EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000006766 (Gene tree)
Gene ID: 324404
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 297164 bases
Position: chr4:19396945-19694108
Accession: ZDB-GENE-030131-3124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000040404	TUDOR	PF00567.24	2.1e-27	1	1
ENSDARP00000040404	SNase	PF00565.17	6.6e-69	1	5
ENSDARP00000040404	SNase	PF00565.17	6.6e-69	2	5
ENSDARP00000040404	SNase	PF00565.17	6.6e-69	3	5
ENSDARP00000040404	SNase	PF00565.17	6.6e-69	4	5
ENSDARP00000040404	SNase	PF00565.17	6.6e-69	5	5
ENSDARP00000091746	SNase	PF00565.17	3.2e-44	1	3
ENSDARP00000091746	SNase	PF00565.17	3.2e-44	2	3
ENSDARP00000091746	SNase	PF00565.17	3.2e-44	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000100974	-	2171	-	ENSDARP00000091746	574 (aa)	-	Q7ZT42
ENSDART00000040405	-	3759	-	ENSDARP00000040404	913 (aa)	-	Q5RGK8

Gene Model

Click here to download ENSDARG00000006766's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000006766's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000006766	snd1	97	87.410	ENSG00000197157	SND1	100	84.337	Homo_sapiens
ENSDARG00000006766	snd1	99	91.579	ENSAPOG00000017599	snd1	100	90.252	Acanthochromis_polyacanthus
ENSDARG00000006766	snd1	98	87.120	ENSAMEG00000004664	SND1	94	84.481	Ailuropoda_melanoleuca
ENSDARG00000006766	snd1	98	87.486	ENSACIG00000003551	snd1	100	86.418	Amphilophus_citrinellus
ENSDARG00000006766	snd1	99	91.404	ENSAOCG00000014166	snd1	100	90.033	Amphiprion_ocellaris
ENSDARG00000006766	snd1	99	91.404	ENSAPEG00000007067	snd1	100	90.033	Amphiprion_percula
ENSDARG00000006766	snd1	99	91.228	ENSATEG00000018475	snd1	89	89.062	Anabas_testudineus
ENSDARG00000006766	snd1	97	87.410	ENSANAG00000034463	SND1	99	85.569	Aotus_nancymaae
ENSDARG00000006766	snd1	99	91.182	ENSACLG00000022897	snd1	100	89.595	Astatotilapia_calliptera
ENSDARG00000006766	snd1	98	93.761	ENSAMXG00000016318	snd1	100	91.138	Astyanax_mexicanus
ENSDARG00000006766	snd1	97	87.590	ENSBTAG00000010692	SND1	100	84.447	Bos_taurus
ENSDARG00000006766	snd1	99	48.780	WBGene00006626	tsn-1	99	46.121	Caenorhabditis_elegans
ENSDARG00000006766	snd1	97	87.590	ENSCJAG00000017668	SND1	99	85.569	Callithrix_jacchus
ENSDARG00000006766	snd1	99	85.965	ENSCAFG00000001700	SND1	100	84.447	Canis_familiaris
ENSDARG00000006766	snd1	99	85.965	ENSCAFG00020021639	SND1	100	84.447	Canis_lupus_dingo
ENSDARG00000006766	snd1	97	87.410	ENSCHIG00000023390	SND1	100	84.337	Capra_hircus
ENSDARG00000006766	snd1	95	87.868	ENSTSYG00000004979	SND1	97	87.868	Carlito_syrichta
ENSDARG00000006766	snd1	100	73.005	ENSCAPG00000010677	SND1	100	73.005	Cavia_aperea
ENSDARG00000006766	snd1	97	87.770	ENSCPOG00000006251	SND1	100	83.790	Cavia_porcellus
