EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000007720 (Gene tree)
Gene ID: 436778
Gene Symbol: sub1b
Alias: rpo2tc1|sub1|zgc:92831
Full Name: SUB1 homolog%2C transcriptional regulator b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 9907 bases
Position: chr5:41143563-41153469
Accession: ZDB-GENE-040718-209
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000025042	PC4	PF02229.16	1.1e-24	1	1
ENSDARP00000143329	PC4	PF02229.16	1.1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000011229	-	871	-	ENSDARP00000025042	124 (aa)	-	Q6DGP6
ENSDART00000175766	-	2932	-	ENSDARP00000143329	124 (aa)	-	Q6DGP6

Gene Model

Click here to download ENSDARG00000007720's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000007720's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000007720	sub1b	99	77.236	ENSDARG00000053446	sub1a	99	79.675

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000007720	sub1b	100	66.142	ENSG00000113387	SUB1	100	71.654	Homo_sapiens
ENSDARG00000007720	sub1b	99	80.645	ENSAPOG00000005917	SUB1	99	80.645	Acanthochromis_polyacanthus
ENSDARG00000007720	sub1b	99	67.460	ENSAMEG00000006238	SUB1	94	73.016	Ailuropoda_melanoleuca
ENSDARG00000007720	sub1b	99	82.258	ENSACIG00000015976	sub1b	99	82.258	Amphilophus_citrinellus
ENSDARG00000007720	sub1b	95	72.269	ENSAOCG00000007313	-	94	72.269	Amphiprion_ocellaris
ENSDARG00000007720	sub1b	84	72.115	ENSAOCG00000002323	-	83	72.115	Amphiprion_ocellaris
ENSDARG00000007720	sub1b	52	78.125	ENSAPEG00000014618	-	61	78.125	Amphiprion_percula
ENSDARG00000007720	sub1b	74	77.174	ENSAPEG00000017151	-	72	77.174	Amphiprion_percula
ENSDARG00000007720	sub1b	99	81.452	ENSAPEG00000024347	sub1b	99	81.452	Amphiprion_percula
ENSDARG00000007720	sub1b	99	82.258	ENSATEG00000010340	sub1b	99	83.065	Anabas_testudineus
ENSDARG00000007720	sub1b	100	66.917	ENSACAG00000007974	SUB1	100	67.669	Anolis_carolinensis
ENSDARG00000007720	sub1b	100	66.142	ENSANAG00000011651	-	100	71.654	Aotus_nancymaae
ENSDARG00000007720	sub1b	99	67.742	ENSANAG00000023392	-	83	70.968	Aotus_nancymaae
ENSDARG00000007720	sub1b	99	82.258	ENSACLG00000016875	sub1b	63	82.258	Astatotilapia_calliptera
ENSDARG00000007720	sub1b	99	83.200	ENSAMXG00000037104	sub1b	99	84.800	Astyanax_mexicanus
ENSDARG00000007720	sub1b	100	66.142	ENSBTAG00000021965	SUB1	100	71.654	Bos_taurus
ENSDARG00000007720	sub1b	75	38.298	WBGene00011743	T13F2.2	98	38.017	Caenorhabditis_elegans
ENSDARG00000007720	sub1b	80	62.745	ENSCJAG00000018718	SUB1	98	69.608	Callithrix_jacchus
ENSDARG00000007720	sub1b	100	66.142	ENSCAFG00000016713	-	96	71.654	Canis_familiaris
ENSDARG00000007720	sub1b	100	66.929	ENSCAFG00000018879	-	88	72.441	Canis_familiaris
