EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000007430 (Gene tree)
Gene ID: 492816
Gene Symbol: prdm12b
Alias: zgc:101606
Full Name: PR domain containing 12b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 5450 bases
Position: chr5:63509761-63515210
Accession: ZDB-GENE-041114-172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000015394	zf-C2H2	PF00096.26	7.7e-12	1	2
ENSDARP00000015394	zf-C2H2	PF00096.26	7.7e-12	2	2
ENSDARP00000015394	zf-met	PF12874.7	9.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000022348	-	3027	-	ENSDARP00000015394	366 (aa)	-	Q5U3V3

Gene Model

Click here to download ENSDARG00000007430's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000007430's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000007430	prdm12b	93	85.965	ENSG00000130711	PRDM12	99	81.333	Homo_sapiens
ENSDARG00000007430	prdm12b	100	67.467	ENSAPOG00000018234	-	100	67.733	Acanthochromis_polyacanthus
ENSDARG00000007430	prdm12b	100	80.729	ENSAPOG00000016051	prdm12b	100	82.031	Acanthochromis_polyacanthus
ENSDARG00000007430	prdm12b	90	85.714	ENSAMEG00000016234	PRDM12	99	85.714	Ailuropoda_melanoleuca
ENSDARG00000007430	prdm12b	100	82.540	ENSACIG00000019578	prdm12b	100	83.069	Amphilophus_citrinellus
ENSDARG00000007430	prdm12b	100	80.570	ENSACIG00000005193	-	100	81.347	Amphilophus_citrinellus
ENSDARG00000007430	prdm12b	100	81.579	ENSAOCG00000015040	prdm12b	100	82.632	Amphiprion_ocellaris
ENSDARG00000007430	prdm12b	100	82.228	ENSAPEG00000015092	prdm12b	100	83.289	Amphiprion_percula
ENSDARG00000007430	prdm12b	100	75.194	ENSAPEG00000022849	-	99	77.778	Amphiprion_percula
ENSDARG00000007430	prdm12b	100	80.779	ENSATEG00000014595	-	100	81.818	Anabas_testudineus
ENSDARG00000007430	prdm12b	95	85.260	ENSANAG00000020616	PRDM12	99	85.260	Aotus_nancymaae
ENSDARG00000007430	prdm12b	100	78.426	ENSACLG00000007631	-	100	79.949	Astatotilapia_calliptera
ENSDARG00000007430	prdm12b	100	84.239	ENSACLG00000011876	prdm12b	100	84.239	Astatotilapia_calliptera
ENSDARG00000007430	prdm12b	100	84.011	ENSAMXG00000008540	PRDM12	100	84.011	Astyanax_mexicanus
ENSDARG00000007430	prdm12b	100	91.081	ENSAMXG00000033665	prdm12b	100	92.432	Astyanax_mexicanus
ENSDARG00000007430	prdm12b	93	86.257	ENSBTAG00000023797	PRDM12	99	82.038	Bos_taurus
ENSDARG00000007430	prdm12b	93	85.673	ENSCJAG00000020540	PRDM12	99	82.337	Callithrix_jacchus
ENSDARG00000007430	prdm12b	82	86.667	ENSCAFG00000023076	PRDM12	99	81.138	Canis_familiaris
ENSDARG00000007430	prdm12b	93	86.257	ENSCAFG00020024046	PRDM12	99	81.383	Canis_lupus_dingo
ENSDARG00000007430	prdm12b	93	86.257	ENSCHIG00000025005	PRDM12	99	81.818	Capra_hircus
ENSDARG00000007430	prdm12b	87	87.066	ENSCPOG00000005901	PRDM12	95	87.066	Cavia_porcellus
ENSDARG00000007430	prdm12b	93	85.673	ENSCCAG00000037485	PRDM12	99	81.941	Cebus_capucinus
ENSDARG00000007430	prdm12b	93	85.673	ENSCATG00000020327	PRDM12	99	81.941	Cercocebus_atys
