EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000007863 (Gene tree)
Gene ID: 393388
Gene Symbol: tra2a
Alias: zgc:64175
Full Name: transformer 2 alpha homolog
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 14171 bases
Position: chr19:20177208-20191378
Accession: ZDB-GENE-040426-1391
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000126060	RRM_1	PF00076.22	6.2e-20	1	1
ENSDARP00000126162	RRM_1	PF00076.22	6.2e-20	1	1
ENSDARP00000010426	RRM_1	PF00076.22	1.3e-19	1	1
ENSDARP00000129899	RRM_1	PF00076.22	1.3e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000151175	-	809	-	ENSDARP00000126162	200 (aa)	-	I3ITA0
ENSDART00000133873	-	1043	-	ENSDARP00000126113	98 (aa)	-	I3IT57
ENSDART00000143221	-	701	-	-	- (aa)	-	-
ENSDART00000145115	-	984	-	ENSDARP00000126060	200 (aa)	-	I3ITA0
ENSDART00000145225	-	743	-	ENSDARP00000126020	98 (aa)	-	I3IT57
ENSDART00000166807	-	2920	-	ENSDARP00000129899	298 (aa)	-	A0A0R4IBY2
ENSDART00000008595	-	1486	XM_005170007	ENSDARP00000010426	297 (aa)	XP_005170064	Q7T2A0

Gene Model

Click here to download ENSDARG00000007863's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000007863's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000007863	tra2a	61	68.132	ENSDARG00000002168	tra2b	52	71.711
ENSDARG00000007863	tra2a	61	36.000	ENSDARG00000002710	ncl	56	35.577

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000007863	tra2a	90	76.471	ENSG00000164548	TRA2A	83	77.515	Homo_sapiens
ENSDARG00000007863	tra2a	90	76.103	ENSAPOG00000017425	tra2a	71	76.506	Acanthochromis_polyacanthus
ENSDARG00000007863	tra2a	72	80.405	ENSACIG00000001333	tra2a	78	79.518	Amphilophus_citrinellus
ENSDARG00000007863	tra2a	90	76.838	ENSAOCG00000015445	tra2a	55	79.882	Amphiprion_ocellaris
ENSDARG00000007863	tra2a	90	76.838	ENSAPEG00000018557	tra2a	71	87.234	Amphiprion_percula
ENSDARG00000007863	tra2a	90	78.832	ENSATEG00000000671	tra2a	56	84.211	Anabas_testudineus
ENSDARG00000007863	tra2a	86	76.834	ENSAPLG00000013689	TRA2A	58	80.380	Anas_platyrhynchos
ENSDARG00000007863	tra2a	90	79.104	ENSACAG00000013502	TRA2A	90	79.104	Anolis_carolinensis
ENSDARG00000007863	tra2a	51	95.050	ENSANAG00000035184	TRA2A	73	80.606	Aotus_nancymaae
ENSDARG00000007863	tra2a	90	77.941	ENSACLG00000024845	tra2a	55	82.840	Astatotilapia_calliptera
ENSDARG00000007863	tra2a	72	90.909	ENSAMXG00000005553	tra2a	56	92.248	Astyanax_mexicanus
ENSDARG00000007863	tra2a	90	76.753	ENSBTAG00000012622	TRA2A	57	82.500	Bos_taurus
ENSDARG00000007863	tra2a	90	76.471	ENSCJAG00000001509	-	57	81.988	Callithrix_jacchus