ENSDARG00000007720	sub1b	99	65.600	ENSCAFG00000024488	-	99	68.000	Canis_familiaris
ENSDARG00000007720	sub1b	100	66.929	ENSCAFG00020016840	-	100	72.441	Canis_lupus_dingo
ENSDARG00000007720	sub1b	99	68.504	ENSCAFG00020011479	-	76	70.079	Canis_lupus_dingo
ENSDARG00000007720	sub1b	100	66.142	ENSCHIG00000008460	SUB1	100	71.654	Capra_hircus
ENSDARG00000007720	sub1b	99	61.240	ENSTSYG00000014069	-	92	65.891	Carlito_syrichta
ENSDARG00000007720	sub1b	100	66.142	ENSTSYG00000029948	-	100	71.654	Carlito_syrichta
ENSDARG00000007720	sub1b	99	57.937	ENSTSYG00000035366	-	82	63.492	Carlito_syrichta
ENSDARG00000007720	sub1b	100	66.142	ENSCPOG00000031334	SUB1	100	71.654	Cavia_porcellus
ENSDARG00000007720	sub1b	100	66.142	ENSCCAG00000023605	-	100	71.654	Cebus_capucinus
ENSDARG00000007720	sub1b	100	59.524	ENSCCAG00000017043	-	93	64.286	Cebus_capucinus
ENSDARG00000007720	sub1b	100	63.780	ENSCCAG00000020604	-	100	67.717	Cebus_capucinus
ENSDARG00000007720	sub1b	100	64.567	ENSCCAG00000033751	-	95	70.079	Cebus_capucinus
ENSDARG00000007720	sub1b	100	66.142	ENSCATG00000031199	SUB1	100	71.654	Cercocebus_atys
ENSDARG00000007720	sub1b	100	65.625	ENSCLAG00000007522	SUB1	100	71.094	Chinchilla_lanigera
ENSDARG00000007720	sub1b	100	66.142	ENSCSAG00000017172	-	100	71.654	Chlorocebus_sabaeus
ENSDARG00000007720	sub1b	100	66.142	ENSCSAG00000019449	-	100	68.504	Chlorocebus_sabaeus
ENSDARG00000007720	sub1b	100	69.841	ENSCPBG00000024218	SUB1	79	72.222	Chrysemys_picta_bellii
ENSDARG00000007720	sub1b	100	66.142	ENSCANG00000029372	SUB1	100	71.654	Colobus_angolensis_palliatus
ENSDARG00000007720	sub1b	99	57.258	ENSCANG00000028665	-	89	60.484	Colobus_angolensis_palliatus
ENSDARG00000007720	sub1b	100	58.268	ENSCGRG00001014660	-	100	60.630	Cricetulus_griseus_chok1gshd
ENSDARG00000007720	sub1b	100	67.717	ENSCGRG00001003473	-	100	70.866	Cricetulus_griseus_chok1gshd
ENSDARG00000007720	sub1b	69	66.667	ENSCGRG00001016254	-	99	57.724	Cricetulus_griseus_chok1gshd
ENSDARG00000007720	sub1b	100	67.717	ENSCGRG00000001133	-	100	70.866	Cricetulus_griseus_crigri
ENSDARG00000007720	sub1b	100	58.268	ENSCGRG00000019368	-	100	60.630	Cricetulus_griseus_crigri
ENSDARG00000007720	sub1b	99	58.065	ENSCGRG00000001489	-	99	61.290	Cricetulus_griseus_crigri
ENSDARG00000007720	sub1b	99	64.286	ENSDNOG00000032396	-	99	69.841	Dasypus_novemcinctus
ENSDARG00000007720	sub1b	100	64.567	ENSDNOG00000040794	-	100	70.079	Dasypus_novemcinctus
ENSDARG00000007720	sub1b	100	68.504	ENSDORG00000013916	Sub1	100	71.654	Dipodomys_ordii
ENSDARG00000007720	sub1b	78	53.000	ENSEBUG00000008746	sub1a	74	47.059	Eptatretus_burgeri
ENSDARG00000007720	sub1b	100	66.142	ENSEASG00005007099	SUB1	100	71.654	Equus_asinus_asinus
