EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000007744 (Gene tree)
Gene ID: 325037
Gene Symbol: tsr1
Alias: fc52b09|wu:fc52b09|zgc:123319
Full Name: TSR1%2C 20S rRNA accumulation%2C homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 21006 bases
Position: chr15:25635326-25656331
Accession: ZDB-GENE-030131-3762
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000116271	AARP2CN	PF08142.12	4.6e-23	1	1
ENSDARP00000136648	AARP2CN	PF08142.12	8.9e-23	1	1
ENSDARP00000052644	AARP2CN	PF08142.12	9.7e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000135409	-	1801	-	ENSDARP00000116271	476 (aa)	-	F1Q594
ENSDART00000162240	-	2616	-	ENSDARP00000136648	822 (aa)	-	A0A0R4IKX4
ENSDART00000149256	-	1547	-	ENSDARP00000123769	351 (aa)	-	F8W570
ENSDART00000052645	-	2653	XM_005157568	ENSDARP00000052644	836 (aa)	XP_005157625	E7FCX4

Gene Model

Click here to download ENSDARG00000007744's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000007744's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000007744	tsr1	97	55.309	ENSG00000167721	TSR1	98	54.733	Homo_sapiens
ENSDARG00000007744	tsr1	100	75.797	ENSAPOG00000020891	tsr1	100	75.948	Acanthochromis_polyacanthus
ENSDARG00000007744	tsr1	99	53.541	ENSAMEG00000007599	TSR1	99	53.978	Ailuropoda_melanoleuca
ENSDARG00000007744	tsr1	100	75.695	ENSACIG00000007090	tsr1	100	75.453	Amphilophus_citrinellus
ENSDARG00000007744	tsr1	100	75.779	ENSAOCG00000023284	tsr1	100	75.919	Amphiprion_ocellaris
ENSDARG00000007744	tsr1	93	75.613	ENSAPEG00000008452	tsr1	99	75.765	Amphiprion_percula
ENSDARG00000007744	tsr1	100	75.829	ENSATEG00000021961	tsr1	100	75.474	Anabas_testudineus
ENSDARG00000007744	tsr1	91	58.511	ENSAPLG00000013422	TSR1	100	58.511	Anas_platyrhynchos
ENSDARG00000007744	tsr1	80	48.718	ENSACAG00000000859	TSR1	92	48.387	Anolis_carolinensis
ENSDARG00000007744	tsr1	97	54.895	ENSANAG00000031071	TSR1	98	54.202	Aotus_nancymaae
ENSDARG00000007744	tsr1	100	75.841	ENSACLG00000007595	tsr1	99	75.451	Astatotilapia_calliptera
ENSDARG00000007744	tsr1	93	76.877	ENSAMXG00000008470	tsr1	90	78.824	Astyanax_mexicanus
ENSDARG00000007744	tsr1	99	55.257	ENSBTAG00000004225	TSR1	99	54.567	Bos_taurus
ENSDARG00000007744	tsr1	96	39.801	WBGene00006497	tag-151	96	39.801	Caenorhabditis_elegans
ENSDARG00000007744	tsr1	97	54.161	ENSCJAG00000012456	TSR1	98	53.480	Callithrix_jacchus
ENSDARG00000007744	tsr1	99	54.457	ENSCAFG00000002106	-	99	53.902	Canis_familiaris
ENSDARG00000007744	tsr1	89	51.957	ENSCAFG00000019273	-	100	56.140	Canis_familiaris
ENSDARG00000007744	tsr1	99	54.212	ENSCAFG00020009728	TSR1	99	53.661	Canis_lupus_dingo
ENSDARG00000007744	tsr1	99	55.814	ENSCHIG00000023935	TSR1	99	55.114	Capra_hircus
ENSDARG00000007744	tsr1	99	54.590	ENSTSYG00000005468	TSR1	99	53.911	Carlito_syrichta