ENSDARG00000007863	tra2a	94	76.678	ENSCJAG00000045802	-	60	81.250	Callithrix_jacchus
ENSDARG00000007863	tra2a	90	76.753	ENSCAFG00000002788	TRA2A	57	82.500	Canis_familiaris
ENSDARG00000007863	tra2a	87	73.446	ENSCAFG00020002745	TRA2A	60	82.500	Canis_lupus_dingo
ENSDARG00000007863	tra2a	90	76.471	ENSTSYG00000000388	TRA2A	83	77.515	Carlito_syrichta
ENSDARG00000007863	tra2a	86	65.517	ENSCAPG00000017377	TRA2A	55	62.733	Cavia_aperea
ENSDARG00000007863	tra2a	90	76.471	ENSCPOG00000010739	TRA2A	57	81.988	Cavia_porcellus
ENSDARG00000007863	tra2a	90	76.471	ENSCCAG00000019576	TRA2A	83	77.515	Cebus_capucinus
ENSDARG00000007863	tra2a	90	76.471	ENSCATG00000041219	TRA2A	83	77.515	Cercocebus_atys
ENSDARG00000007863	tra2a	90	76.471	ENSCLAG00000007917	TRA2A	57	81.988	Chinchilla_lanigera
ENSDARG00000007863	tra2a	90	76.471	ENSCSAG00000014051	TRA2A	57	81.988	Chlorocebus_sabaeus
ENSDARG00000007863	tra2a	90	76.103	ENSCHOG00000001130	TRA2A	57	81.988	Choloepus_hoffmanni
ENSDARG00000007863	tra2a	90	76.471	ENSCPBG00000022466	TRA2A	56	82.390	Chrysemys_picta_bellii
ENSDARG00000007863	tra2a	90	76.471	ENSCANG00000031292	TRA2A	83	77.515	Colobus_angolensis_palliatus
ENSDARG00000007863	tra2a	87	80.925	ENSCGRG00001019980	Tra2a	90	77.206	Cricetulus_griseus_chok1gshd
ENSDARG00000007863	tra2a	87	80.925	ENSCGRG00000006087	Tra2a	60	80.982	Cricetulus_griseus_crigri
ENSDARG00000007863	tra2a	90	74.088	ENSCSEG00000012193	tra2a	55	88.182	Cynoglossus_semilaevis
ENSDARG00000007863	tra2a	90	76.838	ENSDNOG00000039446	TRA2A	57	81.988	Dasypus_novemcinctus
ENSDARG00000007863	tra2a	87	80.925	ENSDORG00000009361	Tra2a	90	77.778	Dipodomys_ordii
ENSDARG00000007863	tra2a	76	78.431	ENSETEG00000007250	TRA2A	56	80.864	Echinops_telfairi
ENSDARG00000007863	tra2a	90	76.753	ENSEASG00005022002	TRA2A	57	82.500	Equus_asinus_asinus
ENSDARG00000007863	tra2a	90	76.753	ENSECAG00000011508	TRA2A	57	82.500	Equus_caballus
ENSDARG00000007863	tra2a	90	75.735	ENSEEUG00000015674	TRA2A	57	80.745	Erinaceus_europaeus
ENSDARG00000007863	tra2a	81	78.571	ENSELUG00000005846	tra2a	59	71.649	Esox_lucius
ENSDARG00000007863	tra2a	90	76.753	ENSFCAG00000005361	TRA2A	57	82.500	Felis_catus
ENSDARG00000007863	tra2a	86	77.043	ENSFALG00000009605	TRA2A	58	80.380	Ficedula_albicollis
ENSDARG00000007863	tra2a	90	75.824	ENSFDAG00000004949	TRA2A	57	81.481	Fukomys_damarensis
ENSDARG00000007863	tra2a	90	69.534	ENSGMOG00000013740	tra2a	56	76.923	Gadus_morhua
ENSDARG00000007863	tra2a	90	75.277	ENSGALG00000010973	TRA2A	55	80.380	Gallus_gallus
ENSDARG00000007863	tra2a	99	82.178	ENSGACG00000006878	tra2a	90	70.504	Gasterosteus_aculeatus
