EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000007135 (Gene tree)
Gene ID
449540
Gene Symbol
cnot3a
Alias
fb73b06|fc17h07|wu:fb73b06|wu:fc17h07|zgc:92813
Full Name
CCR4-NOT transcription complex%2C subunit 3a
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
18151 bases
Position
chr16:32110195-32128345
Accession
ZDB-GENE-040927-6
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000118084Not3PF04065.156.8e-9611
ENSDARP00000092876Not3PF04065.156.9e-9611
ENSDARP00000118084NOT2_3_5PF04153.182e-3911
ENSDARP00000092876NOT2_3_5PF04153.182e-3911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000137699-4198XM_005158349ENSDARP00000118084901 (aa)XP_005158406E9QGK5
ENSDART00000102100-4220XM_021466678ENSDARP00000092876908 (aa)XP_021322353F1Q4L8
ENSDART00000133068-634--- (aa)--
Gene Model
Click here to download ENSDARG00000007135's gene model file
Pathways
Pathway IDPathway NameSource
dre03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000007135's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000007135cnot3a6888.387ENSG00000088038CNOT310094.330Homo_sapiens
ENSDARG00000007135cnot3a5885.467ENSAPOG00000015002cnot3b8978.661Acanthochromis_polyacanthus
ENSDARG00000007135cnot3a5885.357ENSAPOG00000015499CNOT39285.053Acanthochromis_polyacanthus
ENSDARG00000007135cnot3a6888.710ENSAMEG00000004528CNOT38589.836Ailuropoda_melanoleuca
ENSDARG00000007135cnot3a6891.964ENSACIG00000003652cnot3b9991.964Amphilophus_citrinellus
ENSDARG00000007135cnot3a10073.377ENSACIG00000006635cnot3a10075.216Amphilophus_citrinellus
ENSDARG00000007135cnot3a9761.836ENSAOCG00000018385-9977.033Amphiprion_ocellaris
ENSDARG00000007135cnot3a9764.751ENSAPEG00000002640cnot3b9993.333Amphiprion_percula
ENSDARG00000007135cnot3a10075.597ENSATEG00000022737cnot3a10076.190Anabas_testudineus
ENSDARG00000007135cnot3a10067.368ENSATEG00000015777cnot3b10066.386Anabas_testudineus
ENSDARG00000007135cnot3a7389.610ENSACAG00000016085CNOT38989.836Anolis_carolinensis
ENSDARG00000007135cnot3a6988.387ENSANAG00000025756CNOT38589.508Aotus_nancymaae
ENSDARG00000007135cnot3a10074.810ENSACLG00000021136cnot3a10075.136Astatotilapia_calliptera
ENSDARG00000007135cnot3a10067.439ENSACLG00000016702cnot3b10065.300Astatotilapia_calliptera
ENSDARG00000007135cnot3a10083.589ENSAMXG00000012359cnot3a10083.589Astyanax_mexicanus
ENSDARG00000007135cnot3a10067.660ENSAMXG00000009447cnot3b9787.634Astyanax_mexicanus
ENSDARG00000007135cnot3a6888.387ENSBTAG00000014900CNOT38689.508Bos_taurus
ENSDARG00000007135cnot3a6988.387ENSCJAG00000001094CNOT38589.508Callithrix_jacchus
ENSDARG00000007135cnot3a7380.453ENSCAFG00000002699CNOT38589.508Canis_familiaris
ENSDARG00000007135cnot3a7380.453ENSCAFG00020018359CNOT38589.508Canis_lupus_dingo
ENSDARG00000007135cnot3a6386.408ENSCHIG00000015302CNOT37787.500Capra_hircus
ENSDARG00000007135cnot3a6988.387ENSTSYG00000008058CNOT38589.508Carlito_syrichta
ENSDARG00000007135cnot3a6988.387ENSCAPG00000009533CNOT38589.508Cavia_aperea
ENSDARG00000007135cnot3a6988.387ENSCPOG00000020741CNOT38589.508Cavia_porcellus