ENSDARG00000007430	prdm12b	93	85.380	ENSCLAG00000005499	PRDM12	91	85.380	Chinchilla_lanigera
ENSDARG00000007430	prdm12b	93	85.673	ENSCSAG00000014756	PRDM12	99	81.769	Chlorocebus_sabaeus
ENSDARG00000007430	prdm12b	100	85.792	ENSCPBG00000022628	PRDM12	99	85.792	Chrysemys_picta_bellii
ENSDARG00000007430	prdm12b	93	85.965	ENSCGRG00001015005	Prdm12	99	81.283	Cricetulus_griseus_chok1gshd
ENSDARG00000007430	prdm12b	100	82.210	ENSCVAG00000017166	prdm12b	100	82.796	Cyprinodon_variegatus
ENSDARG00000007430	prdm12b	100	76.923	ENSCVAG00000000944	-	100	78.974	Cyprinodon_variegatus
ENSDARG00000007430	prdm12b	93	85.714	ENSDNOG00000042302	PRDM12	99	82.432	Dasypus_novemcinctus
ENSDARG00000007430	prdm12b	91	64.225	ENSEBUG00000016780	prdm12b	79	65.634	Eptatretus_burgeri
ENSDARG00000007430	prdm12b	95	85.549	ENSEASG00005008472	PRDM12	99	82.480	Equus_asinus_asinus
ENSDARG00000007430	prdm12b	95	85.838	ENSECAG00000005933	PRDM12	99	82.749	Equus_caballus
ENSDARG00000007430	prdm12b	100	81.744	ENSELUG00000013674	PRDM12	100	80.952	Esox_lucius
ENSDARG00000007430	prdm12b	100	90.296	ENSELUG00000009905	prdm12b	100	90.296	Esox_lucius
ENSDARG00000007430	prdm12b	93	86.257	ENSFCAG00000043086	PRDM12	99	82.480	Felis_catus
ENSDARG00000007430	prdm12b	100	86.339	ENSFALG00000001445	PRDM12	89	86.339	Ficedula_albicollis
ENSDARG00000007430	prdm12b	100	80.563	ENSFHEG00000007746	-	100	80.563	Fundulus_heteroclitus
ENSDARG00000007430	prdm12b	100	81.551	ENSFHEG00000003944	prdm12b	100	82.400	Fundulus_heteroclitus
ENSDARG00000007430	prdm12b	100	83.871	ENSGMOG00000011797	prdm12b	100	83.871	Gadus_morhua
ENSDARG00000007430	prdm12b	100	86.339	ENSGALG00000003895	PRDM12	99	86.339	Gallus_gallus
ENSDARG00000007430	prdm12b	100	82.400	ENSGAFG00000010827	prdm12b	99	82.133	Gambusia_affinis
ENSDARG00000007430	prdm12b	100	83.602	ENSGACG00000016713	prdm12b	99	83.602	Gasterosteus_aculeatus
ENSDARG00000007430	prdm12b	100	85.792	ENSGAGG00000014083	PRDM12	99	85.792	Gopherus_agassizii
ENSDARG00000007430	prdm12b	93	85.673	ENSGGOG00000010568	PRDM12	99	81.016	Gorilla_gorilla
ENSDARG00000007430	prdm12b	100	83.777	ENSHBUG00000022878	prdm12b	100	83.777	Haplochromis_burtoni
ENSDARG00000007430	prdm12b	100	78.426	ENSHBUG00000022537	-	93	79.949	Haplochromis_burtoni
ENSDARG00000007430	prdm12b	90	87.234	ENSHGLG00000013939	PRDM12	99	80.161	Heterocephalus_glaber_female
ENSDARG00000007430	prdm12b	100	74.667	ENSHCOG00000021167	-	100	74.667	Hippocampus_comes
ENSDARG00000007430	prdm12b	90	82.749	ENSHCOG00000003663	prdm12b	100	77.551	Hippocampus_comes
ENSDARG00000007430	prdm12b	100	80.654	ENSIPUG00000019544	PRDM12	100	80.654	Ictalurus_punctatus
ENSDARG00000007430	prdm12b	100	89.946	ENSIPUG00000017053	prdm12b	100	90.489	Ictalurus_punctatus
ENSDARG00000007430	prdm12b	97	84.181	ENSSTOG00000005986	PRDM12	90	84.181	Ictidomys_tridecemlineatus
ENSDARG00000007430	prdm12b	91	87.349	ENSJJAG00000005424	Prdm12	98	88.146	Jaculus_jaculus