ENSDARG00000007863	tra2a	90	76.384	ENSGAGG00000005793	TRA2A	56	82.278	Gopherus_agassizii
ENSDARG00000007863	tra2a	90	76.471	ENSGGOG00000009053	TRA2A	83	77.515	Gorilla_gorilla
ENSDARG00000007863	tra2a	90	77.574	ENSHBUG00000018234	tra2a	55	81.657	Haplochromis_burtoni
ENSDARG00000007863	tra2a	90	76.471	ENSHGLG00000012168	TRA2A	57	81.988	Heterocephalus_glaber_female
ENSDARG00000007863	tra2a	90	76.471	ENSHGLG00100014577	TRA2A	57	81.988	Heterocephalus_glaber_male
ENSDARG00000007863	tra2a	50	79.798	ENSHCOG00000018058	-	88	79.798	Hippocampus_comes
ENSDARG00000007863	tra2a	50	79.798	ENSHCOG00000006314	tra2a	51	78.218	Hippocampus_comes
ENSDARG00000007863	tra2a	90	76.471	ENSSTOG00000012073	TRA2A	57	81.988	Ictidomys_tridecemlineatus
ENSDARG00000007863	tra2a	87	80.925	ENSJJAG00000022787	Tra2a	90	77.778	Jaculus_jaculus
ENSDARG00000007863	tra2a	99	76.847	ENSLBEG00000005297	tra2a	55	76.786	Labrus_bergylta
ENSDARG00000007863	tra2a	90	77.323	ENSLACG00000014765	TRA2A	57	79.630	Latimeria_chalumnae
ENSDARG00000007863	tra2a	99	81.592	ENSLOCG00000011615	-	90	78.810	Lepisosteus_oculatus
ENSDARG00000007863	tra2a	91	58.852	ENSLOCG00000009558	-	56	68.862	Lepisosteus_oculatus
ENSDARG00000007863	tra2a	90	76.190	ENSLAFG00000006598	TRA2A	57	81.481	Loxodonta_africana
ENSDARG00000007863	tra2a	90	76.471	ENSMFAG00000043211	TRA2A	83	77.515	Macaca_fascicularis
ENSDARG00000007863	tra2a	90	76.471	ENSMMUG00000006286	TRA2A	83	86.806	Macaca_mulatta
ENSDARG00000007863	tra2a	90	76.471	ENSMNEG00000040670	TRA2A	83	77.515	Macaca_nemestrina
ENSDARG00000007863	tra2a	90	76.471	ENSMLEG00000032154	TRA2A	83	77.515	Mandrillus_leucophaeus
ENSDARG00000007863	tra2a	72	81.633	ENSMAMG00000008575	tra2a	51	83.459	Mastacembelus_armatus
ENSDARG00000007863	tra2a	90	77.941	ENSMZEG00005009142	tra2a	55	82.840	Maylandia_zebra
ENSDARG00000007863	tra2a	86	76.834	ENSMGAG00000010514	TRA2A	58	80.380	Meleagris_gallopavo
ENSDARG00000007863	tra2a	90	76.471	ENSMICG00000043639	-	83	77.515	Microcebus_murinus
ENSDARG00000007863	tra2a	100	62.963	ENSMICG00000036849	-	57	67.470	Microcebus_murinus
ENSDARG00000007863	tra2a	93	68.085	ENSMOCG00000006467	-	56	77.570	Microtus_ochrogaster
ENSDARG00000007863	tra2a	88	70.611	ENSMOCG00000010249	-	61	77.848	Microtus_ochrogaster
ENSDARG00000007863	tra2a	90	77.206	ENSMODG00000000807	TRA2A	57	81.988	Monodelphis_domestica
ENSDARG00000007863	tra2a	99	80.882	ENSMALG00000020875	tra2a	56	76.571	Monopterus_albus
ENSDARG00000007863	tra2a	87	80.925	ENSMUSG00000029817	Tra2a	90	77.206	Mus_musculus
