EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000007639 (Gene tree)
Gene ID: 394144
Gene Symbol: cnot4b
Alias: zgc:63566
Full Name: CCR4-NOT transcription complex%2C subunit 4b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 42370 bases
Position: chr4:12243698-12286067
Accession: ZDB-GENE-040426-1164
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000016859	RRM_1	PF00076.22	2.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000145032	-	808	-	-	- (aa)	-	-
ENSDART00000022646	-	4317	-	ENSDARP00000016859	798 (aa)	-	Q1L8F5

Gene Model

Click here to download ENSDARG00000007639's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000007639's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000007639	cnot4b	100	73.710	ENSDARG00000007045	cnot4a	100	74.265

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000007639	cnot4b	100	66.584	ENSG00000080802	CNOT4	97	73.975	Homo_sapiens
ENSDARG00000007639	cnot4b	94	74.227	ENSAPOG00000016272	cnot4a	98	92.251	Acanthochromis_polyacanthus
ENSDARG00000007639	cnot4b	94	67.493	ENSAMEG00000012081	CNOT4	100	66.711	Ailuropoda_melanoleuca
ENSDARG00000007639	cnot4b	100	73.195	ENSACIG00000003011	cnot4a	100	73.317	Amphilophus_citrinellus
ENSDARG00000007639	cnot4b	85	92.251	ENSAOCG00000010792	cnot4a	100	89.964	Amphiprion_ocellaris
ENSDARG00000007639	cnot4b	85	92.251	ENSAPEG00000004680	cnot4a	100	89.964	Amphiprion_percula
ENSDARG00000007639	cnot4b	100	73.415	ENSATEG00000017580	cnot4a	99	89.606	Anabas_testudineus
ENSDARG00000007639	cnot4b	100	71.287	ENSAPLG00000016441	CNOT4	100	71.287	Anas_platyrhynchos
ENSDARG00000007639	cnot4b	100	70.443	ENSACAG00000011154	CNOT4	100	70.443	Anolis_carolinensis
ENSDARG00000007639	cnot4b	100	66.296	ENSANAG00000032156	CNOT4	97	73.770	Aotus_nancymaae
ENSDARG00000007639	cnot4b	92	92.251	ENSACLG00000002514	cnot4a	100	92.251	Astatotilapia_calliptera
ENSDARG00000007639	cnot4b	96	94.624	ENSAMXG00000011473	cnot4b	100	94.624	Astyanax_mexicanus
ENSDARG00000007639	cnot4b	86	92.086	ENSAMXG00000001373	cnot4a	100	92.086	Astyanax_mexicanus
ENSDARG00000007639	cnot4b	100	66.091	ENSBTAG00000017919	CNOT4	100	68.519	Bos_taurus
ENSDARG00000007639	cnot4b	100	66.296	ENSCJAG00000012532	CNOT4	97	73.770	Callithrix_jacchus
ENSDARG00000007639	cnot4b	100	66.296	ENSCAFG00000003223	CNOT4	100	67.290	Canis_familiaris
ENSDARG00000007639	cnot4b	94	65.402	ENSCAFG00020000093	CNOT4	100	67.290	Canis_lupus_dingo
ENSDARG00000007639	cnot4b	100	66.091	ENSCHIG00000010955	CNOT4	100	67.593	Capra_hircus
ENSDARG00000007639	cnot4b	100	66.173	ENSTSYG00000000893	CNOT4	99	72.892	Carlito_syrichta
ENSDARG00000007639	cnot4b	92	92.251	ENSCAPG00000006213	CNOT4	99	93.585	Cavia_aperea
ENSDARG00000007639	cnot4b	92	92.620	ENSCPOG00000011526	CNOT4	99	93.962	Cavia_porcellus
ENSDARG00000007639	cnot4b	100	65.884	ENSCCAG00000024414	CNOT4	94	96.070	Cebus_capucinus
