EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000006395 (Gene tree)
Gene ID: 327336
Gene Symbol: rbm25b
Alias: fi03e10|rbm25|si:ch211-105d18.5|wu:fi03e10|zgc:56208
Full Name: RNA binding motif protein 25b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 54633 bases
Position: chr20:51131933-51186565
Accession: ZDB-GENE-030131-5547
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000102406	RRM_1	PF00076.22	8.5e-09	1	1
ENSDARP00000006694	RRM_1	PF00076.22	1e-08	1	1
ENSDARP00000006694	PWI	PF01480.17	1.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000114407	-	2376	-	ENSDARP00000102406	731 (aa)	-	F1QGH5
ENSDART00000027836	-	3094	XM_009295006	ENSDARP00000006694	830 (aa)	XP_009293281	A8DZA0
ENSDART00000147413	-	613	-	ENSDARP00000127323	62 (aa)	-	U3JAQ4

Gene Model

Click here to download ENSDARG00000006395's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000006395's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000006395	rbm25b	59	64.835	ENSDARG00000039266	rbm25a	99	92.405

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000006395	rbm25b	59	71.400	ENSAPOG00000017757	rbm25a	63	76.200	Acanthochromis_polyacanthus
ENSDARG00000006395	rbm25b	58	73.196	ENSACIG00000019482	rbm25a	63	74.053	Amphilophus_citrinellus
ENSDARG00000006395	rbm25b	58	71.399	ENSAOCG00000019308	rbm25b	64	76.099	Amphiprion_ocellaris
ENSDARG00000006395	rbm25b	55	73.650	ENSAOCG00000013695	rbm25a	64	77.543	Amphiprion_ocellaris
ENSDARG00000006395	rbm25b	59	72.525	ENSAPEG00000009666	rbm25b	65	76.673	Amphiprion_percula
ENSDARG00000006395	rbm25b	100	73.206	ENSAPEG00000007514	rbm25a	62	78.035	Amphiprion_percula
ENSDARG00000006395	rbm25b	57	75.104	ENSATEG00000020676	rbm25a	63	78.394	Anabas_testudineus
ENSDARG00000006395	rbm25b	58	72.107	ENSATEG00000017312	rbm25b	63	76.996	Anabas_testudineus
ENSDARG00000006395	rbm25b	100	60.596	ENSACLG00000027482	rbm25a	71	78.862	Astatotilapia_calliptera
ENSDARG00000006395	rbm25b	52	86.836	ENSAMXG00000024525	rbm25b	100	85.238	Astyanax_mexicanus
ENSDARG00000006395	rbm25b	50	78.453	ENSCAPG00000005239	RBM25	75	79.330	Cavia_aperea
ENSDARG00000006395	rbm25b	63	84.000	ENSCHOG00000008903	RBM25	65	84.000	Choloepus_hoffmanni
ENSDARG00000006395	rbm25b	56	90.580	ENSCGRG00001020817	Rbm25	53	91.538	Cricetulus_griseus_chok1gshd
ENSDARG00000006395	rbm25b	70	69.537	ENSCVAG00000005498	rbm25a	67	76.423	Cyprinodon_variegatus
ENSDARG00000006395	rbm25b	55	87.970	ENSEEUG00000007350	RBM25	83	72.235	Erinaceus_europaeus
ENSDARG00000006395	rbm25b	57	75.891	ENSFHEG00000003513	rbm25b	63	76.046	Fundulus_heteroclitus
ENSDARG00000006395	rbm25b	76	75.794	ENSGMOG00000014070	rbm25a	80	76.829	Gadus_morhua
ENSDARG00000006395	rbm25b	100	71.801	ENSGAFG00000018036	rbm25a	54	76.686	Gambusia_affinis
ENSDARG00000006395	rbm25b	57	71.630	ENSHBUG00000016908	rbm25a	63	79.383	Haplochromis_burtoni
ENSDARG00000006395	rbm25b	97	70.123	ENSHCOG00000000142	rbm25b	64	73.805	Hippocampus_comes
ENSDARG00000006395	rbm25b	60	67.054	ENSKMAG00000016242	rbm25a	87	75.954	Kryptolebias_marmoratus
ENSDARG00000006395	rbm25b	56	74.153	ENSKMAG00000018826	rbm25b	63	75.758	Kryptolebias_marmoratus
ENSDARG00000006395	rbm25b	58	72.107	ENSMAMG00000004524	rbm25b	63	77.567	Mastacembelus_armatus
ENSDARG00000006395	rbm25b	57	71.630	ENSMZEG00005011183	rbm25a	63	79.383	Maylandia_zebra
ENSDARG00000006395	rbm25b	51	74.419	ENSNBRG00000003761	rbm25a	63	79.383	Neolamprologus_brichardi
ENSDARG00000006395	rbm25b	57	75.311	ENSOMEG00000023172	rbm25b	64	74.144	Oryzias_melastigma
ENSDARG00000006395	rbm25b	52	73.614	ENSOMEG00000022138	rbm25a	67	74.138	Oryzias_melastigma
ENSDARG00000006395	rbm25b	58	75.770	ENSPKIG00000003203	rbm25b	75	79.008	Paramormyrops_kingsleyae
ENSDARG00000006395	rbm25b	74	76.384	ENSPFOG00000017931	rbm25a	59	77.457	Poecilia_formosa
ENSDARG00000006395	rbm25b	100	72.619	ENSPLAG00000018338	rbm25a	59	77.264	Poecilia_latipinna
ENSDARG00000006395	rbm25b	100	72.434	ENSPMEG00000024470	rbm25a	59	77.264	Poecilia_mexicana
ENSDARG00000006395	rbm25b	100	72.847	ENSPREG00000009228	rbm25a	59	77.649	Poecilia_reticulata
ENSDARG00000006395	rbm25b	100	87.170	ENSPNAG00000012024	rbm25b	63	89.210	Pygocentrus_nattereri
ENSDARG00000006395	rbm25b	53	76.233	ENSSFOG00015007093	rbm25	63	81.905	Scleropages_formosus
ENSDARG00000006395	rbm25b	57	75.051	ENSSMAG00000009745	rbm25a	62	73.245	Scophthalmus_maximus
ENSDARG00000006395	rbm25b	55	74.730	ENSSDUG00000017984	rbm25a	63	79.159	Seriola_dumerili
ENSDARG00000006395	rbm25b	56	72.068	ENSSLDG00000024573	rbm25b	62	73.208	Seriola_lalandi_dorsalis
ENSDARG00000006395	rbm25b	55	74.730	ENSSLDG00000010342	rbm25a	63	78.967	Seriola_lalandi_dorsalis
ENSDARG00000006395	rbm25b	62	80.567	ENSSPAG00000016168	rbm25b	62	77.947	Stegastes_partitus
ENSDARG00000006395	rbm25b	58	73.760	ENSTRUG00000017964	rbm25b	65	76.437	Takifugu_rubripes
ENSDARG00000006395	rbm25b	57	70.807	ENSTRUG00000003076	rbm25a	62	70.577	Takifugu_rubripes
ENSDARG00000006395	rbm25b	68	79.126	ENSTBEG00000010538	-	64	79.126	Tupaia_belangeri
ENSDARG00000006395	rbm25b	58	73.684	ENSVPAG00000009052	RBM25	55	80.579	Vicugna_pacos
ENSDARG00000006395	rbm25b	100	68.852	ENSXMAG00000009077	RBM25	60	76.493	Xiphophorus_maculatus
ENSDARG00000006395	rbm25b	100	73.609	ENSXMAG00000017290	rbm25b	62	75.706	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0006397	mRNA processing	-	IEA	Process