ENSDARG00000007863	tra2a	87	80.925	MGP_PahariEiJ_G0022115	Tra2a	90	77.206	Mus_pahari
ENSDARG00000007863	tra2a	87	80.925	MGP_SPRETEiJ_G0029368	Tra2a	90	77.206	Mus_spretus
ENSDARG00000007863	tra2a	90	76.753	ENSMPUG00000013480	TRA2A	57	82.500	Mustela_putorius_furo
ENSDARG00000007863	tra2a	90	75.824	ENSMLUG00000013972	TRA2A	57	80.247	Myotis_lucifugus
ENSDARG00000007863	tra2a	90	77.407	ENSNGAG00000023805	Tra2a	90	77.407	Nannospalax_galili
ENSDARG00000007863	tra2a	65	79.845	ENSNBRG00000005992	tra2a	72	78.235	Neolamprologus_brichardi
ENSDARG00000007863	tra2a	65	59.690	ENSNLEG00000029659	-	82	69.718	Nomascus_leucogenys
ENSDARG00000007863	tra2a	90	76.471	ENSNLEG00000014794	TRA2A	83	77.515	Nomascus_leucogenys
ENSDARG00000007863	tra2a	90	77.206	ENSMEUG00000001202	TRA2A	57	81.481	Notamacropus_eugenii
ENSDARG00000007863	tra2a	90	75.368	ENSOPRG00000007606	TRA2A	57	82.609	Ochotona_princeps
ENSDARG00000007863	tra2a	90	76.471	ENSODEG00000008335	TRA2A	57	81.988	Octodon_degus
ENSDARG00000007863	tra2a	90	77.941	ENSONIG00000004503	tra2a	56	82.249	Oreochromis_niloticus
ENSDARG00000007863	tra2a	90	72.202	ENSOANG00000014202	TRA2A	58	74.850	Ornithorhynchus_anatinus
ENSDARG00000007863	tra2a	90	76.103	ENSOCUG00000024139	TRA2A	57	81.988	Oryctolagus_cuniculus
ENSDARG00000007863	tra2a	88	65.714	ENSORLG00000022191	tra2a	52	74.825	Oryzias_latipes
ENSDARG00000007863	tra2a	88	65.714	ENSORLG00020003490	tra2a	52	74.126	Oryzias_latipes_hni
ENSDARG00000007863	tra2a	88	65.714	ENSORLG00015015485	tra2a	52	73.427	Oryzias_latipes_hsok
ENSDARG00000007863	tra2a	88	66.286	ENSOMEG00000017864	tra2a	51	73.759	Oryzias_melastigma
ENSDARG00000007863	tra2a	87	73.446	ENSOGAG00000009733	TRA2A	57	81.988	Otolemur_garnettii
ENSDARG00000007863	tra2a	99	67.488	ENSOARG00000002323	-	62	79.878	Ovis_aries
ENSDARG00000007863	tra2a	90	77.122	ENSOARG00000013147	TRA2A	57	82.500	Ovis_aries
ENSDARG00000007863	tra2a	90	76.471	ENSPPAG00000034382	TRA2A	83	77.515	Pan_paniscus
ENSDARG00000007863	tra2a	90	76.753	ENSPPRG00000015216	TRA2A	57	82.500	Panthera_pardus
ENSDARG00000007863	tra2a	90	76.753	ENSPTIG00000021114	TRA2A	57	82.500	Panthera_tigris_altaica
ENSDARG00000007863	tra2a	90	76.471	ENSPTRG00000046098	-	57	81.988	Pan_troglodytes
ENSDARG00000007863	tra2a	91	76.727	ENSPTRG00000018988	TRA2A	83	77.515	Pan_troglodytes
ENSDARG00000007863	tra2a	90	76.471	ENSPANG00000014541	TRA2A	57	81.988	Papio_anubis
ENSDARG00000007863	tra2a	99	86.432	ENSPKIG00000012298	tra2a	90	82.022	Paramormyrops_kingsleyae
ENSDARG00000007863	tra2a	89	75.373	ENSPSIG00000014993	TRA2A	58	80.745	Pelodiscus_sinensis