ENSDARG00000007744	tsr1	92	54.090	ENSCPOG00000014833	TSR1	99	53.826	Cavia_porcellus
ENSDARG00000007744	tsr1	92	53.158	ENSCCAG00000028962	TSR1	98	52.455	Cebus_capucinus
ENSDARG00000007744	tsr1	99	54.568	ENSCATG00000044262	TSR1	99	54.251	Cercocebus_atys
ENSDARG00000007744	tsr1	99	54.712	ENSCLAG00000005567	TSR1	99	53.856	Chinchilla_lanigera
ENSDARG00000007744	tsr1	99	54.689	ENSCSAG00000013788	TSR1	99	54.371	Chlorocebus_sabaeus
ENSDARG00000007744	tsr1	98	55.037	ENSCPBG00000020363	TSR1	98	54.952	Chrysemys_picta_bellii
ENSDARG00000007744	tsr1	96	44.472	ENSCING00000020658	-	99	44.099	Ciona_intestinalis
ENSDARG00000007744	tsr1	96	44.567	ENSCSAVG00000001875	-	99	44.612	Ciona_savignyi
ENSDARG00000007744	tsr1	88	69.595	ENSCANG00000033056	TSR1	95	69.595	Colobus_angolensis_palliatus
ENSDARG00000007744	tsr1	99	54.634	ENSCGRG00001023942	Tsr1	99	54.024	Cricetulus_griseus_chok1gshd
ENSDARG00000007744	tsr1	93	60.848	ENSCGRG00000013015	Tsr1	97	64.888	Cricetulus_griseus_crigri
ENSDARG00000007744	tsr1	100	72.389	ENSCSEG00000013009	tsr1	100	72.269	Cynoglossus_semilaevis
ENSDARG00000007744	tsr1	100	72.467	ENSCVAG00000000506	tsr1	100	72.343	Cyprinodon_variegatus
ENSDARG00000007744	tsr1	99	55.257	ENSDNOG00000004715	TSR1	99	56.215	Dasypus_novemcinctus
ENSDARG00000007744	tsr1	96	47.909	ENSDORG00000023234	-	97	57.585	Dipodomys_ordii
ENSDARG00000007744	tsr1	99	54.212	ENSDORG00000016371	-	99	53.602	Dipodomys_ordii
ENSDARG00000007744	tsr1	96	44.540	FBgn0037073	Tsr1	96	43.866	Drosophila_melanogaster
ENSDARG00000007744	tsr1	87	67.213	ENSETEG00000017534	TSR1	89	67.213	Echinops_telfairi
ENSDARG00000007744	tsr1	95	51.334	ENSEBUG00000013731	TSR1	98	51.334	Eptatretus_burgeri
ENSDARG00000007744	tsr1	99	55.746	ENSEASG00005009302	TSR1	97	54.928	Equus_asinus_asinus
ENSDARG00000007744	tsr1	99	55.814	ENSECAG00000009114	TSR1	99	54.874	Equus_caballus
ENSDARG00000007744	tsr1	99	73.229	ENSELUG00000020984	tsr1	96	73.571	Esox_lucius
ENSDARG00000007744	tsr1	99	54.712	ENSFCAG00000006313	TSR1	99	54.152	Felis_catus
ENSDARG00000007744	tsr1	100	59.492	ENSFALG00000006532	TSR1	99	59.371	Ficedula_albicollis
ENSDARG00000007744	tsr1	99	54.412	ENSFDAG00000006038	TSR1	99	53.799	Fukomys_damarensis
ENSDARG00000007744	tsr1	100	73.150	ENSFHEG00000003626	tsr1	99	72.749	Fundulus_heteroclitus
ENSDARG00000007744	tsr1	99	69.843	ENSGMOG00000010336	tsr1	99	70.084	Gadus_morhua
ENSDARG00000007744	tsr1	99	73.491	ENSGAFG00000012993	tsr1	99	73.438	Gambusia_affinis
ENSDARG00000007744	tsr1	99	73.469	ENSGACG00000010843	tsr1	99	72.749	Gasterosteus_aculeatus
ENSDARG00000007744	tsr1	82	36.552	ENSGAGG00000000440	-	98	34.501	Gopherus_agassizii
ENSDARG00000007744	tsr1	98	55.610	ENSGAGG00000025619	-	99	54.890	Gopherus_agassizii
