequence-specific DNA binding-IEAFunction
GO:0000977RNA polymerase II regulatory region sequence-specific DNA binding21873635.IBAFunction
GO:0003676nucleic acid binding-IEAFunction
GO:0003700DNA-binding transcription factor activity21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-IEAComponent
GO:0006355regulation of transcription, DNA-templated19169355.IMPProcess
GO:0016575histone deacetylation21873635.IBAProcess
GO:0031490chromatin DNA binding21873635.IBAFunction
GO:0043565sequence-specific DNA binding21873635.IBAFunction
GO:0046872metal ion binding-IEAFunction
GO:0048701embryonic cranial skeleton morphogenesis23109401.IMPProcess
GO:0048702embryonic neurocranium morphogenesis23109401.IGIProcess
GO:0048703embryonic viscerocranium morphogenesis23109401.IGIProcess
GO:0051567histone H3-K9 methylation21873635.IBAProcess
GO:0060828regulation of canonical Wnt signaling pathway19169355.IMPProcess
GO:0070491repressing transcription factor binding21873635.IBAFunction
GO:2000050regulation of non-canonical Wnt signaling pathway19169355.IMPProcess

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