ENSDARG00000007720	sub1b	100	66.142	ENSECAG00000012399	SUB1	100	71.654	Equus_caballus
ENSDARG00000007720	sub1b	81	74.510	ENSEEUG00000000436	SUB1	100	76.699	Erinaceus_europaeus
ENSDARG00000007720	sub1b	100	66.929	ENSFCAG00000037288	SUB1	100	72.441	Felis_catus
ENSDARG00000007720	sub1b	99	69.600	ENSFALG00000002143	SUB1	86	72.000	Ficedula_albicollis
ENSDARG00000007720	sub1b	100	66.142	ENSFDAG00000017179	SUB1	100	71.654	Fukomys_damarensis
ENSDARG00000007720	sub1b	100	43.750	ENSGALG00000027147	-	100	43.750	Gallus_gallus
ENSDARG00000007720	sub1b	100	69.048	ENSGALG00000003248	SUB1	100	71.429	Gallus_gallus
ENSDARG00000007720	sub1b	100	68.254	ENSGALG00000034905	-	100	70.635	Gallus_gallus
ENSDARG00000007720	sub1b	99	83.065	ENSGACG00000003912	sub1b	99	83.065	Gasterosteus_aculeatus
ENSDARG00000007720	sub1b	100	69.048	ENSGAGG00000013535	SUB1	100	71.429	Gopherus_agassizii
ENSDARG00000007720	sub1b	100	66.142	ENSGGOG00000040900	SUB1	100	71.654	Gorilla_gorilla
ENSDARG00000007720	sub1b	98	71.545	ENSHBUG00000013953	sub1b	77	81.553	Haplochromis_burtoni
ENSDARG00000007720	sub1b	100	66.142	ENSHGLG00000006749	SUB1	100	71.654	Heterocephalus_glaber_female
ENSDARG00000007720	sub1b	100	66.142	ENSHGLG00100014344	SUB1	100	71.654	Heterocephalus_glaber_male
ENSDARG00000007720	sub1b	98	75.610	ENSHCOG00000001809	sub1b	98	75.610	Hippocampus_comes
ENSDARG00000007720	sub1b	100	83.200	ENSIPUG00000008166	sub1	100	83.200	Ictalurus_punctatus
ENSDARG00000007720	sub1b	99	77.953	ENSIPUG00000024367	SUB1	99	77.953	Ictalurus_punctatus
ENSDARG00000007720	sub1b	100	66.929	ENSSTOG00000019364	SUB1	100	72.441	Ictidomys_tridecemlineatus
ENSDARG00000007720	sub1b	100	65.354	ENSJJAG00000018885	Sub1	100	68.504	Jaculus_jaculus
ENSDARG00000007720	sub1b	99	80.645	ENSLBEG00000010728	sub1b	99	80.645	Labrus_bergylta
ENSDARG00000007720	sub1b	52	87.500	ENSLACG00000001068	SUB1	98	87.500	Latimeria_chalumnae
ENSDARG00000007720	sub1b	99	76.613	ENSLOCG00000006692	sub1b	99	76.613	Lepisosteus_oculatus
ENSDARG00000007720	sub1b	100	67.717	ENSLAFG00000032088	-	100	71.654	Loxodonta_africana
ENSDARG00000007720	sub1b	100	67.717	ENSLAFG00000011006	-	100	71.654	Loxodonta_africana
ENSDARG00000007720	sub1b	100	66.142	ENSMFAG00000040728	SUB1	100	71.654	Macaca_fascicularis
ENSDARG00000007720	sub1b	99	58.730	ENSMFAG00000045643	-	61	62.992	Macaca_fascicularis
ENSDARG00000007720	sub1b	100	66.142	ENSMMUG00000046181	SUB1	100	71.654	Macaca_mulatta
ENSDARG00000007720	sub1b	100	66.142	ENSMNEG00000037046	SUB1	100	71.654	Macaca_nemestrina
ENSDARG00000007720	sub1b	100	64.567	ENSMLEG00000030509	-	94	69.291	Mandrillus_leucophaeus
ENSDARG00000007720	sub1b	99	57.258	ENSMLEG00000043436	-	89	61.290	Mandrillus_leucophaeus