ENSDARG00000007744	tsr1	97	55.556	ENSGGOG00000001704	TSR1	98	54.976	Gorilla_gorilla
ENSDARG00000007744	tsr1	100	75.653	ENSHBUG00000017904	tsr1	99	75.226	Haplochromis_burtoni
ENSDARG00000007744	tsr1	99	54.712	ENSHGLG00000012806	-	99	54.152	Heterocephalus_glaber_female
ENSDARG00000007744	tsr1	96	48.990	ENSHGLG00000015688	-	98	48.194	Heterocephalus_glaber_female
ENSDARG00000007744	tsr1	99	54.712	ENSHGLG00100015392	TSR1	99	54.152	Heterocephalus_glaber_male
ENSDARG00000007744	tsr1	100	74.061	ENSHCOG00000001432	tsr1	100	74.061	Hippocampus_comes
ENSDARG00000007744	tsr1	99	77.817	ENSIPUG00000004618	tsr1	99	78.292	Ictalurus_punctatus
ENSDARG00000007744	tsr1	99	55.800	ENSSTOG00000011819	TSR1	99	54.808	Ictidomys_tridecemlineatus
ENSDARG00000007744	tsr1	90	53.289	ENSJJAG00000019505	Tsr1	94	52.362	Jaculus_jaculus
ENSDARG00000007744	tsr1	100	73.109	ENSKMAG00000005763	tsr1	99	73.349	Kryptolebias_marmoratus
ENSDARG00000007744	tsr1	100	74.232	ENSLBEG00000021823	tsr1	99	73.903	Labrus_bergylta
ENSDARG00000007744	tsr1	100	58.293	ENSLACG00000002197	TSR1	100	58.193	Latimeria_chalumnae
ENSDARG00000007744	tsr1	90	75.000	ENSLOCG00000006491	TSR1	98	75.000	Lepisosteus_oculatus
ENSDARG00000007744	tsr1	70	49.799	ENSLAFG00000022396	-	91	51.292	Loxodonta_africana
ENSDARG00000007744	tsr1	99	54.811	ENSMFAG00000021330	TSR1	99	54.491	Macaca_fascicularis
ENSDARG00000007744	tsr1	99	54.689	ENSMMUG00000017519	TSR1	99	54.371	Macaca_mulatta
ENSDARG00000007744	tsr1	99	54.689	ENSMNEG00000031382	TSR1	99	54.371	Macaca_nemestrina
ENSDARG00000007744	tsr1	99	54.446	ENSMLEG00000036733	TSR1	99	54.132	Mandrillus_leucophaeus
ENSDARG00000007744	tsr1	100	75.474	ENSMAMG00000017918	tsr1	99	75.237	Mastacembelus_armatus
ENSDARG00000007744	tsr1	100	75.721	ENSMZEG00005007477	tsr1	100	75.361	Maylandia_zebra
ENSDARG00000007744	tsr1	100	56.130	ENSMGAG00000005576	TSR1	100	56.590	Meleagris_gallopavo
ENSDARG00000007744	tsr1	99	55.460	ENSMICG00000012943	TSR1	99	54.644	Microcebus_murinus
ENSDARG00000007744	tsr1	99	54.501	ENSMOCG00000022764	Tsr1	99	53.650	Microtus_ochrogaster
ENSDARG00000007744	tsr1	100	75.995	ENSMMOG00000014280	tsr1	100	75.875	Mola_mola
ENSDARG00000007744	tsr1	99	56.463	ENSMODG00000010658	TSR1	99	56.341	Monodelphis_domestica
ENSDARG00000007744	tsr1	100	75.682	ENSMALG00000011681	tsr1	100	75.208	Monopterus_albus
ENSDARG00000007744	tsr1	99	54.878	MGP_CAROLIEiJ_G0016727	Tsr1	99	54.024	Mus_caroli
ENSDARG00000007744	tsr1	99	55.122	ENSMUSG00000038335	Tsr1	99	54.268	Mus_musculus
ENSDARG00000007744	tsr1	99	55.134	MGP_PahariEiJ_G0017864	Tsr1	99	54.279	Mus_pahari
ENSDARG00000007744	tsr1	99	55.122	MGP_SPRETEiJ_G0017570	Tsr1	99	54.268	Mus_spretus
ENSDARG00000007744	tsr1	81	57.399	ENSMPUG00000013000	TSR1	100	56.808	Mustela_putorius_furo
