EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000006621 (Gene tree)
Gene ID: 692285
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 52233 bases
Position: chr1:27808916-27861148
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000093111	RRM_1	PF00076.22	2.1e-31	1	2
ENSDARP00000093111	RRM_1	PF00076.22	2.1e-31	2	2
ENSDARP00000141514	RRM_1	PF00076.22	2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000102335	-	2084	-	ENSDARP00000093111	512 (aa)	-	Q1JPY8
ENSDART00000160524	-	1619	-	ENSDARP00000141514	398 (aa)	-	A0A0R4IX95

Gene Model

Click here to download ENSDARG00000006621's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000006621's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000006621	pspc1	84	60.767	ENSDARG00000011564	sfpq	97	75.893
ENSDARG00000006621	pspc1	76	66.007	ENSDARG00000020482	nono	80	72.249

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000006621	pspc1	100	67.391	ENSG00000121390	PSPC1	98	71.948	Homo_sapiens
ENSDARG00000006621	pspc1	100	69.042	ENSAPOG00000015946	pspc1	100	64.259	Acanthochromis_polyacanthus
ENSDARG00000006621	pspc1	100	67.150	ENSAMEG00000017420	PSPC1	99	66.854	Ailuropoda_melanoleuca
ENSDARG00000006621	pspc1	100	62.624	ENSACIG00000018695	pspc1	100	58.427	Amphilophus_citrinellus
ENSDARG00000006621	pspc1	100	68.704	ENSAOCG00000005279	pspc1	100	63.586	Amphiprion_ocellaris
ENSDARG00000006621	pspc1	100	69.212	ENSAPEG00000015927	pspc1	100	63.941	Amphiprion_percula
ENSDARG00000006621	pspc1	100	56.373	ENSATEG00000004878	pspc1	100	55.263	Anabas_testudineus
ENSDARG00000006621	pspc1	72	67.808	ENSAPLG00000003643	SFPQ	82	58.043	Anas_platyrhynchos
ENSDARG00000006621	pspc1	100	69.157	ENSAPLG00000006246	PSPC1	100	70.361	Anas_platyrhynchos
ENSDARG00000006621	pspc1	72	59.532	ENSACAG00000013307	-	68	53.533	Anolis_carolinensis
ENSDARG00000006621	pspc1	100	66.746	ENSACAG00000002093	PSPC1	99	64.088	Anolis_carolinensis
ENSDARG00000006621	pspc1	100	67.391	ENSANAG00000000059	PSPC1	98	70.207	Aotus_nancymaae
ENSDARG00000006621	pspc1	100	60.891	ENSACLG00000027220	pspc1	100	57.411	Astatotilapia_calliptera
ENSDARG00000006621	pspc1	100	77.805	ENSAMXG00000036881	pspc1	100	77.024	Astyanax_mexicanus
ENSDARG00000006621	pspc1	100	67.391	ENSBTAG00000003934	PSPC1	99	66.229	Bos_taurus
ENSDARG00000006621	pspc1	100	67.391	ENSCJAG00000004554	PSPC1	99	66.479	Callithrix_jacchus
ENSDARG00000006621	pspc1	100	67.391	ENSCAFG00020002009	PSPC1	98	72.021	Canis_lupus_dingo
ENSDARG00000006621	pspc1	100	67.391	ENSCHIG00000016708	PSPC1	99	66.229	Capra_hircus
ENSDARG00000006621	pspc1	99	59.709	ENSTSYG00000032882	PSPC1	88	62.621	Carlito_syrichta
ENSDARG00000006621	pspc1	100	67.391	ENSCPOG00000000395	PSPC1	98	72.468	Cavia_porcellus
ENSDARG00000006621	pspc1	100	67.391	ENSCCAG00000033498	PSPC1	99	66.292	Cebus_capucinus
