EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000007901 (Gene tree)
Gene ID: 393920
Gene Symbol: crnkl1
Alias: zgc:55327
Full Name: crooked neck pre-mRNA splicing factor 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 21351 bases
Position: chr20:49081967-49103317
Accession: ZDB-GENE-040426-694
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000100660	HAT	PF02184.16	1e-30	1	2
ENSDARP00000100660	HAT	PF02184.16	1e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000112689	-	2371	-	ENSDARP00000100660	753 (aa)	-	Q803R7

Gene Model

Click here to download ENSDARG00000007901's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000007901's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000007901	crnkl1	91	84.942	ENSG00000101343	CRNKL1	96	86.556	Homo_sapiens
ENSDARG00000007901	crnkl1	98	85.734	ENSAPOG00000009705	crnkl1	96	90.950	Acanthochromis_polyacanthus
ENSDARG00000007901	crnkl1	90	85.714	ENSAMEG00000000270	CRNKL1	80	87.160	Ailuropoda_melanoleuca
ENSDARG00000007901	crnkl1	93	87.840	ENSACIG00000015267	crnkl1	88	90.649	Amphilophus_citrinellus
ENSDARG00000007901	crnkl1	96	86.345	ENSAOCG00000021964	crnkl1	93	86.920	Amphiprion_ocellaris
ENSDARG00000007901	crnkl1	93	88.984	ENSAPEG00000015041	crnkl1	93	87.079	Amphiprion_percula
ENSDARG00000007901	crnkl1	93	87.571	ENSATEG00000001068	crnkl1	87	90.361	Anabas_testudineus
ENSDARG00000007901	crnkl1	88	85.224	ENSAPLG00000013105	CRNKL1	96	84.917	Anas_platyrhynchos
ENSDARG00000007901	crnkl1	90	87.408	ENSACAG00000005284	CRNKL1	97	88.537	Anolis_carolinensis
ENSDARG00000007901	crnkl1	84	86.349	ENSANAG00000024889	CRNKL1	99	86.349	Aotus_nancymaae
ENSDARG00000007901	crnkl1	95	86.685	ENSACLG00000010813	crnkl1	95	86.685	Astatotilapia_calliptera
ENSDARG00000007901	crnkl1	88	92.632	ENSAMXG00000018334	crnkl1	89	92.609	Astyanax_mexicanus
ENSDARG00000007901	crnkl1	91	85.320	ENSBTAG00000008472	CRNKL1	96	87.160	Bos_taurus
ENSDARG00000007901	crnkl1	85	63.764	WBGene00019762	M03F8.3	92	61.816	Caenorhabditis_elegans
ENSDARG00000007901	crnkl1	91	85.234	ENSCJAG00000005393	CRNKL1	96	86.858	Callithrix_jacchus
ENSDARG00000007901	crnkl1	90	85.714	ENSCAFG00000005333	CRNKL1	91	87.160	Canis_familiaris
ENSDARG00000007901	crnkl1	90	85.819	ENSCAFG00020027488	CRNKL1	96	87.160	Canis_lupus_dingo
ENSDARG00000007901	crnkl1	91	84.157	ENSCHIG00000013171	CRNKL1	96	85.952	Capra_hircus
ENSDARG00000007901	crnkl1	90	85.380	ENSTSYG00000004197	CRNKL1	96	86.556	Carlito_syrichta
ENSDARG00000007901	crnkl1	84	83.793	ENSCAPG00000010501	CRNKL1	96	85.210	Cavia_aperea
ENSDARG00000007901	crnkl1	90	84.795	ENSCPOG00000004418	CRNKL1	96	86.103	Cavia_porcellus
ENSDARG00000007901	crnkl1	91	85.380	ENSCCAG00000027037	CRNKL1	96	87.009	Cebus_capucinus
ENSDARG00000007901	crnkl1	91	85.088	ENSCATG00000034247	CRNKL1	96	86.707	Cercocebus_atys