ENSDARG00000007430	prdm12b	100	77.228	ENSKMAG00000016921	prdm12b	100	77.475	Kryptolebias_marmoratus
ENSDARG00000007430	prdm12b	95	83.429	ENSKMAG00000021205	-	93	83.429	Kryptolebias_marmoratus
ENSDARG00000007430	prdm12b	100	80.263	ENSLBEG00000007776	-	100	82.105	Labrus_bergylta
ENSDARG00000007430	prdm12b	100	82.804	ENSLBEG00000017769	prdm12b	100	82.804	Labrus_bergylta
ENSDARG00000007430	prdm12b	100	86.066	ENSLACG00000017560	PRDM12	99	86.066	Latimeria_chalumnae
ENSDARG00000007430	prdm12b	100	91.257	ENSLOCG00000005429	prdm12b	99	91.257	Lepisosteus_oculatus
ENSDARG00000007430	prdm12b	93	84.438	ENSLAFG00000006979	PRDM12	95	82.692	Loxodonta_africana
ENSDARG00000007430	prdm12b	93	85.673	ENSMFAG00000040322	PRDM12	99	81.117	Macaca_fascicularis
ENSDARG00000007430	prdm12b	93	85.673	ENSMNEG00000037234	PRDM12	99	81.941	Macaca_nemestrina
ENSDARG00000007430	prdm12b	100	78.372	ENSMAMG00000018988	-	100	80.407	Mastacembelus_armatus
ENSDARG00000007430	prdm12b	100	83.245	ENSMAMG00000013212	prdm12b	100	83.777	Mastacembelus_armatus
ENSDARG00000007430	prdm12b	100	78.030	ENSMZEG00005000415	PRDM12	100	79.545	Maylandia_zebra
ENSDARG00000007430	prdm12b	98	86.111	ENSMGAG00000005438	PRDM12	98	86.111	Meleagris_gallopavo
ENSDARG00000007430	prdm12b	100	80.902	ENSMAUG00000013040	Prdm12	99	81.501	Mesocricetus_auratus
ENSDARG00000007430	prdm12b	95	85.838	ENSMICG00000015480	PRDM12	99	82.258	Microcebus_murinus
ENSDARG00000007430	prdm12b	98	84.123	ENSMOCG00000021026	Prdm12	92	85.838	Microtus_ochrogaster
ENSDARG00000007430	prdm12b	100	85.831	ENSMODG00000012108	PRDM12	99	85.831	Monodelphis_domestica
ENSDARG00000007430	prdm12b	100	71.237	ENSMALG00000021901	prdm12b	99	71.237	Monopterus_albus
ENSDARG00000007430	prdm12b	93	86.257	MGP_CAROLIEiJ_G0023414	Prdm12	99	82.038	Mus_caroli
ENSDARG00000007430	prdm12b	93	86.257	ENSMUSG00000079466	Prdm12	99	82.038	Mus_musculus
ENSDARG00000007430	prdm12b	93	86.257	MGP_PahariEiJ_G0024871	Prdm12	99	82.038	Mus_pahari
ENSDARG00000007430	prdm12b	93	86.257	MGP_SPRETEiJ_G0024331	Prdm12	99	82.038	Mus_spretus
ENSDARG00000007430	prdm12b	90	87.234	ENSNGAG00000018480	Prdm12	99	81.148	Nannospalax_galili
ENSDARG00000007430	prdm12b	100	75.532	ENSNBRG00000024312	-	100	76.064	Neolamprologus_brichardi
ENSDARG00000007430	prdm12b	100	82.586	ENSNBRG00000006727	prdm12b	100	83.113	Neolamprologus_brichardi
ENSDARG00000007430	prdm12b	100	77.112	ENSMEUG00000003828	PRDM12	99	77.112	Notamacropus_eugenii
ENSDARG00000007430	prdm12b	90	87.234	ENSOPRG00000008680	PRDM12	98	87.234	Ochotona_princeps
ENSDARG00000007430	prdm12b	98	83.240	ENSODEG00000016282	PRDM12	65	83.240	Octodon_degus
ENSDARG00000007430	prdm12b	63	85.217	ENSOANG00000001043	PRDM12	100	85.217	Ornithorhynchus_anatinus
ENSDARG00000007430	prdm12b	88	83.489	ENSOCUG00000008241	PRDM12	99	83.489	Oryctolagus_cuniculus
ENSDARG00000007430	prdm12b	100	77.949	ENSORLG00000017558	-	100	80.513	Oryzias_latipes