ENSDARG00000007639	cnot4b	100	66.335	ENSCATG00000022607	CNOT4	97	73.770	Cercocebus_atys
ENSDARG00000007639	cnot4b	92	92.620	ENSCLAG00000001857	CNOT4	100	92.620	Chinchilla_lanigera
ENSDARG00000007639	cnot4b	100	66.584	ENSCSAG00000009096	CNOT4	100	67.160	Chlorocebus_sabaeus
ENSDARG00000007639	cnot4b	62	96.257	ENSCHOG00000010412	CNOT4	65	96.257	Choloepus_hoffmanni
ENSDARG00000007639	cnot4b	91	94.340	ENSCPBG00000004959	CNOT4	99	94.340	Chrysemys_picta_bellii
ENSDARG00000007639	cnot4b	100	66.335	ENSCANG00000029319	CNOT4	97	73.770	Colobus_angolensis_palliatus
ENSDARG00000007639	cnot4b	100	66.377	ENSCGRG00001014651	Cnot4	100	67.290	Cricetulus_griseus_chok1gshd
ENSDARG00000007639	cnot4b	100	66.377	ENSCGRG00000005727	Cnot4	100	67.290	Cricetulus_griseus_crigri
ENSDARG00000007639	cnot4b	86	92.251	ENSCSEG00000015080	cnot4a	94	92.251	Cynoglossus_semilaevis
ENSDARG00000007639	cnot4b	86	89.606	ENSCVAG00000009399	cnot4a	100	89.606	Cyprinodon_variegatus
ENSDARG00000007639	cnot4b	100	66.378	ENSDNOG00000009409	CNOT4	100	67.367	Dasypus_novemcinctus
ENSDARG00000007639	cnot4b	100	67.329	ENSDORG00000012268	Cnot4	100	68.224	Dipodomys_ordii
ENSDARG00000007639	cnot4b	97	65.637	ENSETEG00000013407	CNOT4	91	65.637	Echinops_telfairi
ENSDARG00000007639	cnot4b	100	67.564	ENSEASG00005014430	CNOT4	100	69.159	Equus_asinus_asinus
ENSDARG00000007639	cnot4b	100	66.255	ENSECAG00000020262	CNOT4	100	69.159	Equus_caballus
ENSDARG00000007639	cnot4b	86	90.545	ENSELUG00000008742	cnot4a	100	90.545	Esox_lucius
ENSDARG00000007639	cnot4b	89	89.493	ENSELUG00000011540	cnot4b	98	89.493	Esox_lucius
ENSDARG00000007639	cnot4b	100	66.173	ENSFCAG00000011904	CNOT4	96	73.967	Felis_catus
ENSDARG00000007639	cnot4b	100	71.163	ENSFALG00000011194	CNOT4	100	70.936	Ficedula_albicollis
ENSDARG00000007639	cnot4b	100	66.296	ENSFDAG00000013525	CNOT4	100	69.159	Fukomys_damarensis
ENSDARG00000007639	cnot4b	85	91.852	ENSFHEG00000006608	cnot4a	99	91.852	Fundulus_heteroclitus
ENSDARG00000007639	cnot4b	96	71.125	ENSGMOG00000001329	cnot4a	100	71.536	Gadus_morhua
ENSDARG00000007639	cnot4b	100	71.411	ENSGALG00000011682	CNOT4	100	71.411	Gallus_gallus
ENSDARG00000007639	cnot4b	92	91.513	ENSGACG00000004276	cnot4a	100	91.513	Gasterosteus_aculeatus
ENSDARG00000007639	cnot4b	91	94.340	ENSGAGG00000017331	CNOT4	99	94.340	Gopherus_agassizii
ENSDARG00000007639	cnot4b	97	62.183	ENSGGOG00000000142	CNOT4	97	71.628	Gorilla_gorilla
ENSDARG00000007639	cnot4b	92	92.251	ENSHBUG00000000027	cnot4a	100	92.251	Haplochromis_burtoni
ENSDARG00000007639	cnot4b	100	66.708	ENSHGLG00000011533	CNOT4	100	69.159	Heterocephalus_glaber_female
ENSDARG00000007639	cnot4b	77	67.576	ENSHGLG00100013058	CNOT4	94	67.576	Heterocephalus_glaber_male
ENSDARG00000007639	cnot4b	93	89.247	ENSHCOG00000015815	cnot4a	100	89.247	Hippocampus_comes
