EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000007045 (Gene tree)
Gene ID: 569055
Gene Symbol: cnot4a
Alias: si:dkey-230e6.2
Full Name: CCR4-NOT transcription complex%2C subunit 4a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 20026 bases
Position: chr25:20004835-20024860
Accession: ZDB-GENE-090313-262
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000143940	RRM_1	PF00076.22	2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000140182	-	362	-	ENSDARP00000119356	31 (aa)	-	E9QF89
ENSDART00000174776	-	2619	XM_692417	ENSDARP00000143940	772 (aa)	XP_697509	A0A286YAE5

Gene Model

Click here to download ENSDARG00000007045's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000007045's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000007045	cnot4a	100	74.265	ENSDARG00000007639	cnot4b	100	73.710

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000007045	cnot4a	100	69.870	ENSG00000080802	CNOT4	97	75.658	Homo_sapiens
ENSDARG00000007045	cnot4a	94	78.393	ENSAPOG00000016272	cnot4a	93	87.748	Acanthochromis_polyacanthus
ENSDARG00000007045	cnot4a	94	69.330	ENSAMEG00000012081	CNOT4	100	66.979	Ailuropoda_melanoleuca
ENSDARG00000007045	cnot4a	100	77.351	ENSACIG00000003011	cnot4a	100	76.609	Amphilophus_citrinellus
ENSDARG00000007045	cnot4a	100	78.121	ENSAOCG00000010792	cnot4a	100	87.748	Amphiprion_ocellaris
ENSDARG00000007045	cnot4a	100	78.121	ENSAPEG00000004680	cnot4a	100	87.748	Amphiprion_percula
ENSDARG00000007045	cnot4a	100	78.137	ENSATEG00000017580	cnot4a	100	77.640	Anabas_testudineus
ENSDARG00000007045	cnot4a	100	70.787	ENSAPLG00000016441	CNOT4	100	70.412	Anas_platyrhynchos
ENSDARG00000007045	cnot4a	100	71.286	ENSACAG00000011154	CNOT4	100	71.036	Anolis_carolinensis
ENSDARG00000007045	cnot4a	100	69.870	ENSANAG00000032156	CNOT4	87	89.668	Aotus_nancymaae
ENSDARG00000007045	cnot4a	100	77.267	ENSACLG00000002514	cnot4a	100	76.894	Astatotilapia_calliptera
ENSDARG00000007045	cnot4a	100	72.993	ENSAMXG00000011473	cnot4b	100	72.616	Astyanax_mexicanus
ENSDARG00000007045	cnot4a	100	87.231	ENSAMXG00000001373	cnot4a	100	88.411	Astyanax_mexicanus
ENSDARG00000007045	cnot4a	100	69.330	ENSBTAG00000017919	CNOT4	100	69.816	Bos_taurus
ENSDARG00000007045	cnot4a	100	69.870	ENSCJAG00000012532	CNOT4	85	89.668	Callithrix_jacchus
ENSDARG00000007045	cnot4a	100	69.870	ENSCAFG00000003223	CNOT4	100	70.370	Canis_familiaris
ENSDARG00000007045	cnot4a	93	69.870	ENSCAFG00020000093	CNOT4	100	70.370	Canis_lupus_dingo
ENSDARG00000007045	cnot4a	100	69.330	ENSCHIG00000010955	CNOT4	100	70.370	Capra_hircus
ENSDARG00000007045	cnot4a	100	69.870	ENSTSYG00000000893	CNOT4	99	71.951	Carlito_syrichta
ENSDARG00000007045	cnot4a	91	88.971	ENSCAPG00000006213	CNOT4	100	88.971	Cavia_aperea
ENSDARG00000007045	cnot4a	100	70.130	ENSCPOG00000011526	CNOT4	100	70.635	Cavia_porcellus