ENSDARG00000006766	snd1	97	87.410	ENSCCAG00000036847	SND1	100	84.447	Cebus_capucinus
ENSDARG00000006766	snd1	97	87.590	ENSCATG00000035214	SND1	99	85.908	Cercocebus_atys
ENSDARG00000006766	snd1	97	87.410	ENSCLAG00000011796	SND1	98	86.265	Chinchilla_lanigera
ENSDARG00000006766	snd1	97	87.590	ENSCSAG00000010182	SND1	100	84.775	Chlorocebus_sabaeus
ENSDARG00000006766	snd1	85	71.399	ENSCHOG00000002218	SND1	86	76.471	Choloepus_hoffmanni
ENSDARG00000006766	snd1	99	87.193	ENSCPBG00000018094	SND1	100	84.337	Chrysemys_picta_bellii
ENSDARG00000006766	snd1	95	61.400	ENSCING00000000524	-	99	56.911	Ciona_intestinalis
ENSDARG00000006766	snd1	97	61.728	ENSCSAVG00000008807	-	99	57.549	Ciona_savignyi
ENSDARG00000006766	snd1	97	87.590	ENSCANG00000035119	SND1	100	84.775	Colobus_angolensis_palliatus
ENSDARG00000006766	snd1	97	87.230	ENSCGRG00001022514	Snd1	98	86.097	Cricetulus_griseus_chok1gshd
ENSDARG00000006766	snd1	95	87.684	ENSCGRG00000012277	Snd1	99	85.006	Cricetulus_griseus_crigri
ENSDARG00000006766	snd1	99	90.526	ENSCSEG00000008661	snd1	100	88.719	Cynoglossus_semilaevis
ENSDARG00000006766	snd1	99	91.182	ENSCVAG00000010316	snd1	100	88.828	Cyprinodon_variegatus
ENSDARG00000006766	snd1	97	83.371	ENSDNOG00000006795	SND1	100	83.371	Dasypus_novemcinctus
ENSDARG00000006766	snd1	97	87.050	ENSDORG00000000336	Snd1	100	84.009	Dipodomys_ordii
ENSDARG00000006766	snd1	98	52.050	FBgn0035121	Tudor-SN	97	49.836	Drosophila_melanogaster
ENSDARG00000006766	snd1	90	88.889	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSDARG00000006766	snd1	85	67.353	ENSEBUG00000014201	-	84	77.717	Eptatretus_burgeri
ENSDARG00000006766	snd1	97	87.230	ENSEASG00005008513	SND1	100	83.190	Equus_asinus_asinus
ENSDARG00000006766	snd1	97	87.230	ENSECAG00000011451	SND1	100	84.337	Equus_caballus
ENSDARG00000006766	snd1	99	84.912	ENSEEUG00000014737	SND1	100	75.027	Erinaceus_europaeus
ENSDARG00000006766	snd1	98	90.553	ENSELUG00000001805	snd1	97	88.280	Esox_lucius
ENSDARG00000006766	snd1	99	86.140	ENSFCAG00000008289	SND1	100	84.556	Felis_catus
ENSDARG00000006766	snd1	97	87.545	ENSFDAG00000015881	SND1	100	83.790	Fukomys_damarensis
ENSDARG00000006766	snd1	99	90.653	ENSFHEG00000004093	snd1	99	88.309	Fundulus_heteroclitus
ENSDARG00000006766	snd1	69	83.871	ENSGMOG00000018932	snd1	60	83.871	Gadus_morhua
ENSDARG00000006766	snd1	50	90.345	ENSGALG00000052684	-	50	87.417	Gallus_gallus
ENSDARG00000006766	snd1	99	90.829	ENSGAFG00000008421	snd1	99	90.428	Gambusia_affinis
ENSDARG00000006766	snd1	100	57.096	ENSGACG00000019793	snd1	100	57.096	Gasterosteus_aculeatus
ENSDARG00000006766	snd1	97	87.590	ENSGGOG00000009614	SND1	99	85.682	Gorilla_gorilla