ENSDARG00000007720	sub1b	100	66.142	ENSMLEG00000037017	-	100	71.654	Mandrillus_leucophaeus
ENSDARG00000007720	sub1b	99	80.645	ENSMAMG00000018428	sub1b	99	80.645	Mastacembelus_armatus
ENSDARG00000007720	sub1b	99	82.258	ENSMZEG00005021252	sub1b	99	82.258	Maylandia_zebra
ENSDARG00000007720	sub1b	100	69.048	ENSMGAG00000002906	SUB1	100	71.429	Meleagris_gallopavo
ENSDARG00000007720	sub1b	79	49.000	ENSMGAG00000001200	-	95	44.186	Meleagris_gallopavo
ENSDARG00000007720	sub1b	100	67.717	ENSMAUG00000020232	Sub1	100	70.866	Mesocricetus_auratus
ENSDARG00000007720	sub1b	100	66.142	ENSMICG00000014535	SUB1	100	71.654	Microcebus_murinus
ENSDARG00000007720	sub1b	100	66.929	ENSMOCG00000018930	-	100	70.079	Microtus_ochrogaster
ENSDARG00000007720	sub1b	100	57.937	ENSMOCG00000016424	-	100	60.630	Microtus_ochrogaster
ENSDARG00000007720	sub1b	83	75.000	ENSMODG00000020410	SUB1	100	65.468	Monodelphis_domestica
ENSDARG00000007720	sub1b	99	82.258	ENSMALG00000007163	sub1b	81	82.258	Monopterus_albus
ENSDARG00000007720	sub1b	100	67.717	MGP_CAROLIEiJ_G0019676	Sub1	100	70.866	Mus_caroli
ENSDARG00000007720	sub1b	100	67.717	ENSMUSG00000022205	Sub1	100	70.866	Mus_musculus
ENSDARG00000007720	sub1b	100	68.504	MGP_PahariEiJ_G0016056	Sub1	100	71.654	Mus_pahari
ENSDARG00000007720	sub1b	100	67.717	MGP_SPRETEiJ_G0020573	Sub1	100	70.866	Mus_spretus
ENSDARG00000007720	sub1b	100	66.142	ENSMPUG00000018418	-	100	71.654	Mustela_putorius_furo
ENSDARG00000007720	sub1b	100	66.929	ENSMPUG00000015185	-	100	72.441	Mustela_putorius_furo
ENSDARG00000007720	sub1b	100	65.354	ENSMLUG00000009236	-	95	68.504	Myotis_lucifugus
ENSDARG00000007720	sub1b	100	66.142	ENSMLUG00000013685	-	95	71.654	Myotis_lucifugus
ENSDARG00000007720	sub1b	100	67.460	ENSNGAG00000010782	-	84	68.254	Nannospalax_galili
ENSDARG00000007720	sub1b	100	61.600	ENSNGAG00000017212	-	100	63.200	Nannospalax_galili
ENSDARG00000007720	sub1b	100	67.717	ENSNGAG00000014072	-	100	70.866	Nannospalax_galili
ENSDARG00000007720	sub1b	82	81.553	ENSNBRG00000008451	sub1b	84	81.553	Neolamprologus_brichardi
ENSDARG00000007720	sub1b	100	64.286	ENSNLEG00000035968	-	100	69.048	Nomascus_leucogenys
ENSDARG00000007720	sub1b	99	66.667	ENSNLEG00000018383	-	94	72.222	Nomascus_leucogenys
ENSDARG00000007720	sub1b	100	65.354	ENSNLEG00000036068	SUB1	100	70.866	Nomascus_leucogenys
ENSDARG00000007720	sub1b	100	69.048	ENSMEUG00000007770	SUB1	100	72.222	Notamacropus_eugenii
ENSDARG00000007720	sub1b	100	65.354	ENSOPRG00000012887	SUB1	100	70.866	Ochotona_princeps
ENSDARG00000007720	sub1b	100	66.142	ENSODEG00000001937	-	100	71.654	Octodon_degus
ENSDARG00000007720	sub1b	85	67.593	ENSODEG00000015114	-	99	69.106	Octodon_degus
ENSDARG00000007720	sub1b	85	71.963	ENSODEG00000014558	-	84	68.504	Octodon_degus
