EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000007465 (Gene tree)
Gene ID: 553522
Gene Symbol: tdrd1
Alias: im:7155161
Full Name: tudor domain containing 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 15465 bases
Position: chr12:30344076-30359540
Accession: ZDB-GENE-070803-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000148308	TUDOR	PF00567.24	6.5e-111	1	4
ENSDARP00000148308	TUDOR	PF00567.24	6.5e-111	2	4
ENSDARP00000148308	TUDOR	PF00567.24	6.5e-111	3	4
ENSDARP00000148308	TUDOR	PF00567.24	6.5e-111	4	4
ENSDARP00000127267	TUDOR	PF00567.24	7.4e-111	1	4
ENSDARP00000127267	TUDOR	PF00567.24	7.4e-111	2	4
ENSDARP00000127267	TUDOR	PF00567.24	7.4e-111	3	4
ENSDARP00000127267	TUDOR	PF00567.24	7.4e-111	4	4
ENSDARP00000150322	TUDOR	PF00567.24	7.4e-111	1	4
ENSDARP00000150322	TUDOR	PF00567.24	7.4e-111	2	4
ENSDARP00000150322	TUDOR	PF00567.24	7.4e-111	3	4
ENSDARP00000150322	TUDOR	PF00567.24	7.4e-111	4	4
ENSDARP00000127267	SMN	PF06003.12	4.5e-18	1	1
ENSDARP00000150322	SMN	PF06003.12	4.5e-18	1	1
ENSDARP00000148308	SMN	PF06003.12	4.8e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000152981	-	4166	XM_021480109	ENSDARP00000127267	1176 (aa)	XP_021335784	F1Q7S6
ENSDART00000189988	-	5887	-	ENSDARP00000148308	1149 (aa)	-	A0A2R8QA40
ENSDART00000192628	-	6096	-	ENSDARP00000150322	1176 (aa)	-	F1Q7S6
ENSDART00000152878	-	714	-	ENSDARP00000127225	226 (aa)	-	U3JAF7

Gene Model

Click here to download ENSDARG00000007465's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000007465's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000007465	tdrd1	89	37.809	ENSG00000095627	TDRD1	81	38.361	Homo_sapiens
ENSDARG00000007465	tdrd1	90	45.531	ENSAPOG00000023199	tdrd1	92	45.953	Acanthochromis_polyacanthus
ENSDARG00000007465	tdrd1	80	36.335	ENSAMEG00000015182	TDRD1	82	36.335	Ailuropoda_melanoleuca
ENSDARG00000007465	tdrd1	94	45.308	ENSACIG00000010576	tdrd1	95	45.308	Amphilophus_citrinellus
ENSDARG00000007465	tdrd1	99	48.142	ENSAOCG00000007059	tdrd1	99	42.448	Amphiprion_ocellaris
ENSDARG00000007465	tdrd1	90	46.435	ENSAPEG00000017049	tdrd1	90	46.435	Amphiprion_percula
ENSDARG00000007465	tdrd1	90	46.312	ENSATEG00000021627	tdrd1	91	46.485	Anabas_testudineus
ENSDARG00000007465	tdrd1	88	34.679	ENSAPLG00000012609	TDRD1	91	33.868	Anas_platyrhynchos
ENSDARG00000007465	tdrd1	84	33.742	ENSACAG00000009854	TDRD1	77	33.742	Anolis_carolinensis
ENSDARG00000007465	tdrd1	89	37.164	ENSANAG00000035710	TDRD1	81	37.164	Aotus_nancymaae
ENSDARG00000007465	tdrd1	99	43.833	ENSACLG00000014107	tdrd1	98	43.833	Astatotilapia_calliptera
ENSDARG00000007465	tdrd1	99	59.380	ENSAMXG00000015146	tdrd1	99	59.380	Astyanax_mexicanus
ENSDARG00000007465	tdrd1	84	34.865	ENSBTAG00000006855	TDRD1	82	34.865	Bos_taurus
ENSDARG00000007465	tdrd1	89	36.989	ENSCJAG00000019270	TDRD1	80	37.542	Callithrix_jacchus
ENSDARG00000007465	tdrd1	86	33.333	ENSCAFG00000011266	TDRD1	86	33.885	Canis_familiaris