ENSDARG00000007430	prdm12b	100	80.688	ENSORLG00000007114	prdm12b	99	80.688	Oryzias_latipes
ENSDARG00000007430	prdm12b	100	77.749	ENSORLG00020013167	-	100	80.307	Oryzias_latipes_hni
ENSDARG00000007430	prdm12b	100	80.526	ENSORLG00020019565	prdm12b	99	80.789	Oryzias_latipes_hni
ENSDARG00000007430	prdm12b	100	81.217	ENSORLG00015007621	prdm12b	99	81.217	Oryzias_latipes_hsok
ENSDARG00000007430	prdm12b	100	77.692	ENSORLG00015003435	-	100	80.256	Oryzias_latipes_hsok
ENSDARG00000007430	prdm12b	100	80.628	ENSOMEG00000004134	prdm12b	99	80.628	Oryzias_melastigma
ENSDARG00000007430	prdm12b	100	78.906	ENSOMEG00000007762	-	100	79.293	Oryzias_melastigma
ENSDARG00000007430	prdm12b	93	86.217	ENSOGAG00000007557	PRDM12	99	86.217	Otolemur_garnettii
ENSDARG00000007430	prdm12b	81	84.175	ENSPPAG00000031506	-	99	84.175	Pan_paniscus
ENSDARG00000007430	prdm12b	100	75.472	ENSPPRG00000023024	PRDM12	92	75.472	Panthera_pardus
ENSDARG00000007430	prdm12b	93	85.965	ENSPTRG00000021475	PRDM12	99	81.283	Pan_troglodytes
ENSDARG00000007430	prdm12b	93	85.965	ENSPTRG00000043324	-	99	81.283	Pan_troglodytes
ENSDARG00000007430	prdm12b	93	85.673	ENSPANG00000025967	PRDM12	99	81.941	Papio_anubis
ENSDARG00000007430	prdm12b	94	80.580	ENSPKIG00000004305	PRDM12	98	80.580	Paramormyrops_kingsleyae
ENSDARG00000007430	prdm12b	100	90.860	ENSPKIG00000007228	prdm12b	100	90.860	Paramormyrops_kingsleyae
ENSDARG00000007430	prdm12b	100	84.699	ENSPSIG00000006739	PRDM12	99	84.699	Pelodiscus_sinensis
ENSDARG00000007430	prdm12b	100	83.288	ENSPMGG00000008867	prdm12b	99	83.871	Periophthalmus_magnuspinnatus
ENSDARG00000007430	prdm12b	100	76.471	ENSPMGG00000002356	-	100	77.099	Periophthalmus_magnuspinnatus
ENSDARG00000007430	prdm12b	98	81.818	ENSPEMG00000009969	Prdm12	97	81.818	Peromyscus_maniculatus_bairdii
ENSDARG00000007430	prdm12b	100	85.831	ENSPCIG00000024119	PRDM12	99	85.831	Phascolarctos_cinereus
ENSDARG00000007430	prdm12b	100	82.447	ENSPFOG00000019841	prdm12b	100	82.447	Poecilia_formosa
ENSDARG00000007430	prdm12b	100	81.481	ENSPLAG00000016626	prdm12b	99	82.275	Poecilia_latipinna
ENSDARG00000007430	prdm12b	98	80.759	ENSPMEG00000016698	prdm12b	100	81.301	Poecilia_mexicana
ENSDARG00000007430	prdm12b	97	77.260	ENSPREG00000003211	-	96	77.260	Poecilia_reticulata
ENSDARG00000007430	prdm12b	100	81.794	ENSPREG00000015073	prdm12b	99	82.058	Poecilia_reticulata
ENSDARG00000007430	prdm12b	90	87.538	ENSPPYG00000019694	PRDM12	92	87.538	Pongo_abelii
ENSDARG00000007430	prdm12b	93	86.257	ENSPCOG00000022255	PRDM12	99	81.217	Propithecus_coquereli
ENSDARG00000007430	prdm12b	93	86.257	ENSPVAG00000001511	PRDM12	99	81.818	Pteropus_vampyrus
ENSDARG00000007430	prdm12b	100	78.030	ENSPNYG00000013589	-	100	79.798	Pundamilia_nyererei
ENSDARG00000007430	prdm12b	100	83.069	ENSPNYG00000009607	prdm12b	100	83.069	Pundamilia_nyererei
ENSDARG00000007430	prdm12b	100	79.521	ENSPNAG00000013396	PRDM12	100	79.521	Pygocentrus_nattereri