ENSDARG00000007744	tsr1	99	55.134	ENSMLUG00000003505	TSR1	99	54.327	Myotis_lucifugus
ENSDARG00000007744	tsr1	83	43.493	ENSNGAG00000020455	-	95	45.333	Nannospalax_galili
ENSDARG00000007744	tsr1	100	75.891	ENSNBRG00000020728	tsr1	99	75.416	Neolamprologus_brichardi
ENSDARG00000007744	tsr1	91	62.402	ENSNLEG00000017184	TSR1	95	65.507	Nomascus_leucogenys
ENSDARG00000007744	tsr1	99	52.869	ENSMEUG00000015828	TSR1	99	52.259	Notamacropus_eugenii
ENSDARG00000007744	tsr1	100	76.082	ENSONIG00000013131	tsr1	100	75.962	Oreochromis_niloticus
ENSDARG00000007744	tsr1	89	60.794	ENSOANG00000008637	TSR1	96	64.917	Ornithorhynchus_anatinus
ENSDARG00000007744	tsr1	99	56.044	ENSOCUG00000014256	TSR1	99	54.811	Oryctolagus_cuniculus
ENSDARG00000007744	tsr1	100	72.695	ENSORLG00000004926	tsr1	99	73.174	Oryzias_latipes
ENSDARG00000007744	tsr1	100	73.072	ENSORLG00020008792	tsr1	99	73.381	Oryzias_latipes_hni
ENSDARG00000007744	tsr1	100	72.934	ENSORLG00015013838	tsr1	99	73.413	Oryzias_latipes_hsok
ENSDARG00000007744	tsr1	100	73.428	ENSOMEG00000004830	tsr1	99	72.335	Oryzias_melastigma
ENSDARG00000007744	tsr1	99	53.939	ENSOGAG00000004492	TSR1	99	53.930	Otolemur_garnettii
ENSDARG00000007744	tsr1	99	55.746	ENSOARG00000015437	TSR1	97	55.048	Ovis_aries
ENSDARG00000007744	tsr1	97	55.309	ENSPPAG00000036355	TSR1	98	54.733	Pan_paniscus
ENSDARG00000007744	tsr1	99	54.590	ENSPPRG00000015519	-	99	53.611	Panthera_pardus
ENSDARG00000007744	tsr1	99	54.590	ENSPTIG00000010608	TSR1	99	53.611	Panthera_tigris_altaica
ENSDARG00000007744	tsr1	97	55.309	ENSPTRG00000008547	TSR1	98	54.733	Pan_troglodytes
ENSDARG00000007744	tsr1	99	52.132	ENSPANG00000024463	TSR1	99	52.455	Papio_anubis
ENSDARG00000007744	tsr1	100	73.778	ENSPKIG00000013972	tsr1	100	73.971	Paramormyrops_kingsleyae
ENSDARG00000007744	tsr1	87	54.951	ENSPSIG00000018258	TSR1	99	54.672	Pelodiscus_sinensis
ENSDARG00000007744	tsr1	99	74.056	ENSPMGG00000011577	tsr1	99	73.812	Periophthalmus_magnuspinnatus
ENSDARG00000007744	tsr1	99	54.090	ENSPEMG00000018033	Tsr1	99	53.174	Peromyscus_maniculatus_bairdii
ENSDARG00000007744	tsr1	99	55.976	ENSPCIG00000009357	TSR1	97	55.976	Phascolarctos_cinereus
ENSDARG00000007744	tsr1	99	74.578	ENSPFOG00000004483	TSR1	99	74.517	Poecilia_formosa
ENSDARG00000007744	tsr1	99	74.466	ENSPLAG00000022320	tsr1	97	83.095	Poecilia_latipinna
ENSDARG00000007744	tsr1	99	74.584	ENSPMEG00000004577	tsr1	99	73.753	Poecilia_mexicana
ENSDARG00000007744	tsr1	97	74.694	ENSPREG00000010354	tsr1	97	72.608	Poecilia_reticulata
ENSDARG00000007744	tsr1	97	50.556	ENSPPYG00000007792	TSR1	98	49.579	Pongo_abelii
ENSDARG00000007744	tsr1	83	48.973	ENSPCAG00000012973	-	70	64.444	Procavia_capensis