ENSDARG00000007465	tdrd1	86	33.333	ENSCAFG00020012373	TDRD1	85	33.885	Canis_lupus_dingo
ENSDARG00000007465	tdrd1	84	35.005	ENSCHIG00000012766	TDRD1	82	35.005	Capra_hircus
ENSDARG00000007465	tdrd1	89	36.538	ENSTSYG00000004935	TDRD1	80	36.538	Carlito_syrichta
ENSDARG00000007465	tdrd1	89	33.803	ENSCPOG00000004190	TDRD1	81	34.633	Cavia_porcellus
ENSDARG00000007465	tdrd1	89	37.164	ENSCCAG00000027375	TDRD1	81	37.610	Cebus_capucinus
ENSDARG00000007465	tdrd1	89	37.339	ENSCATG00000035999	TDRD1	83	37.788	Cercocebus_atys
ENSDARG00000007465	tdrd1	89	35.922	ENSCLAG00000003935	TDRD1	81	36.807	Chinchilla_lanigera
ENSDARG00000007465	tdrd1	89	37.661	ENSCSAG00000005071	TDRD1	81	38.116	Chlorocebus_sabaeus
ENSDARG00000007465	tdrd1	79	36.424	ENSCHOG00000001690	TDRD1	74	36.424	Choloepus_hoffmanni
ENSDARG00000007465	tdrd1	85	37.406	ENSCPBG00000003780	TDRD1	81	37.788	Chrysemys_picta_bellii
ENSDARG00000007465	tdrd1	89	37.446	ENSCANG00000035172	TDRD1	81	37.788	Colobus_angolensis_palliatus
ENSDARG00000007465	tdrd1	89	34.937	ENSCGRG00001004632	Tdrd1	84	35.446	Cricetulus_griseus_chok1gshd
ENSDARG00000007465	tdrd1	80	35.957	ENSCGRG00000004981	Tdrd1	81	35.957	Cricetulus_griseus_crigri
ENSDARG00000007465	tdrd1	90	41.033	ENSCSEG00000006983	tdrd1	98	40.452	Cynoglossus_semilaevis
ENSDARG00000007465	tdrd1	82	44.318	ENSCVAG00000020980	tdrd1	92	44.503	Cyprinodon_variegatus
ENSDARG00000007465	tdrd1	89	35.974	ENSDNOG00000012114	TDRD1	78	36.214	Dasypus_novemcinctus
ENSDARG00000007465	tdrd1	82	35.312	ENSDORG00000009986	Tdrd1	81	35.312	Dipodomys_ordii
ENSDARG00000007465	tdrd1	88	33.333	ENSETEG00000020143	TDRD1	80	33.333	Echinops_telfairi
ENSDARG00000007465	tdrd1	80	34.216	ENSEASG00005014802	TDRD1	80	34.725	Equus_asinus_asinus
ENSDARG00000007465	tdrd1	88	35.450	ENSECAG00000009748	TDRD1	78	35.450	Equus_caballus
ENSDARG00000007465	tdrd1	85	33.236	ENSEEUG00000010076	TDRD1	84	33.236	Erinaceus_europaeus
ENSDARG00000007465	tdrd1	99	50.454	ENSELUG00000024364	tdrd1	99	50.454	Esox_lucius
ENSDARG00000007465	tdrd1	89	36.538	ENSFCAG00000000632	TDRD1	81	36.478	Felis_catus
ENSDARG00000007465	tdrd1	74	35.123	ENSFALG00000002237	TDRD1	86	35.975	Ficedula_albicollis
ENSDARG00000007465	tdrd1	89	36.988	ENSFDAG00000013225	TDRD1	82	36.988	Fukomys_damarensis
ENSDARG00000007465	tdrd1	92	39.657	ENSFHEG00000009203	tdrd1	99	39.657	Fundulus_heteroclitus
ENSDARG00000007465	tdrd1	75	44.340	ENSGMOG00000016797	-	68	44.340	Gadus_morhua
ENSDARG00000007465	tdrd1	87	33.019	ENSGALG00000046180	TDRD1	87	33.019	Gallus_gallus
ENSDARG00000007465	tdrd1	99	41.408	ENSGAFG00000002668	tdrd1	99	41.408	Gambusia_affinis
ENSDARG00000007465	tdrd1	73	48.470	ENSGACG00000006590	tdrd1	100	48.470	Gasterosteus_aculeatus
ENSDARG00000007465	tdrd1	89	37.554	ENSGGOG00000004250	TDRD1	81	37.554	Gorilla_gorilla
ENSDARG00000007465	tdrd1	99	44.287	ENSHBUG00000005216	tdrd1	97	44.287	Haplochromis_burtoni