ENSDARG00000006766	snd1	99	91.197	ENSHBUG00000019135	snd1	100	89.716	Haplochromis_burtoni
ENSDARG00000006766	snd1	97	87.050	ENSHGLG00000003618	SND1	98	86.097	Heterocephalus_glaber_female
ENSDARG00000006766	snd1	97	87.050	ENSHGLG00100012449	SND1	99	84.650	Heterocephalus_glaber_male
ENSDARG00000006766	snd1	99	89.947	ENSHCOG00000005266	snd1	100	88.719	Hippocampus_comes
ENSDARG00000006766	snd1	98	92.870	ENSIPUG00000013279	snd1	100	89.387	Ictalurus_punctatus
ENSDARG00000006766	snd1	97	87.410	ENSSTOG00000002140	SND1	100	84.228	Ictidomys_tridecemlineatus
ENSDARG00000006766	snd1	97	87.230	ENSJJAG00000009561	Snd1	100	84.228	Jaculus_jaculus
ENSDARG00000006766	snd1	99	91.534	ENSKMAG00000016997	snd1	100	89.814	Kryptolebias_marmoratus
ENSDARG00000006766	snd1	99	90.300	ENSLBEG00000013563	snd1	100	88.938	Labrus_bergylta
ENSDARG00000006766	snd1	98	88.803	ENSLOCG00000015537	snd1	100	87.717	Lepisosteus_oculatus
ENSDARG00000006766	snd1	99	85.789	ENSLAFG00000009696	SND1	100	84.447	Loxodonta_africana
ENSDARG00000006766	snd1	97	87.590	ENSMFAG00000038114	SND1	99	85.908	Macaca_fascicularis
ENSDARG00000006766	snd1	97	87.590	ENSMMUG00000015432	SND1	100	84.775	Macaca_mulatta
ENSDARG00000006766	snd1	97	87.590	ENSMNEG00000039808	SND1	100	85.923	Macaca_nemestrina
ENSDARG00000006766	snd1	97	87.590	ENSMLEG00000029040	SND1	100	85.811	Mandrillus_leucophaeus
ENSDARG00000006766	snd1	99	91.358	ENSMAMG00000011739	snd1	100	89.485	Mastacembelus_armatus
ENSDARG00000006766	snd1	99	91.182	ENSMZEG00005005681	snd1	100	89.595	Maylandia_zebra
ENSDARG00000006766	snd1	97	87.410	ENSMICG00000000097	SND1	100	84.447	Microcebus_murinus
ENSDARG00000006766	snd1	97	87.410	ENSMOCG00000005040	Snd1	100	84.447	Microtus_ochrogaster
ENSDARG00000006766	snd1	100	89.376	ENSMMOG00000001795	snd1	100	89.376	Mola_mola
ENSDARG00000006766	snd1	97	87.004	ENSMODG00000015182	SND1	100	84.009	Monodelphis_domestica
ENSDARG00000006766	snd1	99	91.549	ENSMALG00000012071	snd1	100	89.278	Monopterus_albus
ENSDARG00000006766	snd1	97	87.184	MGP_CAROLIEiJ_G0028159	Snd1	99	85.906	Mus_caroli
ENSDARG00000006766	snd1	97	86.823	ENSMUSG00000001424	Snd1	100	83.790	Mus_musculus
ENSDARG00000006766	snd1	97	87.184	MGP_PahariEiJ_G0021917	Snd1	100	85.906	Mus_pahari
ENSDARG00000006766	snd1	97	87.184	MGP_SPRETEiJ_G0029159	Snd1	100	84.009	Mus_spretus
ENSDARG00000006766	snd1	99	85.965	ENSMPUG00000006545	SND1	100	84.337	Mustela_putorius_furo
ENSDARG00000006766	snd1	94	88.931	ENSMLUG00000017130	SND1	99	84.410	Myotis_lucifugus
ENSDARG00000006766	snd1	97	87.410	ENSNGAG00000011186	Snd1	100	84.228	Nannospalax_galili
ENSDARG00000006766	snd1	99	91.182	ENSNBRG00000006681	snd1	100	89.704	Neolamprologus_brichardi