ENSDARG00000007744	tsr1	99	55.337	ENSPCOG00000017928	TSR1	99	54.524	Propithecus_coquereli
ENSDARG00000007744	tsr1	99	54.401	ENSPVAG00000002162	TSR1	99	53.726	Pteropus_vampyrus
ENSDARG00000007744	tsr1	100	76.082	ENSPNYG00000016163	tsr1	99	75.692	Pundamilia_nyererei
ENSDARG00000007744	tsr1	100	80.473	ENSPNAG00000008659	tsr1	100	80.355	Pygocentrus_nattereri
ENSDARG00000007744	tsr1	99	54.279	ENSRNOG00000002980	Tsr1	99	53.846	Rattus_norvegicus
ENSDARG00000007744	tsr1	99	54.689	ENSRBIG00000040016	TSR1	99	54.132	Rhinopithecus_bieti
ENSDARG00000007744	tsr1	99	54.689	ENSRROG00000030361	TSR1	99	54.132	Rhinopithecus_roxellana
ENSDARG00000007744	tsr1	97	54.647	ENSSBOG00000020785	TSR1	98	53.779	Saimiri_boliviensis_boliviensis
ENSDARG00000007744	tsr1	99	55.732	ENSSHAG00000011394	TSR1	99	55.366	Sarcophilus_harrisii
ENSDARG00000007744	tsr1	100	74.758	ENSSFOG00015005455	tsr1	100	74.636	Scleropages_formosus
ENSDARG00000007744	tsr1	99	75.149	ENSSMAG00000009504	tsr1	99	75.030	Scophthalmus_maximus
ENSDARG00000007744	tsr1	100	75.948	ENSSDUG00000012074	tsr1	99	76.066	Seriola_dumerili
ENSDARG00000007744	tsr1	100	75.948	ENSSLDG00000002031	tsr1	99	75.948	Seriola_lalandi_dorsalis
ENSDARG00000007744	tsr1	92	56.175	ENSSARG00000000759	TSR1	93	56.175	Sorex_araneus
ENSDARG00000007744	tsr1	99	58.617	ENSSPUG00000007042	TSR1	99	58.537	Sphenodon_punctatus
ENSDARG00000007744	tsr1	99	75.386	ENSSPAG00000021951	tsr1	99	75.505	Stegastes_partitus
ENSDARG00000007744	tsr1	99	55.692	ENSSSCG00000038534	TSR1	99	54.994	Sus_scrofa
ENSDARG00000007744	tsr1	90	61.051	ENSTGUG00000005883	TSR1	100	60.811	Taeniopygia_guttata
ENSDARG00000007744	tsr1	99	75.695	ENSTRUG00000004665	tsr1	99	75.816	Takifugu_rubripes
ENSDARG00000007744	tsr1	99	75.396	ENSTNIG00000016196	tsr1	100	74.909	Tetraodon_nigroviridis
ENSDARG00000007744	tsr1	67	73.846	ENSTBEG00000015275	-	66	73.846	Tupaia_belangeri
ENSDARG00000007744	tsr1	99	56.112	ENSTTRG00000001177	TSR1	99	55.409	Tursiops_truncatus
ENSDARG00000007744	tsr1	99	54.345	ENSUAMG00000025160	TSR1	99	53.670	Ursus_americanus
ENSDARG00000007744	tsr1	95	54.119	ENSUMAG00000009294	TSR1	98	53.425	Ursus_maritimus
ENSDARG00000007744	tsr1	90	48.843	ENSVPAG00000000228	TSR1	99	47.254	Vicugna_pacos
ENSDARG00000007744	tsr1	99	54.335	ENSVVUG00000021767	TSR1	99	53.782	Vulpes_vulpes
ENSDARG00000007744	tsr1	100	52.828	ENSXETG00000023797	tsr1	100	52.828	Xenopus_tropicalis
ENSDARG00000007744	tsr1	99	73.462	ENSXCOG00000009635	tsr1	99	73.035	Xiphophorus_couchianus
ENSDARG00000007744	tsr1	99	73.341	ENSXMAG00000001397	tsr1	97	72.837	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0030688	preribosome, small subunit precursor	21873635.	IBA	Component
GO:0034511	U3 snoRNA binding	21873635.	IBA	Function
GO:0042254	ribosome biogenesis	-	IEA	Process