ENSDARG00000007639	cnot4b	92	93.358	ENSIPUG00000006393	cnot4	100	72.304	Ictalurus_punctatus
ENSDARG00000007639	cnot4b	90	94.265	ENSIPUG00000016994	cnot4b	100	94.265	Ictalurus_punctatus
ENSDARG00000007639	cnot4b	100	66.296	ENSSTOG00000007717	CNOT4	100	68.224	Ictidomys_tridecemlineatus
ENSDARG00000007639	cnot4b	100	65.760	ENSJJAG00000016618	Cnot4	100	69.159	Jaculus_jaculus
ENSDARG00000007639	cnot4b	70	88.930	ENSJJAG00000019991	-	94	57.097	Jaculus_jaculus
ENSDARG00000007639	cnot4b	93	90.323	ENSKMAG00000004581	cnot4a	100	90.323	Kryptolebias_marmoratus
ENSDARG00000007639	cnot4b	100	73.993	ENSLBEG00000009999	cnot4a	100	74.115	Labrus_bergylta
ENSDARG00000007639	cnot4b	100	71.623	ENSLACG00000002647	CNOT4	99	71.499	Latimeria_chalumnae
ENSDARG00000007639	cnot4b	100	75.862	ENSLOCG00000016126	cnot4a	100	75.862	Lepisosteus_oculatus
ENSDARG00000007639	cnot4b	100	66.133	ENSLAFG00000000709	CNOT4	100	67.118	Loxodonta_africana
ENSDARG00000007639	cnot4b	100	66.584	ENSMFAG00000046349	CNOT4	97	73.770	Macaca_fascicularis
ENSDARG00000007639	cnot4b	100	66.335	ENSMMUG00000016181	CNOT4	97	73.770	Macaca_mulatta
ENSDARG00000007639	cnot4b	100	66.335	ENSMNEG00000042164	CNOT4	97	73.770	Macaca_nemestrina
ENSDARG00000007639	cnot4b	100	66.335	ENSMLEG00000032709	CNOT4	97	73.770	Mandrillus_leucophaeus
ENSDARG00000007639	cnot4b	92	92.222	ENSMAMG00000023194	cnot4a	100	92.222	Mastacembelus_armatus
ENSDARG00000007639	cnot4b	92	86.347	ENSMZEG00005007312	cnot4a	100	86.347	Maylandia_zebra
ENSDARG00000007639	cnot4b	100	71.163	ENSMGAG00000011788	CNOT4	100	71.163	Meleagris_gallopavo
ENSDARG00000007639	cnot4b	100	66.460	ENSMAUG00000020415	Cnot4	100	68.224	Mesocricetus_auratus
ENSDARG00000007639	cnot4b	100	66.296	ENSMICG00000001667	CNOT4	100	73.887	Microcebus_murinus
ENSDARG00000007639	cnot4b	100	66.625	ENSMOCG00000020955	Cnot4	100	67.618	Microtus_ochrogaster
ENSDARG00000007639	cnot4b	77	91.513	ENSMMOG00000014565	cnot4a	95	91.513	Mola_mola
ENSDARG00000007639	cnot4b	100	67.494	ENSMODG00000014068	CNOT4	100	67.078	Monodelphis_domestica
ENSDARG00000007639	cnot4b	94	74.278	ENSMALG00000011662	cnot4a	88	74.409	Monopterus_albus
ENSDARG00000007639	cnot4b	100	66.089	MGP_CAROLIEiJ_G0028217	Cnot4	100	66.667	Mus_caroli
ENSDARG00000007639	cnot4b	100	66.253	ENSMUSG00000038784	Cnot4	100	66.831	Mus_musculus
ENSDARG00000007639	cnot4b	100	66.129	MGP_PahariEiJ_G0021974	Cnot4	100	66.708	Mus_pahari
ENSDARG00000007639	cnot4b	100	66.253	MGP_SPRETEiJ_G0029216	Cnot4	100	66.831	Mus_spretus
ENSDARG00000007639	cnot4b	100	66.296	ENSMPUG00000004089	CNOT4	100	66.871	Mustela_putorius_furo
ENSDARG00000007639	cnot4b	94	68.224	ENSMLUG00000008260	CNOT4	100	68.224	Myotis_lucifugus
ENSDARG00000007639	cnot4b	100	66.832	ENSNGAG00000015030	Cnot4	100	68.224	Nannospalax_galili
ENSDARG00000007639	cnot4b	86	83.871	ENSNBRG00000021144	cnot4a	100	83.871	Neolamprologus_brichardi