ENSDARG00000006621	pspc1	100	67.633	ENSCATG00000036434	PSPC1	95	77.259	Cercocebus_atys
ENSDARG00000006621	pspc1	99	68.613	ENSCLAG00000005241	PSPC1	89	70.976	Chinchilla_lanigera
ENSDARG00000006621	pspc1	100	64.078	ENSCHOG00000008913	PSPC1	99	63.296	Choloepus_hoffmanni
ENSDARG00000006621	pspc1	100	68.916	ENSCPBG00000020859	PSPC1	90	70.332	Chrysemys_picta_bellii
ENSDARG00000006621	pspc1	62	58.730	ENSCSAVG00000003533	-	60	55.692	Ciona_savignyi
ENSDARG00000006621	pspc1	66	82.061	ENSCANG00000018948	PSPC1	87	82.061	Colobus_angolensis_palliatus
ENSDARG00000006621	pspc1	100	67.633	ENSCGRG00001018368	Pspc1	99	67.103	Cricetulus_griseus_chok1gshd
ENSDARG00000006621	pspc1	100	67.633	ENSCGRG00000011724	Pspc1	99	67.103	Cricetulus_griseus_crigri
ENSDARG00000006621	pspc1	100	64.268	ENSCVAG00000007679	-	100	60.000	Cyprinodon_variegatus
ENSDARG00000006621	pspc1	100	67.633	ENSDNOG00000011078	PSPC1	99	66.171	Dasypus_novemcinctus
ENSDARG00000006621	pspc1	99	68.523	ENSDORG00000016050	Pspc1	99	63.433	Dipodomys_ordii
ENSDARG00000006621	pspc1	71	83.168	ENSETEG00000000502	-	72	83.168	Echinops_telfairi
ENSDARG00000006621	pspc1	61	43.452	ENSEBUG00000010133	pspc1	78	45.545	Eptatretus_burgeri
ENSDARG00000006621	pspc1	98	57.468	ENSEBUG00000003964	-	69	65.544	Eptatretus_burgeri
ENSDARG00000006621	pspc1	100	67.633	ENSEASG00005000119	PSPC1	98	72.468	Equus_asinus_asinus
ENSDARG00000006621	pspc1	100	67.633	ENSECAG00000017286	PSPC1	98	72.468	Equus_caballus
ENSDARG00000006621	pspc1	62	62.658	ENSEEUG00000011288	-	72	62.975	Erinaceus_europaeus
ENSDARG00000006621	pspc1	100	74.939	ENSELUG00000003746	pspc1	100	72.119	Esox_lucius
ENSDARG00000006621	pspc1	100	67.391	ENSFCAG00000027841	PSPC1	98	72.021	Felis_catus
ENSDARG00000006621	pspc1	100	69.398	ENSFALG00000008750	PSPC1	99	65.804	Ficedula_albicollis
ENSDARG00000006621	pspc1	100	67.150	ENSFDAG00000002617	PSPC1	99	66.667	Fukomys_damarensis
ENSDARG00000006621	pspc1	100	65.679	ENSGMOG00000015074	pspc1	100	61.567	Gadus_morhua
ENSDARG00000006621	pspc1	100	69.398	ENSGALG00000017142	PSPC1	99	65.977	Gallus_gallus
ENSDARG00000006621	pspc1	70	72.662	ENSGAFG00000006327	pspc1	83	64.938	Gambusia_affinis
ENSDARG00000006621	pspc1	100	64.516	ENSGACG00000014901	pspc1	92	73.860	Gasterosteus_aculeatus
ENSDARG00000006621	pspc1	100	68.916	ENSGAGG00000019164	PSPC1	90	70.332	Gopherus_agassizii
ENSDARG00000006621	pspc1	72	67.123	ENSGAGG00000017325	-	67	57.516	Gopherus_agassizii
ENSDARG00000006621	pspc1	100	67.391	ENSGGOG00000003414	PSPC1	98	71.948	Gorilla_gorilla
ENSDARG00000006621	pspc1	100	70.720	ENSHBUG00000001139	pspc1	100	65.974	Haplochromis_burtoni
ENSDARG00000006621	pspc1	100	67.150	ENSHGLG00000018811	PSPC1	99	66.417	Heterocephalus_glaber_female
ENSDARG00000006621	pspc1	58	83.478	ENSHGLG00100007962	PSPC1	99	72.046	Heterocephalus_glaber_male
ENSDARG00000006621	pspc1	81	70.154	ENSHCOG00000013251	pspc1	91	67.233	Hippocampus_comes