ENSDARG00000007045	cnot4a	100	69.330	ENSCCAG00000024414	CNOT4	94	94.323	Cebus_capucinus
ENSDARG00000007045	cnot4a	100	69.330	ENSCATG00000022607	CNOT4	85	89.668	Cercocebus_atys
ENSDARG00000007045	cnot4a	100	70.130	ENSCLAG00000001857	CNOT4	100	70.635	Chinchilla_lanigera
ENSDARG00000007045	cnot4a	100	69.870	ENSCSAG00000009096	CNOT4	100	70.370	Chlorocebus_sabaeus
ENSDARG00000007045	cnot4a	61	93.583	ENSCHOG00000010412	CNOT4	66	93.583	Choloepus_hoffmanni
ENSDARG00000007045	cnot4a	100	71.020	ENSCPBG00000004959	CNOT4	100	70.647	Chrysemys_picta_bellii
ENSDARG00000007045	cnot4a	100	69.330	ENSCANG00000029319	CNOT4	85	89.668	Colobus_angolensis_palliatus
ENSDARG00000007045	cnot4a	100	70.284	ENSCGRG00001014651	Cnot4	100	70.789	Cricetulus_griseus_chok1gshd
ENSDARG00000007045	cnot4a	100	70.284	ENSCGRG00000005727	Cnot4	100	70.789	Cricetulus_griseus_crigri
ENSDARG00000007045	cnot4a	95	77.676	ENSCSEG00000015080	cnot4a	93	77.734	Cynoglossus_semilaevis
ENSDARG00000007045	cnot4a	100	75.990	ENSCVAG00000009399	cnot4a	100	76.303	Cyprinodon_variegatus
ENSDARG00000007045	cnot4a	100	69.330	ENSDNOG00000009409	CNOT4	100	69.816	Dasypus_novemcinctus
ENSDARG00000007045	cnot4a	100	70.130	ENSDORG00000012268	Cnot4	100	70.635	Dipodomys_ordii
ENSDARG00000007045	cnot4a	99	65.722	ENSETEG00000013407	CNOT4	94	66.142	Echinops_telfairi
ENSDARG00000007045	cnot4a	100	68.165	ENSEASG00005014430	CNOT4	100	69.816	Equus_asinus_asinus
ENSDARG00000007045	cnot4a	100	69.330	ENSECAG00000020262	CNOT4	100	69.816	Equus_caballus
ENSDARG00000007045	cnot4a	88	89.781	ENSELUG00000011540	cnot4b	96	89.781	Esox_lucius
ENSDARG00000007045	cnot4a	100	72.051	ENSELUG00000008742	cnot4a	100	72.585	Esox_lucius
ENSDARG00000007045	cnot4a	100	69.870	ENSFCAG00000011904	CNOT4	96	75.676	Felis_catus
ENSDARG00000007045	cnot4a	100	70.911	ENSFALG00000011194	CNOT4	100	70.537	Ficedula_albicollis
ENSDARG00000007045	cnot4a	100	69.870	ENSFDAG00000013525	CNOT4	100	70.370	Fukomys_damarensis
ENSDARG00000007045	cnot4a	100	75.769	ENSFHEG00000006608	cnot4a	100	88.294	Fundulus_heteroclitus
ENSDARG00000007045	cnot4a	96	70.277	ENSGMOG00000001329	cnot4a	98	71.026	Gadus_morhua
ENSDARG00000007045	cnot4a	100	70.911	ENSGALG00000011682	CNOT4	100	70.698	Gallus_gallus
ENSDARG00000007045	cnot4a	100	77.463	ENSGACG00000004276	cnot4a	100	88.514	Gasterosteus_aculeatus
ENSDARG00000007045	cnot4a	100	70.896	ENSGAGG00000017331	CNOT4	100	70.522	Gopherus_agassizii
ENSDARG00000007045	cnot4a	97	63.147	ENSGGOG00000000142	CNOT4	97	75.658	Gorilla_gorilla
ENSDARG00000007045	cnot4a	100	77.267	ENSHBUG00000000027	cnot4a	100	76.894	Haplochromis_burtoni
ENSDARG00000007045	cnot4a	100	69.870	ENSHGLG00000011533	CNOT4	100	70.370	Heterocephalus_glaber_female
ENSDARG00000007045	cnot4a	76	69.330	ENSHGLG00100013058	CNOT4	94	69.816	Heterocephalus_glaber_male
ENSDARG00000007045	cnot4a	100	76.391	ENSHCOG00000015815	cnot4a	100	75.773	Hippocampus_comes