ENSDARG00000007639	cnot4b	100	66.169	ENSNLEG00000013352	CNOT4	97	73.975	Nomascus_leucogenys
ENSDARG00000007639	cnot4b	79	68.831	ENSOPRG00000001023	CNOT4	82	68.831	Ochotona_princeps
ENSDARG00000007639	cnot4b	92	92.620	ENSODEG00000012975	CNOT4	99	93.962	Octodon_degus
ENSDARG00000007639	cnot4b	100	73.659	ENSONIG00000008656	cnot4a	100	73.203	Oreochromis_niloticus
ENSDARG00000007639	cnot4b	100	67.574	ENSOANG00000005006	CNOT4	100	67.159	Ornithorhynchus_anatinus
ENSDARG00000007639	cnot4b	100	66.543	ENSOCUG00000013448	CNOT4	100	66.994	Oryctolagus_cuniculus
ENSDARG00000007639	cnot4b	83	89.606	ENSORLG00000003727	cnot4a	99	89.606	Oryzias_latipes
ENSDARG00000007639	cnot4b	83	89.964	ENSORLG00020015684	cnot4a	100	72.917	Oryzias_latipes_hni
ENSDARG00000007639	cnot4b	83	89.964	ENSORLG00015008470	cnot4a	100	72.351	Oryzias_latipes_hsok
ENSDARG00000007639	cnot4b	82	91.209	ENSOMEG00000011084	cnot4a	100	72.594	Oryzias_melastigma
ENSDARG00000007639	cnot4b	100	66.049	ENSOGAG00000015499	CNOT4	100	66.748	Otolemur_garnettii
ENSDARG00000007639	cnot4b	100	65.926	ENSOARG00000008803	CNOT4	100	66.503	Ovis_aries
ENSDARG00000007639	cnot4b	100	66.335	ENSPPAG00000041937	CNOT4	97	73.975	Pan_paniscus
ENSDARG00000007639	cnot4b	100	66.049	ENSPPRG00000023940	CNOT4	100	67.290	Panthera_pardus
ENSDARG00000007639	cnot4b	100	66.049	ENSPTIG00000016601	CNOT4	96	73.967	Panthera_tigris_altaica
ENSDARG00000007639	cnot4b	100	66.087	ENSPTRG00000019727	CNOT4	97	73.770	Pan_troglodytes
ENSDARG00000007639	cnot4b	100	66.335	ENSPANG00000017724	CNOT4	97	73.770	Papio_anubis
ENSDARG00000007639	cnot4b	100	69.678	ENSPKIG00000018137	cnot4a	100	70.050	Paramormyrops_kingsleyae
ENSDARG00000007639	cnot4b	100	71.481	ENSPSIG00000011256	CNOT4	100	71.043	Pelodiscus_sinensis
ENSDARG00000007639	cnot4b	86	88.889	ENSPMGG00000005671	cnot4a	100	88.889	Periophthalmus_magnuspinnatus
ENSDARG00000007639	cnot4b	100	66.087	ENSPEMG00000021566	Cnot4	100	67.290	Peromyscus_maniculatus_bairdii
ENSDARG00000007639	cnot4b	100	67.453	ENSPCIG00000029622	CNOT4	96	67.037	Phascolarctos_cinereus
ENSDARG00000007639	cnot4b	100	71.879	ENSPFOG00000002228	cnot4a	100	72.000	Poecilia_formosa
ENSDARG00000007639	cnot4b	93	89.964	ENSPLAG00000001780	cnot4a	100	89.964	Poecilia_latipinna
ENSDARG00000007639	cnot4b	93	89.964	ENSPMEG00000006852	cnot4a	100	89.964	Poecilia_mexicana
ENSDARG00000007639	cnot4b	91	90.370	ENSPREG00000008171	cnot4a	99	90.370	Poecilia_reticulata
ENSDARG00000007639	cnot4b	100	66.584	ENSPPYG00000018026	CNOT4	100	67.160	Pongo_abelii
ENSDARG00000007639	cnot4b	100	66.049	ENSPCOG00000019907	CNOT4	100	73.887	Propithecus_coquereli
ENSDARG00000007639	cnot4b	94	65.796	ENSPVAG00000004905	CNOT4	90	65.025	Pteropus_vampyrus
ENSDARG00000007639	cnot4b	100	73.659	ENSPNYG00000004276	cnot4a	100	84.229	Pundamilia_nyererei