ENSDARG00000006621	pspc1	100	81.436	ENSIPUG00000013192	pspc1	100	77.863	Ictalurus_punctatus
ENSDARG00000006621	pspc1	100	67.633	ENSSTOG00000026833	PSPC1	98	71.355	Ictidomys_tridecemlineatus
ENSDARG00000006621	pspc1	100	67.150	ENSJJAG00000018334	Pspc1	99	65.985	Jaculus_jaculus
ENSDARG00000006621	pspc1	100	52.239	ENSKMAG00000013525	-	98	60.615	Kryptolebias_marmoratus
ENSDARG00000006621	pspc1	100	65.349	ENSLBEG00000004474	pspc1	95	64.038	Labrus_bergylta
ENSDARG00000006621	pspc1	100	66.988	ENSLACG00000010762	PSPC1	100	65.299	Latimeria_chalumnae
ENSDARG00000006621	pspc1	100	70.773	ENSLOCG00000010832	pspc1	99	70.833	Lepisosteus_oculatus
ENSDARG00000006621	pspc1	89	71.429	ENSLAFG00000010968	PSPC1	99	65.794	Loxodonta_africana
ENSDARG00000006621	pspc1	100	67.633	ENSMFAG00000032728	PSPC1	97	77.586	Macaca_fascicularis
ENSDARG00000006621	pspc1	100	67.633	ENSMMUG00000020262	PSPC1	94	77.522	Macaca_mulatta
ENSDARG00000006621	pspc1	100	67.633	ENSMNEG00000027401	PSPC1	98	68.547	Macaca_nemestrina
ENSDARG00000006621	pspc1	99	67.561	ENSMLEG00000039043	PSPC1	94	71.220	Mandrillus_leucophaeus
ENSDARG00000006621	pspc1	100	67.064	ENSMAMG00000004333	pspc1	97	63.308	Mastacembelus_armatus
ENSDARG00000006621	pspc1	100	60.891	ENSMZEG00005005726	pspc1	100	57.411	Maylandia_zebra
ENSDARG00000006621	pspc1	100	69.157	ENSMGAG00000015134	PSPC1	100	70.264	Meleagris_gallopavo
ENSDARG00000006621	pspc1	86	62.151	ENSMAUG00000021067	Pspc1	99	63.226	Mesocricetus_auratus
ENSDARG00000006621	pspc1	100	69.565	ENSMICG00000013970	PSPC1	98	72.324	Microcebus_murinus
ENSDARG00000006621	pspc1	100	67.391	ENSMOCG00000006060	Pspc1	99	65.985	Microtus_ochrogaster
ENSDARG00000006621	pspc1	75	86.364	ENSMMOG00000004352	pspc1	98	41.524	Mola_mola
ENSDARG00000006621	pspc1	88	70.924	ENSMODG00000008029	PSPC1	78	67.004	Monodelphis_domestica
ENSDARG00000006621	pspc1	100	68.734	ENSMALG00000008914	pspc1	100	63.327	Monopterus_albus
ENSDARG00000006621	pspc1	100	66.988	MGP_CAROLIEiJ_G0019341	Pspc1	99	68.230	Mus_caroli
ENSDARG00000006621	pspc1	100	67.229	ENSMUSG00000021938	Pspc1	99	68.230	Mus_musculus
ENSDARG00000006621	pspc1	100	67.470	MGP_PahariEiJ_G0030359	Pspc1	99	68.230	Mus_pahari
ENSDARG00000006621	pspc1	100	67.229	MGP_SPRETEiJ_G0020232	Pspc1	99	68.230	Mus_spretus
ENSDARG00000006621	pspc1	100	67.391	ENSMPUG00000013347	PSPC1	99	66.479	Mustela_putorius_furo
ENSDARG00000006621	pspc1	100	66.667	ENSMLUG00000017663	PSPC1	99	66.294	Myotis_lucifugus
ENSDARG00000006621	pspc1	100	68.599	ENSNGAG00000011271	Pspc1	99	65.981	Nannospalax_galili
ENSDARG00000006621	pspc1	74	64.541	ENSNBRG00000014059	pspc1	92	61.869	Neolamprologus_brichardi
ENSDARG00000006621	pspc1	100	67.633	ENSNLEG00000001294	PSPC1	99	66.417	Nomascus_leucogenys
ENSDARG00000006621	pspc1	79	80.882	ENSMEUG00000000476	PSPC1	84	66.284	Notamacropus_eugenii