ENSDARG00000007863	tra2a	87	80.925	ENSPEMG00000008564	-	90	77.491	Peromyscus_maniculatus_bairdii
ENSDARG00000007863	tra2a	73	65.517	ENSPMAG00000007947	tra2a	62	61.176	Petromyzon_marinus
ENSDARG00000007863	tra2a	90	77.206	ENSPCIG00000007917	TRA2A	57	82.609	Phascolarctos_cinereus
ENSDARG00000007863	tra2a	90	76.471	ENSPPYG00000017728	TRA2A	57	81.988	Pongo_abelii
ENSDARG00000007863	tra2a	90	76.557	ENSPCAG00000004148	TRA2A	58	81.481	Procavia_capensis
ENSDARG00000007863	tra2a	90	61.710	ENSPCOG00000020465	TRA2A	50	55.696	Propithecus_coquereli
ENSDARG00000007863	tra2a	90	75.824	ENSPVAG00000011298	TRA2A	57	80.864	Pteropus_vampyrus
ENSDARG00000007863	tra2a	72	80.405	ENSPNYG00000020134	tra2a	75	76.879	Pundamilia_nyererei
ENSDARG00000007863	tra2a	90	81.648	ENSPNAG00000000482	tra2a	55	89.759	Pygocentrus_nattereri
ENSDARG00000007863	tra2a	87	80.925	ENSRNOG00000009156	Tra2a	90	77.206	Rattus_norvegicus
ENSDARG00000007863	tra2a	76	80.132	ENSRBIG00000036805	TRA2A	62	84.167	Rhinopithecus_bieti
ENSDARG00000007863	tra2a	90	76.471	ENSRROG00000030758	TRA2A	83	77.515	Rhinopithecus_roxellana
ENSDARG00000007863	tra2a	90	76.471	ENSSBOG00000031562	TRA2A	83	77.515	Saimiri_boliviensis_boliviensis
ENSDARG00000007863	tra2a	88	77.358	ENSSHAG00000005727	TRA2A	57	82.609	Sarcophilus_harrisii
ENSDARG00000007863	tra2a	90	83.146	ENSSFOG00015014004	tra2a	90	83.146	Scleropages_formosus
ENSDARG00000007863	tra2a	94	73.145	ENSSMAG00000014242	tra2a	56	75.148	Scophthalmus_maximus
ENSDARG00000007863	tra2a	90	76.978	ENSSDUG00000005610	tra2a	56	78.857	Seriola_dumerili
ENSDARG00000007863	tra2a	65	80.620	ENSSLDG00000025577	tra2a	80	77.381	Seriola_lalandi_dorsalis
ENSDARG00000007863	tra2a	90	75.090	ENSSPUG00000006143	TRA2A	57	79.878	Sphenodon_punctatus
ENSDARG00000007863	tra2a	90	78.102	ENSSPAG00000004184	tra2a	56	81.871	Stegastes_partitus
ENSDARG00000007863	tra2a	90	76.753	ENSSSCG00000015387	TRA2A	57	82.500	Sus_scrofa
ENSDARG00000007863	tra2a	73	79.310	ENSTGUG00000002795	TRA2A	59	78.481	Taeniopygia_guttata
ENSDARG00000007863	tra2a	87	80.347	ENSTBEG00000013773	TRA2A	75	77.729	Tupaia_belangeri
ENSDARG00000007863	tra2a	90	76.384	ENSTTRG00000008922	TRA2A	56	81.875	Tursiops_truncatus
ENSDARG00000007863	tra2a	65	80.620	ENSUMAG00000001181	TRA2A	78	77.059	Ursus_maritimus
ENSDARG00000007863	tra2a	90	76.753	ENSVVUG00000001045	TRA2A	57	82.500	Vulpes_vulpes
ENSDARG00000007863	tra2a	87	72.832	ENSXETG00000007397	tra2a	59	73.099	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0048026	positive regulation of mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component