ENSDARG00000007465	tdrd1	88	34.361	ENSHGLG00000010877	TDRD1	78	34.361	Heterocephalus_glaber_female
ENSDARG00000007465	tdrd1	89	35.933	ENSHGLG00100013857	TDRD1	85	36.609	Heterocephalus_glaber_male
ENSDARG00000007465	tdrd1	99	38.791	ENSHCOG00000002840	tdrd1	99	39.147	Hippocampus_comes
ENSDARG00000007465	tdrd1	99	57.904	ENSIPUG00000017232	tdrd1	99	57.904	Ictalurus_punctatus
ENSDARG00000007465	tdrd1	89	36.598	ENSSTOG00000003221	TDRD1	81	37.500	Ictidomys_tridecemlineatus
ENSDARG00000007465	tdrd1	89	36.090	ENSJJAG00000014720	Tdrd1	81	36.494	Jaculus_jaculus
ENSDARG00000007465	tdrd1	89	46.103	ENSKMAG00000018558	tdrd1	97	46.103	Kryptolebias_marmoratus
ENSDARG00000007465	tdrd1	99	44.896	ENSLBEG00000004161	tdrd1	97	45.132	Labrus_bergylta
ENSDARG00000007465	tdrd1	87	37.595	ENSLACG00000011559	TDRD1	85	37.310	Latimeria_chalumnae
ENSDARG00000007465	tdrd1	99	42.096	ENSLOCG00000012030	tdrd1	100	46.992	Lepisosteus_oculatus
ENSDARG00000007465	tdrd1	84	35.431	ENSLAFG00000011575	TDRD1	93	35.431	Loxodonta_africana
ENSDARG00000007465	tdrd1	89	37.446	ENSMFAG00000043487	TDRD1	81	37.897	Macaca_fascicularis
ENSDARG00000007465	tdrd1	89	37.446	ENSMMUG00000022517	TDRD1	81	37.897	Macaca_mulatta
ENSDARG00000007465	tdrd1	89	37.339	ENSMNEG00000031108	TDRD1	81	37.788	Macaca_nemestrina
ENSDARG00000007465	tdrd1	89	37.339	ENSMLEG00000032281	TDRD1	81	37.897	Mandrillus_leucophaeus
ENSDARG00000007465	tdrd1	90	47.290	ENSMAMG00000015287	tdrd1	93	47.290	Mastacembelus_armatus
ENSDARG00000007465	tdrd1	99	44.417	ENSMZEG00005025315	tdrd1	98	44.417	Maylandia_zebra
ENSDARG00000007465	tdrd1	90	31.968	ENSMGAG00000011067	TDRD1	97	34.879	Meleagris_gallopavo
ENSDARG00000007465	tdrd1	81	36.504	ENSMAUG00000012164	Tdrd1	78	37.241	Mesocricetus_auratus
ENSDARG00000007465	tdrd1	89	36.120	ENSMICG00000016190	TDRD1	82	36.120	Microcebus_murinus
ENSDARG00000007465	tdrd1	81	37.348	ENSMOCG00000022360	Tdrd1	82	37.459	Microtus_ochrogaster
ENSDARG00000007465	tdrd1	90	46.884	ENSMMOG00000014068	tdrd1	91	46.982	Mola_mola
ENSDARG00000007465	tdrd1	83	34.879	ENSMODG00000009788	TDRD1	82	35.397	Monodelphis_domestica
ENSDARG00000007465	tdrd1	99	43.946	ENSMALG00000022115	tdrd1	98	43.946	Monopterus_albus
ENSDARG00000007465	tdrd1	81	36.475	MGP_CAROLIEiJ_G0023095	Tdrd1	85	36.585	Mus_caroli
ENSDARG00000007465	tdrd1	81	36.714	ENSMUSG00000025081	Tdrd1	83	36.825	Mus_musculus
ENSDARG00000007465	tdrd1	89	36.854	MGP_PahariEiJ_G0014583	Tdrd1	87	42.308	Mus_pahari
ENSDARG00000007465	tdrd1	78	36.159	MGP_SPRETEiJ_G0024016	Tdrd1	76	36.714	Mus_spretus
ENSDARG00000007465	tdrd1	76	35.866	ENSMPUG00000001987	TDRD1	77	35.866	Mustela_putorius_furo
ENSDARG00000007465	tdrd1	80	35.300	ENSNGAG00000015231	Tdrd1	79	35.300	Nannospalax_galili
ENSDARG00000007465	tdrd1	96	44.900	ENSNBRG00000017920	tdrd1	96	44.900	Neolamprologus_brichardi
ENSDARG00000007465	tdrd1	84	37.556	ENSNLEG00000016228	TDRD1	83	35.806	Nomascus_leucogenys
ENSDARG00000007465	tdrd1	83	33.829	ENSMEUG00000007717	TDRD1	81	34.047	Notamacropus_eugenii