ENSDARG00000007639	cnot4b	93	91.756	ENSPNAG00000020433	cnot4a	100	91.756	Pygocentrus_nattereri
ENSDARG00000007639	cnot4b	96	95.341	ENSPNAG00000008679	cnot4b	100	95.341	Pygocentrus_nattereri
ENSDARG00000007639	cnot4b	100	65.802	ENSRNOG00000010795	Cnot4	100	66.380	Rattus_norvegicus
ENSDARG00000007639	cnot4b	100	66.335	ENSRBIG00000043977	CNOT4	97	73.770	Rhinopithecus_bieti
ENSDARG00000007639	cnot4b	100	66.173	ENSSBOG00000020808	CNOT4	83	93.962	Saimiri_boliviensis_boliviensis
ENSDARG00000007639	cnot4b	100	67.618	ENSSHAG00000013639	CNOT4	100	67.324	Sarcophilus_harrisii
ENSDARG00000007639	cnot4b	86	92.473	ENSSFOG00015017285	CNOT4	100	92.473	Scleropages_formosus
ENSDARG00000007639	cnot4b	83	93.462	ENSSFOG00015002019	cnot4a	100	90.323	Scleropages_formosus
ENSDARG00000007639	cnot4b	85	92.222	ENSSMAG00000008614	cnot4a	99	92.222	Scophthalmus_maximus
ENSDARG00000007639	cnot4b	82	92.537	ENSSDUG00000018585	cnot4b	99	92.537	Seriola_dumerili
ENSDARG00000007639	cnot4b	93	89.964	ENSSDUG00000022635	cnot4a	100	92.251	Seriola_dumerili
ENSDARG00000007639	cnot4b	85	92.222	ENSSLDG00000015770	cnot4a	99	92.222	Seriola_lalandi_dorsalis
ENSDARG00000007639	cnot4b	100	64.540	ENSSLDG00000014347	cnot4b	100	65.025	Seriola_lalandi_dorsalis
ENSDARG00000007639	cnot4b	94	66.260	ENSSPUG00000004677	CNOT4	100	66.260	Sphenodon_punctatus
ENSDARG00000007639	cnot4b	86	89.964	ENSSPAG00000012329	cnot4a	100	89.964	Stegastes_partitus
ENSDARG00000007639	cnot4b	100	66.049	ENSSSCG00000021354	CNOT4	100	67.290	Sus_scrofa
ENSDARG00000007639	cnot4b	100	71.411	ENSTGUG00000009161	CNOT4	100	71.411	Taeniopygia_guttata
ENSDARG00000007639	cnot4b	88	91.513	ENSTRUG00000016861	cnot4a	100	89.247	Takifugu_rubripes
ENSDARG00000007639	cnot4b	91	85.185	ENSTNIG00000016000	cnot4a	99	85.185	Tetraodon_nigroviridis
ENSDARG00000007639	cnot4b	94	62.992	ENSTBEG00000002202	CNOT4	88	63.138	Tupaia_belangeri
ENSDARG00000007639	cnot4b	94	68.068	ENSTTRG00000005122	CNOT4	90	67.775	Tursiops_truncatus
ENSDARG00000007639	cnot4b	94	65.250	ENSUAMG00000026759	CNOT4	100	67.290	Ursus_americanus
ENSDARG00000007639	cnot4b	99	66.335	ENSUMAG00000015351	CNOT4	94	68.627	Ursus_maritimus
ENSDARG00000007639	cnot4b	100	66.173	ENSVVUG00000006200	CNOT4	100	67.290	Vulpes_vulpes
ENSDARG00000007639	cnot4b	94	69.565	ENSXETG00000010594	cnot4	100	69.565	Xenopus_tropicalis
ENSDARG00000007639	cnot4b	80	90.323	ENSXCOG00000020824	cnot4a	98	69.317	Xiphophorus_couchianus
ENSDARG00000007639	cnot4b	93	89.964	ENSXMAG00000016984	cnot4a	100	89.964	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004842	ubiquitin-protein transferase activity	21873635.	IBA	Function
GO:0004842	ubiquitin-protein transferase activity	-	IEA	Function
GO:0016567	protein ubiquitination	21873635.	IBA	Process
GO:0030014	CCR4-NOT complex	21873635.	IBA	Component
GO:0030014	CCR4-NOT complex	-	IEA	Component
GO:0046872	metal ion binding	-	IEA	Function