ENSDARG00000007430	prdm12b	100	91.576	ENSPNAG00000024532	prdm12b	100	92.663	Pygocentrus_nattereri
ENSDARG00000007430	prdm12b	93	86.257	ENSRNOG00000009218	Prdm12	99	82.038	Rattus_norvegicus
ENSDARG00000007430	prdm12b	88	87.227	ENSRBIG00000042712	PRDM12	98	80.833	Rhinopithecus_bieti
ENSDARG00000007430	prdm12b	89	87.385	ENSRROG00000043554	PRDM12	99	87.385	Rhinopithecus_roxellana
ENSDARG00000007430	prdm12b	100	85.326	ENSSHAG00000015972	PRDM12	99	85.326	Sarcophilus_harrisii
ENSDARG00000007430	prdm12b	100	79.692	ENSSMAG00000003754	prdm12b	100	80.256	Scophthalmus_maximus
ENSDARG00000007430	prdm12b	100	81.201	ENSSDUG00000019071	-	100	82.507	Seriola_dumerili
ENSDARG00000007430	prdm12b	100	81.558	ENSSDUG00000023498	prdm12b	100	81.818	Seriola_dumerili
ENSDARG00000007430	prdm12b	100	82.199	ENSSLDG00000009557	prdm12b	100	82.199	Seriola_lalandi_dorsalis
ENSDARG00000007430	prdm12b	100	81.199	ENSSLDG00000013562	-	100	81.199	Seriola_lalandi_dorsalis
ENSDARG00000007430	prdm12b	100	86.339	ENSSPUG00000013424	PRDM12	99	86.339	Sphenodon_punctatus
ENSDARG00000007430	prdm12b	100	72.351	ENSSPAG00000022420	-	100	74.935	Stegastes_partitus
ENSDARG00000007430	prdm12b	100	81.102	ENSSPAG00000018824	prdm12b	100	81.627	Stegastes_partitus
ENSDARG00000007430	prdm12b	93	86.257	ENSSSCG00000005703	PRDM12	99	81.383	Sus_scrofa
ENSDARG00000007430	prdm12b	100	80.541	ENSTRUG00000013239	-	100	80.541	Takifugu_rubripes
ENSDARG00000007430	prdm12b	100	83.333	ENSTRUG00000018659	prdm12b	100	84.054	Takifugu_rubripes
ENSDARG00000007430	prdm12b	100	82.527	ENSTNIG00000009020	prdm12b	99	83.065	Tetraodon_nigroviridis
ENSDARG00000007430	prdm12b	100	77.568	ENSTNIG00000005859	-	99	77.568	Tetraodon_nigroviridis
ENSDARG00000007430	prdm12b	93	86.257	ENSUAMG00000009653	PRDM12	93	86.297	Ursus_americanus
ENSDARG00000007430	prdm12b	90	88.146	ENSVVUG00000027662	PRDM12	77	88.146	Vulpes_vulpes
ENSDARG00000007430	prdm12b	100	82.574	ENSXCOG00000002836	prdm12b	99	82.842	Xiphophorus_couchianus
ENSDARG00000007430	prdm12b	100	78.608	ENSXMAG00000028012	-	100	80.412	Xiphophorus_maculatus
ENSDARG00000007430	prdm12b	100	81.333	ENSXMAG00000005537	prdm12b	100	81.600	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0002244	hematopoietic progenitor cell differentiation	24240475.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0021521	ventral spinal cord interneuron specification	24631215.	IMP	Process
GO:0022008	neurogenesis	21873635.	IBA	Process
GO:0031490	chromatin DNA binding	21873635.	IBA	Function
GO:0032259	methylation	-	IEA	Process
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0051574	positive regulation of histone H3-K9 methylation	21873635.	IBA	Process
GO:0060319	primitive erythrocyte differentiation	24240475.	IMP	Process
GO:1900111	positive regulation of histone H3-K9 dimethylation	-	IEA	Process
GO:1990226	histone methyltransferase binding	21873635.	IBA	Function