ENSDARG00000006621	pspc1	100	56.522	ENSODEG00000007817	-	99	55.390	Octodon_degus
ENSDARG00000006621	pspc1	77	72.222	ENSODEG00000019012	-	99	60.600	Octodon_degus
ENSDARG00000006621	pspc1	100	71.078	ENSONIG00000012010	pspc1	99	66.292	Oreochromis_niloticus
ENSDARG00000006621	pspc1	89	56.098	ENSOANG00000011381	-	97	53.239	Ornithorhynchus_anatinus
ENSDARG00000006621	pspc1	99	69.268	ENSOANG00000009017	-	100	71.463	Ornithorhynchus_anatinus
ENSDARG00000006621	pspc1	100	67.150	ENSOCUG00000006153	PSPC1	99	66.048	Oryctolagus_cuniculus
ENSDARG00000006621	pspc1	100	66.998	ENSORLG00000004232	-	100	61.582	Oryzias_latipes
ENSDARG00000006621	pspc1	100	67.246	ENSORLG00020000578	PSPC1	93	64.909	Oryzias_latipes_hni
ENSDARG00000006621	pspc1	100	67.494	ENSORLG00015017480	pspc1	100	61.770	Oryzias_latipes_hsok
ENSDARG00000006621	pspc1	53	81.429	ENSOMEG00000003779	pspc1	96	81.340	Oryzias_melastigma
ENSDARG00000006621	pspc1	100	67.391	ENSOGAG00000012643	PSPC1	99	66.417	Otolemur_garnettii
ENSDARG00000006621	pspc1	100	67.067	ENSOARG00000014163	PSPC1	95	70.613	Ovis_aries
ENSDARG00000006621	pspc1	100	57.488	ENSPPAG00000009836	PSPC1	98	76.590	Pan_paniscus
ENSDARG00000006621	pspc1	100	67.391	ENSPPRG00000008833	PSPC1	99	66.479	Panthera_pardus
ENSDARG00000006621	pspc1	99	67.397	ENSPTIG00000016917	PSPC1	84	70.976	Panthera_tigris_altaica
ENSDARG00000006621	pspc1	88	71.858	ENSPTRG00000005677	PSPC1	98	71.948	Pan_troglodytes
ENSDARG00000006621	pspc1	100	67.633	ENSPANG00000001992	PSPC1	96	77.586	Papio_anubis
ENSDARG00000006621	pspc1	100	75.245	ENSPKIG00000003578	pspc1	100	71.048	Paramormyrops_kingsleyae
ENSDARG00000006621	pspc1	100	68.193	ENSPSIG00000005168	PSPC1	99	65.112	Pelodiscus_sinensis
ENSDARG00000006621	pspc1	57	77.533	ENSPMGG00000015135	pspc1	87	70.159	Periophthalmus_magnuspinnatus
ENSDARG00000006621	pspc1	100	67.391	ENSPEMG00000015214	Pspc1	99	66.916	Peromyscus_maniculatus_bairdii
ENSDARG00000006621	pspc1	56	41.967	ENSPMAG00000004618	pspc1	93	41.967	Petromyzon_marinus
ENSDARG00000006621	pspc1	100	67.150	ENSPCIG00000017680	PSPC1	100	66.296	Phascolarctos_cinereus
ENSDARG00000006621	pspc1	100	64.706	ENSPFOG00000003362	pspc1	97	62.427	Poecilia_formosa
ENSDARG00000006621	pspc1	100	64.706	ENSPLAG00000011540	pspc1	100	60.526	Poecilia_latipinna
ENSDARG00000006621	pspc1	77	56.782	ENSPLAG00000004407	-	63	51.844	Poecilia_latipinna
ENSDARG00000006621	pspc1	77	57.413	ENSPMEG00000001025	-	60	54.739	Poecilia_mexicana
ENSDARG00000006621	pspc1	100	64.951	ENSPMEG00000008322	pspc1	100	60.526	Poecilia_mexicana
ENSDARG00000006621	pspc1	100	64.216	ENSPREG00000007786	pspc1	100	59.774	Poecilia_reticulata
ENSDARG00000006621	pspc1	100	67.633	ENSPPYG00000005186	PSPC1	99	66.478	Pongo_abelii
ENSDARG00000006621	pspc1	68	81.595	ENSPCAG00000008314	-	66	81.595	Procavia_capensis
ENSDARG00000006621	pspc1	100	65.700	ENSPCOG00000014364	PSPC1	99	62.894	Propithecus_coquereli