ENSDARG00000006766	snd1	99	85.965	ENSNLEG00000012263	SND1	100	85.698	Nomascus_leucogenys
ENSDARG00000006766	snd1	95	85.743	ENSOPRG00000013405	SND1	92	88.889	Ochotona_princeps
ENSDARG00000006766	snd1	97	87.590	ENSODEG00000011502	SND1	99	84.607	Octodon_degus
ENSDARG00000006766	snd1	99	91.182	ENSONIG00000011481	snd1	97	89.814	Oreochromis_niloticus
ENSDARG00000006766	snd1	98	84.287	ENSOANG00000000817	SND1	98	84.287	Ornithorhynchus_anatinus
ENSDARG00000006766	snd1	99	85.088	ENSOCUG00000001620	SND1	100	83.352	Oryctolagus_cuniculus
ENSDARG00000006766	snd1	96	92.532	ENSORLG00000015201	snd1	100	88.390	Oryzias_latipes
ENSDARG00000006766	snd1	96	92.714	ENSORLG00020013991	snd1	100	88.609	Oryzias_latipes_hni
ENSDARG00000006766	snd1	96	92.714	ENSORLG00015012436	snd1	100	88.609	Oryzias_latipes_hsok
ENSDARG00000006766	snd1	99	91.182	ENSOMEG00000006406	snd1	100	88.609	Oryzias_melastigma
ENSDARG00000006766	snd1	95	88.257	ENSOGAG00000013356	SND1	94	84.372	Otolemur_garnettii
ENSDARG00000006766	snd1	95	87.890	ENSOARG00000002149	SND1	100	83.221	Ovis_aries
ENSDARG00000006766	snd1	97	87.590	ENSPPAG00000042947	SND1	100	84.447	Pan_paniscus
ENSDARG00000006766	snd1	99	86.140	ENSPPRG00000004494	SND1	100	84.556	Panthera_pardus
ENSDARG00000006766	snd1	99	86.140	ENSPTIG00000014214	SND1	100	84.447	Panthera_tigris_altaica
ENSDARG00000006766	snd1	97	87.590	ENSPTRG00000023911	SND1	99	85.569	Pan_troglodytes
ENSDARG00000006766	snd1	97	87.590	ENSPANG00000011997	SND1	99	85.908	Papio_anubis
ENSDARG00000006766	snd1	95	92.043	ENSPKIG00000023494	snd1	100	86.181	Paramormyrops_kingsleyae
ENSDARG00000006766	snd1	91	91.619	ENSPMGG00000003629	snd1	100	89.725	Periophthalmus_magnuspinnatus
ENSDARG00000006766	snd1	97	87.410	ENSPEMG00000010240	Snd1	100	84.228	Peromyscus_maniculatus_bairdii
ENSDARG00000006766	snd1	93	80.224	ENSPMAG00000007915	-	99	73.844	Petromyzon_marinus
ENSDARG00000006766	snd1	97	87.726	ENSPCIG00000011561	SND1	100	84.556	Phascolarctos_cinereus
ENSDARG00000006766	snd1	99	90.653	ENSPFOG00000001557	snd1	100	89.047	Poecilia_formosa
ENSDARG00000006766	snd1	100	89.157	ENSPLAG00000018459	snd1	97	89.157	Poecilia_latipinna
ENSDARG00000006766	snd1	99	90.829	ENSPMEG00000006803	snd1	100	89.157	Poecilia_mexicana
ENSDARG00000006766	snd1	99	90.829	ENSPREG00000002189	snd1	100	89.157	Poecilia_reticulata
ENSDARG00000006766	snd1	97	87.770	ENSPPYG00000017972	SND1	100	88.889	Pongo_abelii
ENSDARG00000006766	snd1	98	77.148	ENSPCAG00000011305	SND1	100	74.808	Procavia_capensis
ENSDARG00000006766	snd1	97	87.410	ENSPCOG00000026791	SND1	100	85.698	Propithecus_coquereli
ENSDARG00000006766	snd1	97	84.353	ENSPVAG00000013945	SND1	100	82.475	Pteropus_vampyrus