ENSDARG00000007135cnot3a6988.387ENSCCAG00000036290CNOT38589.508Cebus_capucinus
ENSDARG00000007135cnot3a6888.387ENSCATG00000030324CNOT38589.508Cercocebus_atys
ENSDARG00000007135cnot3a6888.387ENSCLAG00000003302CNOT310085.366Chinchilla_lanigera
ENSDARG00000007135cnot3a6888.387ENSCSAG00000001900CNOT38589.508Chlorocebus_sabaeus
ENSDARG00000007135cnot3a7089.286ENSCPBG00000011655CNOT39889.836Chrysemys_picta_bellii
ENSDARG00000007135cnot3a6668.595ENSCING00000000293-7568.595Ciona_intestinalis
ENSDARG00000007135cnot3a6888.387ENSCANG00000013408CNOT38589.508Colobus_angolensis_palliatus
ENSDARG00000007135cnot3a7280.737ENSCGRG00001000855Cnot38589.836Cricetulus_griseus_chok1gshd
ENSDARG00000007135cnot3a10060.220ENSCSEG00000016892cnot3b10059.027Cynoglossus_semilaevis
ENSDARG00000007135cnot3a10073.583ENSCSEG00000003574cnot3a10074.493Cynoglossus_semilaevis
ENSDARG00000007135cnot3a10072.283ENSCVAG00000008168cnot3a10072.391Cyprinodon_variegatus
ENSDARG00000007135cnot3a10065.554ENSCVAG00000022122cnot3b10064.407Cyprinodon_variegatus
ENSDARG00000007135cnot3a6988.065ENSDNOG00000045972CNOT38589.180Dasypus_novemcinctus
ENSDARG00000007135cnot3a6988.387ENSDORG00000008021Cnot310080.460Dipodomys_ordii
ENSDARG00000007135cnot3a52100.000ENSETEG00000006305CNOT363100.000Echinops_telfairi
ENSDARG00000007135cnot3a6888.387ENSEASG00005021591CNOT38489.508Equus_asinus_asinus
ENSDARG00000007135cnot3a6888.387ENSECAG00000023181CNOT38489.508Equus_caballus
ENSDARG00000007135cnot3a10071.748ENSELUG00000014743cnot3a10072.157Esox_lucius
ENSDARG00000007135cnot3a10067.647ENSELUG00000000953cnot3b10065.762Esox_lucius
ENSDARG00000007135cnot3a6888.387ENSFCAG00000014042CNOT38589.508Felis_catus
ENSDARG00000007135cnot3a10072.609ENSFHEG00000023166cnot3a10073.043Fundulus_heteroclitus
ENSDARG00000007135cnot3a10064.787ENSFHEG00000001696cnot3b10063.344Fundulus_heteroclitus
ENSDARG00000007135cnot3a9471.828ENSGMOG00000005365cnot3a9871.478Gadus_morhua
ENSDARG00000007135cnot3a10067.316ENSGAFG00000003459cnot3b10065.330Gambusia_affinis
ENSDARG00000007135cnot3a10071.895ENSGAFG00000013094cnot3a10073.781Gambusia_affinis
ENSDARG00000007135cnot3a9470.698ENSGACG00000011489cnot3a9871.678Gasterosteus_aculeatus
ENSDARG00000007135cnot3a6678.832ENSGACG00000009395cnot3b5578.832Gasterosteus_aculeatus
ENSDARG00000007135cnot3a6789.105ENSGAGG00000012677CNOT38887.615Gopherus_agassizii
ENSDARG00000007135cnot3a6888.387ENSGGOG00000012996CNOT38589.508Gorilla_gorilla
ENSDARG00000007135cnot3a10074.919ENSHBUG00000005275cnot3a10075.244Haplochromis_burtoni
ENSDARG00000007135cnot3a9960.893ENSHBUG00000019699cnot3b9958.961Haplochromis_burtoni
ENSDARG00000007135cnot3a6888.387ENSHGLG00000008821CNOT310080.460Heterocephalus_glaber_female
ENSDARG00000007135cnot3a6084.674ENSHGLG00100006181CNOT310080.460Heterocephalus_glaber_male
ENSDARG00000007135cnot3a9086.486ENSHCOG00000020968cnot3a10074.002Hippocampus_comes
ENSDARG00000007135cnot3a10072.113ENSIPUG00000000167cnot310080.328Ictalurus_punctatus