ENSDARG00000006621	pspc1	100	67.703	ENSPVAG00000005036	PSPC1	99	66.165	Pteropus_vampyrus
ENSDARG00000006621	pspc1	100	60.891	ENSPNYG00000008893	pspc1	100	57.411	Pundamilia_nyererei
ENSDARG00000006621	pspc1	100	81.683	ENSPNAG00000016511	pspc1	100	78.286	Pygocentrus_nattereri
ENSDARG00000006621	pspc1	100	68.116	ENSRNOG00000020782	Pspc1	99	67.735	Rattus_norvegicus
ENSDARG00000006621	pspc1	100	67.391	ENSRBIG00000036057	PSPC1	97	77.810	Rhinopithecus_bieti
ENSDARG00000006621	pspc1	100	67.391	ENSRROG00000036334	PSPC1	98	72.468	Rhinopithecus_roxellana
ENSDARG00000006621	pspc1	99	59.854	ENSSBOG00000028172	PSPC1	90	78.261	Saimiri_boliviensis_boliviensis
ENSDARG00000006621	pspc1	100	61.058	ENSSHAG00000004696	PSPC1	99	61.624	Sarcophilus_harrisii
ENSDARG00000006621	pspc1	100	74.634	ENSSFOG00015001395	pspc1	99	75.906	Scleropages_formosus
ENSDARG00000006621	pspc1	100	66.506	ENSSMAG00000001761	pspc1	100	62.018	Scophthalmus_maximus
ENSDARG00000006621	pspc1	100	67.612	ENSSDUG00000010651	pspc1	100	62.950	Seriola_dumerili
ENSDARG00000006621	pspc1	100	60.199	ENSSLDG00000004284	pspc1	100	55.993	Seriola_lalandi_dorsalis
ENSDARG00000006621	pspc1	89	65.229	ENSSARG00000000888	PSPC1	99	60.714	Sorex_araneus
ENSDARG00000006621	pspc1	100	54.785	ENSSPUG00000008550	PSPC1	99	56.425	Sphenodon_punctatus
ENSDARG00000006621	pspc1	99	48.649	ENSSPUG00000001136	-	51	59.026	Sphenodon_punctatus
ENSDARG00000006621	pspc1	100	67.711	ENSSPAG00000001921	pspc1	100	62.316	Stegastes_partitus
ENSDARG00000006621	pspc1	100	67.874	ENSSSCG00000009569	PSPC1	99	72.021	Sus_scrofa
ENSDARG00000006621	pspc1	100	69.398	ENSTGUG00000011295	PSPC1	99	71.247	Taeniopygia_guttata
ENSDARG00000006621	pspc1	100	64.691	ENSTRUG00000011335	pspc1	96	63.960	Takifugu_rubripes
ENSDARG00000006621	pspc1	100	62.408	ENSTNIG00000010358	pspc1	100	59.434	Tetraodon_nigroviridis
ENSDARG00000006621	pspc1	99	63.480	ENSTBEG00000002361	PSPC1	99	56.309	Tupaia_belangeri
ENSDARG00000006621	pspc1	100	67.391	ENSTTRG00000003343	PSPC1	99	66.541	Tursiops_truncatus
ENSDARG00000006621	pspc1	58	83.550	ENSUAMG00000012309	PSPC1	99	73.143	Ursus_americanus
ENSDARG00000006621	pspc1	100	66.908	ENSUMAG00000013993	PSPC1	97	77.233	Ursus_maritimus
ENSDARG00000006621	pspc1	99	67.805	ENSVPAG00000010029	PSPC1	100	70.732	Vicugna_pacos
ENSDARG00000006621	pspc1	100	67.391	ENSVVUG00000006414	PSPC1	99	72.021	Vulpes_vulpes
ENSDARG00000006621	pspc1	70	72.302	ENSXCOG00000017438	pspc1	93	65.561	Xiphophorus_couchianus
ENSDARG00000006621	pspc1	70	73.022	ENSXMAG00000007929	pspc1	95	64.428	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000976	transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0016363	nuclear matrix	-	IEA	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0042752	regulation of circadian rhythm	-	ISS	Process
GO:0048511	rhythmic process	-	IEA	Process