ENSDARG00000007720	sub1b	99	72.800	ENSOANG00000002328	SUB1	95	75.397	Ornithorhynchus_anatinus
ENSDARG00000007720	sub1b	100	66.142	ENSOCUG00000006262	SUB1	60	71.654	Oryctolagus_cuniculus
ENSDARG00000007720	sub1b	98	66.935	ENSOGAG00000000337	-	100	72.581	Otolemur_garnettii
ENSDARG00000007720	sub1b	100	66.142	ENSOGAG00000009012	-	100	71.654	Otolemur_garnettii
ENSDARG00000007720	sub1b	100	66.142	ENSOARG00000012154	SUB1	100	71.654	Ovis_aries
ENSDARG00000007720	sub1b	100	66.142	ENSPPAG00000011212	SUB1	100	71.654	Pan_paniscus
ENSDARG00000007720	sub1b	100	66.929	ENSPPRG00000008557	SUB1	100	72.441	Panthera_pardus
ENSDARG00000007720	sub1b	100	66.929	ENSPTIG00000009466	SUB1	100	72.441	Panthera_tigris_altaica
ENSDARG00000007720	sub1b	100	66.142	ENSPTRG00000048895	SUB1	100	71.654	Pan_troglodytes
ENSDARG00000007720	sub1b	100	60.630	ENSPTRG00000041644	-	100	66.142	Pan_troglodytes
ENSDARG00000007720	sub1b	99	66.667	ENSPANG00000002644	-	94	72.222	Papio_anubis
ENSDARG00000007720	sub1b	99	66.667	ENSPANG00000000339	-	96	72.222	Papio_anubis
ENSDARG00000007720	sub1b	99	65.079	ENSPANG00000000672	-	90	69.841	Papio_anubis
ENSDARG00000007720	sub1b	99	59.677	ENSPANG00000033272	-	89	62.400	Papio_anubis
ENSDARG00000007720	sub1b	99	69.919	ENSPANG00000035601	-	100	69.841	Papio_anubis
ENSDARG00000007720	sub1b	100	79.200	ENSPKIG00000016923	sub1b	100	79.200	Paramormyrops_kingsleyae
ENSDARG00000007720	sub1b	100	69.048	ENSPSIG00000005731	SUB1	95	71.429	Pelodiscus_sinensis
ENSDARG00000007720	sub1b	100	69.048	ENSPCIG00000020907	-	100	72.222	Phascolarctos_cinereus
ENSDARG00000007720	sub1b	100	67.200	ENSPCIG00000020827	-	100	67.200	Phascolarctos_cinereus
ENSDARG00000007720	sub1b	100	61.417	ENSPPYG00000018347	-	100	66.929	Pongo_abelii
ENSDARG00000007720	sub1b	100	66.142	ENSPPYG00000015379	SUB1	100	71.654	Pongo_abelii
ENSDARG00000007720	sub1b	100	66.142	ENSPCOG00000014391	SUB1	100	71.654	Propithecus_coquereli
ENSDARG00000007720	sub1b	100	66.142	ENSPVAG00000004785	SUB1	100	71.654	Pteropus_vampyrus
ENSDARG00000007720	sub1b	99	82.258	ENSPNYG00000010975	sub1b	99	82.258	Pundamilia_nyererei
ENSDARG00000007720	sub1b	99	76.800	ENSPNAG00000008693	sub1a	99	76.000	Pygocentrus_nattereri
ENSDARG00000007720	sub1b	99	85.484	ENSPNAG00000005998	sub1b	99	85.484	Pygocentrus_nattereri
ENSDARG00000007720	sub1b	100	68.504	ENSRNOG00000050563	Sub1	100	71.654	Rattus_norvegicus
ENSDARG00000007720	sub1b	100	64.286	ENSRBIG00000031233	SUB1	100	69.841	Rhinopithecus_bieti
ENSDARG00000007720	sub1b	99	62.903	ENSRROG00000042718	-	90	66.129	Rhinopithecus_roxellana
ENSDARG00000007720	sub1b	100	66.142	ENSRROG00000040438	SUB1	100	71.654	Rhinopithecus_roxellana