ENSDARG00000006766	snd1	99	91.182	ENSPNYG00000000932	snd1	100	89.485	Pundamilia_nyererei
ENSDARG00000006766	snd1	98	92.870	ENSPNAG00000001206	snd1	100	90.263	Pygocentrus_nattereri
ENSDARG00000006766	snd1	97	87.184	ENSRNOG00000031173	Snd1	100	84.009	Rattus_norvegicus
ENSDARG00000006766	snd1	93	88.806	ENSRBIG00000027782	-	93	88.868	Rhinopithecus_bieti
ENSDARG00000006766	snd1	97	87.590	ENSRROG00000033020	SND1	100	84.775	Rhinopithecus_roxellana
ENSDARG00000006766	snd1	97	87.590	ENSSBOG00000032461	SND1	99	85.569	Saimiri_boliviensis_boliviensis
ENSDARG00000006766	snd1	98	82.155	ENSSHAG00000015359	SND1	100	82.155	Sarcophilus_harrisii
ENSDARG00000006766	snd1	98	90.283	ENSSFOG00015001103	snd1	100	87.486	Scleropages_formosus
ENSDARG00000006766	snd1	98	90.615	ENSSMAG00000001932	snd1	95	89.595	Scophthalmus_maximus
ENSDARG00000006766	snd1	99	91.053	ENSSDUG00000002699	snd1	94	89.485	Seriola_dumerili
ENSDARG00000006766	snd1	100	82.366	ENSSLDG00000001950	snd1	100	82.366	Seriola_lalandi_dorsalis
ENSDARG00000006766	snd1	95	80.515	ENSSARG00000004877	SND1	92	80.441	Sorex_araneus
ENSDARG00000006766	snd1	93	83.365	ENSSPUG00000017586	SND1	96	81.488	Sphenodon_punctatus
ENSDARG00000006766	snd1	98	90.265	ENSSPAG00000021398	snd1	99	90.894	Stegastes_partitus
ENSDARG00000006766	snd1	97	87.050	ENSSSCG00000016590	SND1	100	84.337	Sus_scrofa
ENSDARG00000006766	snd1	99	93.227	ENSTRUG00000014067	snd1	100	88.499	Takifugu_rubripes
ENSDARG00000006766	snd1	98	90.442	ENSTNIG00000011019	snd1	98	90.772	Tetraodon_nigroviridis
ENSDARG00000006766	snd1	93	88.272	ENSTBEG00000003999	SND1	100	80.141	Tupaia_belangeri
ENSDARG00000006766	snd1	98	80.979	ENSTTRG00000006059	SND1	100	80.175	Tursiops_truncatus
ENSDARG00000006766	snd1	87	84.440	ENSUAMG00000005604	-	93	84.440	Ursus_americanus
ENSDARG00000006766	snd1	72	76.623	ENSUAMG00000002820	-	89	76.623	Ursus_americanus
ENSDARG00000006766	snd1	99	86.316	ENSUMAG00000005960	SND1	100	84.666	Ursus_maritimus
ENSDARG00000006766	snd1	95	77.574	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSDARG00000006766	snd1	99	85.965	ENSVVUG00000007226	SND1	100	84.447	Vulpes_vulpes
ENSDARG00000006766	snd1	93	87.079	ENSXETG00000023043	snd1	100	80.160	Xenopus_tropicalis
ENSDARG00000006766	snd1	91	92.557	ENSXCOG00000013629	snd1	99	86.951	Xiphophorus_couchianus
ENSDARG00000006766	snd1	99	91.005	ENSXMAG00000011469	snd1	100	89.485	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0004518	nuclease activity	21873635.	IBA	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	12753931.	IDA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0016442	RISC complex	-	IEA	Component
GO:0031047	gene silencing by RNA	-	IEA	Process