ENSDARG00000007135cnot3a10065.326ENSIPUG00000009046cnot3b10063.943Ictalurus_punctatus
ENSDARG00000007135cnot3a6988.387ENSSTOG00000028248CNOT38589.508Ictidomys_tridecemlineatus
ENSDARG00000007135cnot3a6890.132ENSJJAG00000014594Cnot310080.460Jaculus_jaculus
ENSDARG00000007135cnot3a10068.216ENSKMAG00000018723cnot3b10068.143Kryptolebias_marmoratus
ENSDARG00000007135cnot3a10074.138ENSKMAG00000004863cnot3a10073.894Kryptolebias_marmoratus
ENSDARG00000007135cnot3a9666.853ENSLBEG00000018278cnot3b9965.440Labrus_bergylta
ENSDARG00000007135cnot3a6692.969ENSLBEG00000017296cnot3a6593.333Labrus_bergylta
ENSDARG00000007135cnot3a6987.419ENSLACG00000009742CNOT38988.525Latimeria_chalumnae
ENSDARG00000007135cnot3a5292.771ENSLOCG00000000005cnot3b8490.110Lepisosteus_oculatus
ENSDARG00000007135cnot3a6987.781ENSLAFG00000022133CNOT38588.889Loxodonta_africana
ENSDARG00000007135cnot3a7972.953ENSMFAG00000040073CNOT38589.508Macaca_fascicularis
ENSDARG00000007135cnot3a6192.857ENSMMUG00000009698CNOT310096.078Macaca_mulatta
ENSDARG00000007135cnot3a6888.387ENSMNEG00000036750CNOT38589.508Macaca_nemestrina
ENSDARG00000007135cnot3a6889.803ENSMLEG00000036579CNOT38489.508Mandrillus_leucophaeus
ENSDARG00000007135cnot3a10067.481ENSMAMG00000019357cnot3b10066.456Mastacembelus_armatus
ENSDARG00000007135cnot3a10074.674ENSMAMG00000019397cnot3a10075.054Mastacembelus_armatus
ENSDARG00000007135cnot3a10067.548ENSMZEG00005002466cnot3b10065.612Maylandia_zebra
ENSDARG00000007135cnot3a10074.810ENSMZEG00005016304cnot3a10075.136Maylandia_zebra
ENSDARG00000007135cnot3a7280.737ENSMAUG00000014996Cnot38589.836Mesocricetus_auratus
ENSDARG00000007135cnot3a6987.342ENSMICG00000002370CNOT38489.508Microcebus_murinus
ENSDARG00000007135cnot3a10072.258ENSMMOG00000016446cnot3a10074.512Mola_mola
ENSDARG00000007135cnot3a6890.598ENSMMOG00000013086cnot3b9990.598Mola_mola
ENSDARG00000007135cnot3a6089.803ENSMODG00000004066CNOT37689.508Monodelphis_domestica
ENSDARG00000007135cnot3a7186.149ENSMALG00000004936cnot3b9285.859Monopterus_albus
ENSDARG00000007135cnot3a10074.674ENSMALG00000009204cnot3a10074.373Monopterus_albus
ENSDARG00000007135cnot3a6988.710MGP_CAROLIEiJ_G0029095Cnot310097.000Mus_caroli
ENSDARG00000007135cnot3a6988.710ENSMUSG00000035632Cnot310097.000Mus_musculus
ENSDARG00000007135cnot3a7380.737MGP_PahariEiJ_G0020964Cnot310097.000Mus_pahari
ENSDARG00000007135cnot3a6988.710MGP_SPRETEiJ_G0030148Cnot310097.000Mus_spretus
ENSDARG00000007135cnot3a6888.387ENSMPUG00000010352CNOT38589.508Mustela_putorius_furo
ENSDARG00000007135cnot3a7281.871ENSNGAG00000013266Cnot38589.508Nannospalax_galili
ENSDARG00000007135cnot3a8485.906ENSNBRG00000003336cnot3b9889.823Neolamprologus_brichardi
ENSDARG00000007135cnot3a10072.579ENSNBRG00000002401cnot3a10073.885Neolamprologus_brichardi
ENSDARG00000007135cnot3a6888.387ENSNLEG00000006272CNOT38489.508Nomascus_leucogenys
ENSDARG00000007135cnot3a6886.731ENSODEG00000000705CNOT310088.608Octodon_degus
ENSDARG00000007135cnot3a10074.540ENSONIG00000006568cnot3a10075.027Oreochromis_niloticus