ENSDARG00000007045	cnot4a	100	84.211	ENSIPUG00000006393	cnot4	100	84.211	Ictalurus_punctatus
ENSDARG00000007045	cnot4a	100	71.359	ENSIPUG00000016994	cnot4b	100	91.039	Ictalurus_punctatus
ENSDARG00000007045	cnot4a	100	69.870	ENSSTOG00000007717	CNOT4	100	70.370	Ictidomys_tridecemlineatus
ENSDARG00000007045	cnot4a	67	86.397	ENSJJAG00000019991	-	94	70.588	Jaculus_jaculus
ENSDARG00000007045	cnot4a	100	69.870	ENSJJAG00000016618	Cnot4	100	70.370	Jaculus_jaculus
ENSDARG00000007045	cnot4a	100	73.247	ENSKMAG00000004581	cnot4a	100	73.684	Kryptolebias_marmoratus
ENSDARG00000007045	cnot4a	100	78.580	ENSLBEG00000009999	cnot4a	100	77.833	Labrus_bergylta
ENSDARG00000007045	cnot4a	100	71.536	ENSLACG00000002647	CNOT4	99	71.473	Latimeria_chalumnae
ENSDARG00000007045	cnot4a	100	76.508	ENSLOCG00000016126	cnot4a	100	76.226	Lepisosteus_oculatus
ENSDARG00000007045	cnot4a	100	69.330	ENSLAFG00000000709	CNOT4	100	69.816	Loxodonta_africana
ENSDARG00000007045	cnot4a	100	69.870	ENSMFAG00000046349	CNOT4	85	89.668	Macaca_fascicularis
ENSDARG00000007045	cnot4a	100	69.330	ENSMMUG00000016181	CNOT4	85	89.668	Macaca_mulatta
ENSDARG00000007045	cnot4a	100	69.330	ENSMNEG00000042164	CNOT4	85	89.668	Macaca_nemestrina
ENSDARG00000007045	cnot4a	100	69.330	ENSMLEG00000032709	CNOT4	85	89.668	Mandrillus_leucophaeus
ENSDARG00000007045	cnot4a	100	78.829	ENSMAMG00000023194	cnot4a	100	78.358	Mastacembelus_armatus
ENSDARG00000007045	cnot4a	100	77.267	ENSMZEG00005007312	cnot4a	100	76.894	Maylandia_zebra
ENSDARG00000007045	cnot4a	100	70.537	ENSMGAG00000011788	CNOT4	100	70.162	Meleagris_gallopavo
ENSDARG00000007045	cnot4a	100	69.870	ENSMAUG00000020415	Cnot4	100	70.370	Mesocricetus_auratus
ENSDARG00000007045	cnot4a	100	69.330	ENSMICG00000001667	CNOT4	100	75.316	Microcebus_murinus
ENSDARG00000007045	cnot4a	100	70.284	ENSMOCG00000020955	Cnot4	100	70.789	Microtus_ochrogaster
ENSDARG00000007045	cnot4a	89	70.918	ENSMMOG00000014565	cnot4a	95	88.776	Mola_mola
ENSDARG00000007045	cnot4a	100	69.610	ENSMODG00000014068	CNOT4	100	70.106	Monodelphis_domestica
ENSDARG00000007045	cnot4a	93	80.220	ENSMALG00000011662	cnot4a	88	80.220	Monopterus_albus
ENSDARG00000007045	cnot4a	100	70.284	MGP_CAROLIEiJ_G0028217	Cnot4	100	70.789	Mus_caroli
ENSDARG00000007045	cnot4a	100	70.284	ENSMUSG00000038784	Cnot4	100	70.789	Mus_musculus
ENSDARG00000007045	cnot4a	100	70.284	MGP_PahariEiJ_G0021974	Cnot4	100	70.789	Mus_pahari
ENSDARG00000007045	cnot4a	100	70.284	MGP_SPRETEiJ_G0029216	Cnot4	100	70.789	Mus_spretus
ENSDARG00000007045	cnot4a	100	69.870	ENSMPUG00000004089	CNOT4	100	70.370	Mustela_putorius_furo
ENSDARG00000007045	cnot4a	93	69.330	ENSMLUG00000008260	CNOT4	100	69.816	Myotis_lucifugus
ENSDARG00000007045	cnot4a	100	69.870	ENSNGAG00000015030	Cnot4	100	70.370	Nannospalax_galili
ENSDARG00000007045	cnot4a	99	67.347	ENSNBRG00000021144	cnot4a	100	68.421	Neolamprologus_brichardi