ENSDARG00000007465	tdrd1	89	34.122	ENSOPRG00000009180	TDRD1	82	34.573	Ochotona_princeps
ENSDARG00000007465	tdrd1	89	35.622	ENSODEG00000011965	TDRD1	82	36.464	Octodon_degus
ENSDARG00000007465	tdrd1	99	44.661	ENSONIG00000016382	tdrd1	99	44.661	Oreochromis_niloticus
ENSDARG00000007465	tdrd1	83	34.865	ENSOANG00000001562	TDRD1	84	35.234	Ornithorhynchus_anatinus
ENSDARG00000007465	tdrd1	84	36.217	ENSOCUG00000025327	TDRD1	84	36.217	Oryctolagus_cuniculus
ENSDARG00000007465	tdrd1	99	42.604	ENSORLG00000004833	tdrd1	99	42.604	Oryzias_latipes
ENSDARG00000007465	tdrd1	99	42.736	ENSORLG00020019231	tdrd1	99	42.736	Oryzias_latipes_hni
ENSDARG00000007465	tdrd1	99	42.591	ENSORLG00015017184	tdrd1	99	42.591	Oryzias_latipes_hsok
ENSDARG00000007465	tdrd1	99	42.965	ENSOMEG00000023637	tdrd1	98	42.355	Oryzias_melastigma
ENSDARG00000007465	tdrd1	89	36.898	ENSOGAG00000001370	TDRD1	82	36.898	Otolemur_garnettii
ENSDARG00000007465	tdrd1	84	35.130	ENSOARG00000014200	-	81	35.130	Ovis_aries
ENSDARG00000007465	tdrd1	89	37.661	ENSPPAG00000041621	TDRD1	81	37.661	Pan_paniscus
ENSDARG00000007465	tdrd1	89	36.364	ENSPPRG00000000191	TDRD1	81	36.306	Panthera_pardus
ENSDARG00000007465	tdrd1	89	36.462	ENSPTIG00000010264	TDRD1	80	37.238	Panthera_tigris_altaica
ENSDARG00000007465	tdrd1	89	37.661	ENSPTRG00000002958	TDRD1	81	37.661	Pan_troglodytes
ENSDARG00000007465	tdrd1	89	37.232	ENSPANG00000020752	TDRD1	83	37.678	Papio_anubis
ENSDARG00000007465	tdrd1	93	46.642	ENSPKIG00000010586	tdrd1	92	46.642	Paramormyrops_kingsleyae
ENSDARG00000007465	tdrd1	87	36.117	ENSPSIG00000014655	TDRD1	80	36.117	Pelodiscus_sinensis
ENSDARG00000007465	tdrd1	81	43.261	ENSPMGG00000018890	tdrd1	99	43.261	Periophthalmus_magnuspinnatus
ENSDARG00000007465	tdrd1	89	35.685	ENSPEMG00000004582	Tdrd1	83	36.499	Peromyscus_maniculatus_bairdii
ENSDARG00000007465	tdrd1	68	31.429	ENSPMAG00000004416	-	100	31.688	Petromyzon_marinus
ENSDARG00000007465	tdrd1	89	34.641	ENSPCIG00000009739	TDRD1	85	34.641	Phascolarctos_cinereus
ENSDARG00000007465	tdrd1	91	43.268	ENSPFOG00000002145	tdrd1	99	43.268	Poecilia_formosa
ENSDARG00000007465	tdrd1	99	42.061	ENSPLAG00000010241	tdrd1	99	42.061	Poecilia_latipinna
ENSDARG00000007465	tdrd1	99	41.695	ENSPMEG00000021893	tdrd1	99	41.695	Poecilia_mexicana
ENSDARG00000007465	tdrd1	99	42.024	ENSPREG00000022663	tdrd1	99	41.927	Poecilia_reticulata
ENSDARG00000007465	tdrd1	89	35.768	ENSPPYG00000002671	TDRD1	80	35.768	Pongo_abelii
ENSDARG00000007465	tdrd1	91	34.386	ENSPCAG00000006692	TDRD1	70	34.386	Procavia_capensis
ENSDARG00000007465	tdrd1	83	36.052	ENSPCOG00000026619	TDRD1	80	36.404	Propithecus_coquereli
ENSDARG00000007465	tdrd1	83	33.470	ENSPVAG00000003055	TDRD1	81	33.470	Pteropus_vampyrus
ENSDARG00000007465	tdrd1	99	43.797	ENSPNYG00000001706	tdrd1	98	43.797	Pundamilia_nyererei
ENSDARG00000007465	tdrd1	99	59.932	ENSPNAG00000005831	tdrd1	97	59.932	Pygocentrus_nattereri