ENSDARG00000007135cnot3a10067.650ENSONIG00000007047cnot3b10066.596Oreochromis_niloticus
ENSDARG00000007135cnot3a7183.036ENSOCUG00000007691CNOT38589.508Oryctolagus_cuniculus
ENSDARG00000007135cnot3a10065.838ENSORLG00000005982cnot3b10065.561Oryzias_latipes
ENSDARG00000007135cnot3a10073.152ENSORLG00000011174cnot3a10074.155Oryzias_latipes
ENSDARG00000007135cnot3a10067.238ENSORLG00020005779cnot3b10065.525Oryzias_latipes_hni
ENSDARG00000007135cnot3a10072.777ENSORLG00020008009cnot3a10073.776Oryzias_latipes_hni
ENSDARG00000007135cnot3a10073.123ENSORLG00015013729cnot3a10074.127Oryzias_latipes_hsok
ENSDARG00000007135cnot3a10065.773ENSORLG00015019021cnot3b10065.213Oryzias_latipes_hsok
ENSDARG00000007135cnot3a10067.676ENSOMEG00000015557cnot3b10066.129Oryzias_melastigma
ENSDARG00000007135cnot3a10074.078ENSOMEG00000010309cnot3a10073.810Oryzias_melastigma
ENSDARG00000007135cnot3a7085.538ENSOGAG00000006945CNOT38589.508Otolemur_garnettii
ENSDARG00000007135cnot3a6888.387ENSPPAG00000002748CNOT38589.508Pan_paniscus
ENSDARG00000007135cnot3a6888.387ENSPPRG00000011705CNOT38589.508Panthera_pardus
ENSDARG00000007135cnot3a6289.933ENSPTIG00000008781CNOT39689.933Panthera_tigris_altaica
ENSDARG00000007135cnot3a6888.387ENSPTRG00000046717-8589.508Pan_troglodytes
ENSDARG00000007135cnot3a6888.387ENSPTRG00000011444CNOT38589.508Pan_troglodytes
ENSDARG00000007135cnot3a6888.387ENSPANG00000009375CNOT38589.508Papio_anubis
ENSDARG00000007135cnot3a10065.820ENSPKIG00000011733CNOT310064.873Paramormyrops_kingsleyae
ENSDARG00000007135cnot3a6195.299ENSPKIG00000015967-10090.438Paramormyrops_kingsleyae
ENSDARG00000007135cnot3a9859.416ENSPMGG00000022539cnot3b9957.843Periophthalmus_magnuspinnatus
ENSDARG00000007135cnot3a7381.020ENSPEMG00000024185Cnot38589.836Peromyscus_maniculatus_bairdii
ENSDARG00000007135cnot3a6989.474ENSPCIG00000023018CNOT39089.180Phascolarctos_cinereus
ENSDARG00000007135cnot3a10073.152ENSPFOG00000008693cnot3a9789.355Poecilia_formosa
ENSDARG00000007135cnot3a10067.606ENSPFOG00000007168cnot3b10065.547Poecilia_formosa
ENSDARG00000007135cnot3a10073.203ENSPLAG00000013324cnot3a10073.564Poecilia_latipinna
ENSDARG00000007135cnot3a10067.606ENSPLAG00000013457cnot3b10065.547Poecilia_latipinna
ENSDARG00000007135cnot3a10067.714ENSPMEG00000010184cnot3b10065.655Poecilia_mexicana
ENSDARG00000007135cnot3a10072.905ENSPMEG00000017718cnot3a10073.377Poecilia_mexicana
ENSDARG00000007135cnot3a9963.407ENSPREG00000000662cnot3b9762.951Poecilia_reticulata
ENSDARG00000007135cnot3a9287.387ENSPREG00000007592cnot3a10093.089Poecilia_reticulata
ENSDARG00000007135cnot3a6888.065ENSPPYG00000010372CNOT38589.180Pongo_abelii
ENSDARG00000007135cnot3a5293.220ENSPCAG00000011999CNOT35693.220Procavia_capensis
ENSDARG00000007135cnot3a6987.342ENSPCOG00000017673CNOT38489.508Propithecus_coquereli
ENSDARG00000007135cnot3a6888.065ENSPVAG00000015564CNOT38589.180Pteropus_vampyrus
ENSDARG00000007135cnot3a10074.919ENSPNYG00000002282cnot3a10075.244Pundamilia_nyererei