ENSDARG00000007720	sub1b	100	66.142	ENSSBOG00000026994	SUB1	100	71.654	Saimiri_boliviensis_boliviensis
ENSDARG00000007720	sub1b	100	69.048	ENSSHAG00000014986	SUB1	100	72.222	Sarcophilus_harrisii
ENSDARG00000007720	sub1b	99	73.810	ENSSFOG00015018386	sub1b	99	76.984	Scleropages_formosus
ENSDARG00000007720	sub1b	100	74.400	ENSSFOG00015017283	sub1b	100	74.400	Scleropages_formosus
ENSDARG00000007720	sub1b	99	81.452	ENSSMAG00000000313	sub1b	99	81.452	Scophthalmus_maximus
ENSDARG00000007720	sub1b	99	80.645	ENSSDUG00000013854	sub1b	76	80.645	Seriola_dumerili
ENSDARG00000007720	sub1b	99	80.645	ENSSLDG00000000852	sub1b	99	80.645	Seriola_lalandi_dorsalis
ENSDARG00000007720	sub1b	100	69.048	ENSSPUG00000016817	SUB1	100	71.429	Sphenodon_punctatus
ENSDARG00000007720	sub1b	99	83.065	ENSSPAG00000019363	sub1b	99	83.065	Stegastes_partitus
ENSDARG00000007720	sub1b	100	66.142	ENSSSCG00000032650	-	100	71.654	Sus_scrofa
ENSDARG00000007720	sub1b	99	66.667	ENSSSCG00000040294	-	86	72.222	Sus_scrofa
ENSDARG00000007720	sub1b	100	68.254	ENSTGUG00000001918	SUB1	100	70.635	Taeniopygia_guttata
ENSDARG00000007720	sub1b	99	79.032	ENSTRUG00000024420	sub1b	99	79.032	Takifugu_rubripes
ENSDARG00000007720	sub1b	99	79.032	ENSTNIG00000002700	sub1b	99	79.032	Tetraodon_nigroviridis
ENSDARG00000007720	sub1b	100	65.354	ENSTBEG00000004053	-	100	70.866	Tupaia_belangeri
ENSDARG00000007720	sub1b	100	65.354	ENSTBEG00000006504	-	100	70.866	Tupaia_belangeri
ENSDARG00000007720	sub1b	100	65.354	ENSTBEG00000011247	-	99	67.717	Tupaia_belangeri
ENSDARG00000007720	sub1b	100	66.142	ENSTBEG00000012861	-	100	68.504	Tupaia_belangeri
ENSDARG00000007720	sub1b	100	64.567	ENSTBEG00000001790	-	100	68.504	Tupaia_belangeri
ENSDARG00000007720	sub1b	99	61.111	ENSTBEG00000015821	-	100	66.667	Tupaia_belangeri
ENSDARG00000007720	sub1b	81	72.549	ENSTTRG00000017324	SUB1	100	74.757	Tursiops_truncatus
ENSDARG00000007720	sub1b	100	66.929	ENSUAMG00000000182	SUB1	100	72.441	Ursus_americanus
ENSDARG00000007720	sub1b	100	66.929	ENSUMAG00000013792	SUB1	100	72.441	Ursus_maritimus
ENSDARG00000007720	sub1b	100	61.905	ENSVPAG00000011012	SUB1	100	66.667	Vicugna_pacos
ENSDARG00000007720	sub1b	100	66.929	ENSVVUG00000022166	-	100	72.441	Vulpes_vulpes
ENSDARG00000007720	sub1b	89	61.062	ENSVVUG00000025193	-	92	68.182	Vulpes_vulpes
ENSDARG00000007720	sub1b	100	68.750	ENSXETG00000027218	sub1	100	71.875	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003713	transcription coactivator activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005667	transcription factor complex	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0060261	positive regulation of transcription initiation from RNA polymerase II promoter	21873635.	IBA	Process