ENSDARG00000007465	tdrd1	89	36.276	ENSRNOG00000017064	Tdrd1	85	36.964	Rattus_norvegicus
ENSDARG00000007465	tdrd1	89	37.017	ENSRBIG00000029668	TDRD1	83	37.459	Rhinopithecus_bieti
ENSDARG00000007465	tdrd1	89	37.124	ENSRROG00000043379	TDRD1	81	37.568	Rhinopithecus_roxellana
ENSDARG00000007465	tdrd1	89	37.594	ENSSBOG00000023561	TDRD1	80	38.048	Saimiri_boliviensis_boliviensis
ENSDARG00000007465	tdrd1	85	35.433	ENSSHAG00000014311	TDRD1	83	35.433	Sarcophilus_harrisii
ENSDARG00000007465	tdrd1	83	46.399	ENSSFOG00015022020	tdrd1	92	46.399	Scleropages_formosus
ENSDARG00000007465	tdrd1	92	45.845	ENSSMAG00000019271	tdrd1	93	45.845	Scophthalmus_maximus
ENSDARG00000007465	tdrd1	90	49.067	ENSSDUG00000022012	tdrd1	94	49.067	Seriola_dumerili
ENSDARG00000007465	tdrd1	90	48.363	ENSSLDG00000006423	tdrd1	95	48.363	Seriola_lalandi_dorsalis
ENSDARG00000007465	tdrd1	86	33.742	ENSSARG00000008828	TDRD1	68	34.529	Sorex_araneus
ENSDARG00000007465	tdrd1	86	32.729	ENSSPUG00000005015	TDRD1	83	33.506	Sphenodon_punctatus
ENSDARG00000007465	tdrd1	99	43.243	ENSSPAG00000018805	tdrd1	99	43.243	Stegastes_partitus
ENSDARG00000007465	tdrd1	80	36.926	ENSSSCG00000021075	TDRD1	81	36.926	Sus_scrofa
ENSDARG00000007465	tdrd1	76	36.926	ENSTGUG00000010905	TDRD1	92	37.084	Taeniopygia_guttata
ENSDARG00000007465	tdrd1	86	45.455	ENSTRUG00000012142	tdrd1	99	43.948	Takifugu_rubripes
ENSDARG00000007465	tdrd1	77	39.174	ENSTNIG00000018898	tdrd1	100	39.038	Tetraodon_nigroviridis
ENSDARG00000007465	tdrd1	82	38.655	ENSTBEG00000014417	-	76	37.931	Tupaia_belangeri
ENSDARG00000007465	tdrd1	83	36.134	ENSTTRG00000010147	TDRD1	80	36.134	Tursiops_truncatus
ENSDARG00000007465	tdrd1	91	35.706	ENSUAMG00000009025	TDRD1	81	34.911	Ursus_americanus
ENSDARG00000007465	tdrd1	91	36.354	ENSUMAG00000000705	TDRD1	82	35.528	Ursus_maritimus
ENSDARG00000007465	tdrd1	86	34.808	ENSVPAG00000004000	TDRD1	85	34.808	Vicugna_pacos
ENSDARG00000007465	tdrd1	86	33.461	ENSVVUG00000009750	TDRD1	86	34.018	Vulpes_vulpes
ENSDARG00000007465	tdrd1	74	46.366	ENSXCOG00000006412	tdrd1	94	46.231	Xiphophorus_couchianus
ENSDARG00000007465	tdrd1	83	46.201	ENSXMAG00000008104	tdrd1	92	44.381	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	21743441.	IPI	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0007275	multicellular organism development	-	IEA	Process
GO:0007281	germ cell development	-	ISS	Process
GO:0007283	spermatogenesis	-	ISS	Process
GO:0030154	cell differentiation	-	IEA	Process
GO:0030719	P granule organization	21743441.	IMP	Process
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0031047	gene silencing by RNA	-	ISS	Process
GO:0034584	piRNA binding	21743441.	IDA	Function
GO:0034587	piRNA metabolic process	-	ISS	Process
GO:0043046	DNA methylation involved in gamete generation	-	ISS	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051321	meiotic cell cycle	-	IEA	Process
GO:0071546	pi-body	-	ISS	Component