ENSDARG00000007045	cnot4a	100	69.072	ENSNLEG00000013352	CNOT4	85	88.561	Nomascus_leucogenys
ENSDARG00000007045	cnot4a	78	68.831	ENSOPRG00000001023	CNOT4	82	68.831	Ochotona_princeps
ENSDARG00000007045	cnot4a	100	70.130	ENSODEG00000012975	CNOT4	100	70.635	Octodon_degus
ENSDARG00000007045	cnot4a	100	77.323	ENSONIG00000008656	cnot4a	100	76.894	Oreochromis_niloticus
ENSDARG00000007045	cnot4a	100	69.610	ENSOANG00000005006	CNOT4	100	70.106	Ornithorhynchus_anatinus
ENSDARG00000007045	cnot4a	100	69.870	ENSOCUG00000013448	CNOT4	100	70.370	Oryctolagus_cuniculus
ENSDARG00000007045	cnot4a	100	76.427	ENSORLG00000003727	cnot4a	100	75.682	Oryzias_latipes
ENSDARG00000007045	cnot4a	94	88.851	ENSORLG00020015684	cnot4a	100	76.404	Oryzias_latipes_hni
ENSDARG00000007045	cnot4a	100	76.675	ENSORLG00015008470	cnot4a	100	75.931	Oryzias_latipes_hsok
ENSDARG00000007045	cnot4a	100	76.580	ENSOMEG00000011084	cnot4a	100	75.960	Oryzias_melastigma
ENSDARG00000007045	cnot4a	100	69.330	ENSOGAG00000015499	CNOT4	100	69.816	Otolemur_garnettii
ENSDARG00000007045	cnot4a	100	69.330	ENSOARG00000008803	CNOT4	100	69.816	Ovis_aries
ENSDARG00000007045	cnot4a	100	69.330	ENSPPAG00000041937	CNOT4	85	89.668	Pan_paniscus
ENSDARG00000007045	cnot4a	100	69.330	ENSPPRG00000023940	CNOT4	100	69.816	Panthera_pardus
ENSDARG00000007045	cnot4a	100	69.870	ENSPTIG00000016601	CNOT4	96	75.676	Panthera_tigris_altaica
ENSDARG00000007045	cnot4a	100	69.330	ENSPTRG00000019727	CNOT4	85	89.668	Pan_troglodytes
ENSDARG00000007045	cnot4a	100	69.330	ENSPANG00000017724	CNOT4	85	89.668	Papio_anubis
ENSDARG00000007045	cnot4a	100	71.046	ENSPKIG00000018137	cnot4a	100	89.744	Paramormyrops_kingsleyae
ENSDARG00000007045	cnot4a	100	70.698	ENSPSIG00000011256	CNOT4	100	70.324	Pelodiscus_sinensis
ENSDARG00000007045	cnot4a	93	74.107	ENSPMGG00000005671	cnot4a	100	74.107	Periophthalmus_magnuspinnatus
ENSDARG00000007045	cnot4a	100	70.284	ENSPEMG00000021566	Cnot4	100	70.789	Peromyscus_maniculatus_bairdii
ENSDARG00000007045	cnot4a	100	69.610	ENSPCIG00000029622	CNOT4	96	70.106	Phascolarctos_cinereus
ENSDARG00000007045	cnot4a	100	76.885	ENSPFOG00000002228	cnot4a	100	76.267	Poecilia_formosa
ENSDARG00000007045	cnot4a	100	77.009	ENSPLAG00000001780	cnot4a	100	76.391	Poecilia_latipinna
ENSDARG00000007045	cnot4a	100	76.638	ENSPMEG00000006852	cnot4a	100	76.020	Poecilia_mexicana
ENSDARG00000007045	cnot4a	100	77.323	ENSPREG00000008171	cnot4a	100	76.580	Poecilia_reticulata
ENSDARG00000007045	cnot4a	100	69.870	ENSPPYG00000018026	CNOT4	100	70.370	Pongo_abelii
ENSDARG00000007045	cnot4a	100	69.330	ENSPCOG00000019907	CNOT4	100	75.316	Propithecus_coquereli
ENSDARG00000007045	cnot4a	94	69.330	ENSPVAG00000004905	CNOT4	93	69.816	Pteropus_vampyrus
ENSDARG00000007045	cnot4a	100	77.267	ENSPNYG00000004276	cnot4a	100	76.894	Pundamilia_nyererei