ENSDARG00000007135cnot3a9962.407ENSPNYG00000003358cnot3b9960.574Pundamilia_nyererei
ENSDARG00000007135cnot3a10082.770ENSPNAG00000017679cnot3a9796.250Pygocentrus_nattereri
ENSDARG00000007135cnot3a10067.167ENSPNAG00000027459cnot3b10066.346Pygocentrus_nattereri
ENSDARG00000007135cnot3a7380.737ENSRNOG00000053234Cnot38589.836Rattus_norvegicus
ENSDARG00000007135cnot3a7972.953ENSRBIG00000031025CNOT38589.508Rhinopithecus_bieti
ENSDARG00000007135cnot3a7973.201ENSRROG00000003872CNOT38589.508Rhinopithecus_roxellana
ENSDARG00000007135cnot3a6889.803ENSSBOG00000030268CNOT38589.508Saimiri_boliviensis_boliviensis
ENSDARG00000007135cnot3a10069.674ENSSFOG00015000248cnot310069.273Scleropages_formosus
ENSDARG00000007135cnot3a10068.489ENSSFOG00015019203-10067.091Scleropages_formosus
ENSDARG00000007135cnot3a10074.784ENSSMAG00000013235cnot3a10075.376Scophthalmus_maximus
ENSDARG00000007135cnot3a10067.513ENSSMAG00000016031cnot3b10065.373Scophthalmus_maximus
ENSDARG00000007135cnot3a10068.538ENSSDUG00000003428cnot3b10067.687Seriola_dumerili
ENSDARG00000007135cnot3a8597.009ENSSDUG00000008181cnot3a10096.203Seriola_dumerili
ENSDARG00000007135cnot3a9675.730ENSSLDG00000014733cnot3a9976.233Seriola_lalandi_dorsalis
ENSDARG00000007135cnot3a10068.538ENSSLDG00000014376cnot3b10067.687Seriola_lalandi_dorsalis
ENSDARG00000007135cnot3a8276.081ENSSPUG00000008510CNOT38989.508Sphenodon_punctatus
ENSDARG00000007135cnot3a10067.797ENSSPAG00000001429cnot3b10068.293Stegastes_partitus
ENSDARG00000007135cnot3a9675.056ENSSPAG00000003858cnot3a9093.750Stegastes_partitus
ENSDARG00000007135cnot3a6888.387ENSSSCG00000003264CNOT38489.508Sus_scrofa
ENSDARG00000007135cnot3a10076.503ENSTRUG00000015732cnot3a10077.402Takifugu_rubripes
ENSDARG00000007135cnot3a9986.813ENSTRUG00000007248cnot3b9185.106Takifugu_rubripes
ENSDARG00000007135cnot3a9464.082ENSTNIG00000005663cnot3b10060.904Tetraodon_nigroviridis
ENSDARG00000007135cnot3a9473.310ENSTNIG00000008082cnot3a10072.442Tetraodon_nigroviridis
ENSDARG00000007135cnot3a6888.710ENSUAMG00000005234CNOT38589.836Ursus_americanus
ENSDARG00000007135cnot3a6288.926ENSUMAG00000010934CNOT38993.277Ursus_maritimus
ENSDARG00000007135cnot3a7380.453ENSVVUG00000008239CNOT38489.508Vulpes_vulpes
ENSDARG00000007135cnot3a7587.908ENSXETG00000003166cnot38987.702Xenopus_tropicalis
ENSDARG00000007135cnot3a9663.636ENSXCOG00000018976cnot3b9962.835Xiphophorus_couchianus
ENSDARG00000007135cnot3a9387.387ENSXCOG00000019460cnot3a9987.387Xiphophorus_couchianus
ENSDARG00000007135cnot3a10066.811ENSXMAG00000014176cnot3b10064.637Xiphophorus_maculatus
ENSDARG00000007135cnot3a10071.943ENSXMAG00000012273cnot3a10072.391Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000932P-body21873635.IBAComponent
GO:0005634nucleus-IEAComponent
GO:0006355regulation of transcription, DNA-templated-IEAProcess
GO:0017148negative regulation of translation21873635.IBAProcess
GO:0030015CCR4-NOT core complex21873635.IBAComponent
GO:0030015CCR4-NOT core complex-IEAComponent

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