ENSDARG00000007045	cnot4a	100	88.387	ENSPNAG00000020433	cnot4a	100	94.853	Pygocentrus_nattereri
ENSDARG00000007045	cnot4a	100	73.684	ENSPNAG00000008679	cnot4b	88	93.382	Pygocentrus_nattereri
ENSDARG00000007045	cnot4a	100	70.284	ENSRNOG00000010795	Cnot4	100	70.789	Rattus_norvegicus
ENSDARG00000007045	cnot4a	100	69.330	ENSRBIG00000043977	CNOT4	85	89.668	Rhinopithecus_bieti
ENSDARG00000007045	cnot4a	100	70.130	ENSSBOG00000020808	CNOT4	85	89.668	Saimiri_boliviensis_boliviensis
ENSDARG00000007045	cnot4a	100	69.610	ENSSHAG00000013639	CNOT4	100	70.106	Sarcophilus_harrisii
ENSDARG00000007045	cnot4a	85	92.446	ENSSFOG00015017285	CNOT4	100	87.086	Scleropages_formosus
ENSDARG00000007045	cnot4a	89	91.860	ENSSFOG00015002019	cnot4a	100	89.247	Scleropages_formosus
ENSDARG00000007045	cnot4a	100	78.607	ENSSMAG00000008614	cnot4a	100	77.861	Scophthalmus_maximus
ENSDARG00000007045	cnot4a	81	91.575	ENSSDUG00000018585	cnot4b	100	91.575	Seriola_dumerili
ENSDARG00000007045	cnot4a	100	78.829	ENSSDUG00000022635	cnot4a	100	78.207	Seriola_dumerili
ENSDARG00000007045	cnot4a	100	62.252	ENSSLDG00000014347	cnot4b	100	62.531	Seriola_lalandi_dorsalis
ENSDARG00000007045	cnot4a	100	78.829	ENSSLDG00000015770	cnot4a	100	78.207	Seriola_lalandi_dorsalis
ENSDARG00000007045	cnot4a	93	68.814	ENSSPUG00000004677	CNOT4	100	69.291	Sphenodon_punctatus
ENSDARG00000007045	cnot4a	100	78.758	ENSSPAG00000012329	cnot4a	100	78.012	Stegastes_partitus
ENSDARG00000007045	cnot4a	100	69.330	ENSSSCG00000021354	CNOT4	100	69.816	Sus_scrofa
ENSDARG00000007045	cnot4a	100	70.911	ENSTGUG00000009161	CNOT4	100	70.537	Taeniopygia_guttata
ENSDARG00000007045	cnot4a	100	77.625	ENSTRUG00000016861	cnot4a	100	77.000	Takifugu_rubripes
ENSDARG00000007045	cnot4a	100	72.489	ENSTNIG00000016000	cnot4a	100	71.397	Tetraodon_nigroviridis
ENSDARG00000007045	cnot4a	94	65.979	ENSTBEG00000002202	CNOT4	86	69.355	Tupaia_belangeri
ENSDARG00000007045	cnot4a	94	69.330	ENSTTRG00000005122	CNOT4	91	69.816	Tursiops_truncatus
ENSDARG00000007045	cnot4a	99	69.330	ENSUAMG00000026759	CNOT4	100	69.816	Ursus_americanus
ENSDARG00000007045	cnot4a	99	69.330	ENSUMAG00000015351	CNOT4	95	69.816	Ursus_maritimus
ENSDARG00000007045	cnot4a	100	69.330	ENSVVUG00000006200	CNOT4	100	70.370	Vulpes_vulpes
ENSDARG00000007045	cnot4a	79	70.706	ENSXETG00000010594	cnot4	100	70.706	Xenopus_tropicalis
ENSDARG00000007045	cnot4a	82	87.829	ENSXCOG00000020824	cnot4a	98	73.171	Xiphophorus_couchianus
ENSDARG00000007045	cnot4a	100	76.704	ENSXMAG00000016984	cnot4a	100	76.332	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004842	ubiquitin-protein transferase activity	21873635.	IBA	Function
GO:0004842	ubiquitin-protein transferase activity	-	IEA	Function
GO:0016567	protein ubiquitination	21873635.	IBA	Process
GO:0030014	CCR4-NOT complex	21873635.	IBA	Component
GO:0030014	CCR4-NOT complex	-	IEA	Component
GO:0046872	metal ion binding	-	IEA	Function