ENSDARG00000007901	crnkl1	90	85.234	ENSCLAG00000013859	CRNKL1	96	86.556	Chinchilla_lanigera
ENSDARG00000007901	crnkl1	91	85.088	ENSCSAG00000011434	CRNKL1	96	86.707	Chlorocebus_sabaeus
ENSDARG00000007901	crnkl1	90	84.978	ENSCHOG00000006371	CRNKL1	81	86.405	Choloepus_hoffmanni
ENSDARG00000007901	crnkl1	91	87.153	ENSCPBG00000023501	CRNKL1	97	88.386	Chrysemys_picta_bellii
ENSDARG00000007901	crnkl1	88	68.524	ENSCING00000002709	-	97	68.477	Ciona_intestinalis
ENSDARG00000007901	crnkl1	91	85.088	ENSCANG00000038789	CRNKL1	96	86.707	Colobus_angolensis_palliatus
ENSDARG00000007901	crnkl1	90	85.380	ENSCGRG00001000687	-	96	86.707	Cricetulus_griseus_chok1gshd
ENSDARG00000007901	crnkl1	90	85.380	ENSCGRG00001001115	-	96	86.707	Cricetulus_griseus_chok1gshd
ENSDARG00000007901	crnkl1	90	85.380	ENSCGRG00000007854	Crnkl1	96	86.707	Cricetulus_griseus_crigri
ENSDARG00000007901	crnkl1	98	81.735	ENSCSEG00000005594	crnkl1	99	91.101	Cynoglossus_semilaevis
ENSDARG00000007901	crnkl1	89	91.154	ENSCVAG00000015172	crnkl1	95	86.275	Cyprinodon_variegatus
ENSDARG00000007901	crnkl1	91	84.884	ENSDNOG00000016226	CRNKL1	92	86.858	Dasypus_novemcinctus
ENSDARG00000007901	crnkl1	90	83.913	ENSDORG00000000394	-	96	85.180	Dipodomys_ordii
ENSDARG00000007901	crnkl1	88	80.480	ENSDORG00000023724	-	98	80.484	Dipodomys_ordii
ENSDARG00000007901	crnkl1	89	79.491	ENSDORG00000030174	-	98	79.487	Dipodomys_ordii
ENSDARG00000007901	crnkl1	88	68.452	FBgn0000377	crn	94	69.033	Drosophila_melanogaster
ENSDARG00000007901	crnkl1	91	74.415	ENSETEG00000003711	CRNKL1	81	75.529	Echinops_telfairi
ENSDARG00000007901	crnkl1	91	57.678	ENSEBUG00000013461	crnkl1	93	57.831	Eptatretus_burgeri
ENSDARG00000007901	crnkl1	90	85.944	ENSEASG00005002072	CRNKL1	96	87.160	Equus_asinus_asinus
ENSDARG00000007901	crnkl1	90	85.944	ENSECAG00000022215	CRNKL1	96	87.160	Equus_caballus
ENSDARG00000007901	crnkl1	90	82.916	ENSEEUG00000000413	CRNKL1	89	84.290	Erinaceus_europaeus
ENSDARG00000007901	crnkl1	89	91.330	ENSELUG00000015424	crnkl1	94	91.554	Esox_lucius
ENSDARG00000007901	crnkl1	90	85.819	ENSFCAG00000000714	CRNKL1	96	87.160	Felis_catus
ENSDARG00000007901	crnkl1	88	85.522	ENSFALG00000004611	CRNKL1	97	86.749	Ficedula_albicollis
ENSDARG00000007901	crnkl1	91	84.738	ENSFDAG00000000604	CRNKL1	96	86.707	Fukomys_damarensis
ENSDARG00000007901	crnkl1	90	89.660	ENSFHEG00000013163	crnkl1	86	90.799	Fundulus_heteroclitus
ENSDARG00000007901	crnkl1	89	88.939	ENSGMOG00000007609	crnkl1	92	89.006	Gadus_morhua
ENSDARG00000007901	crnkl1	90	85.673	ENSGALG00000008429	CRNKL1	97	86.878	Gallus_gallus
ENSDARG00000007901	crnkl1	95	86.732	ENSGAFG00000014249	crnkl1	94	86.872	Gambusia_affinis
ENSDARG00000007901	crnkl1	96	84.807	ENSGACG00000011852	crnkl1	95	84.874	Gasterosteus_aculeatus
ENSDARG00000007901	crnkl1	87	85.344	ENSGAGG00000021233	CRNKL1	96	87.246	Gopherus_agassizii
ENSDARG00000007901	crnkl1	91	84.942	ENSGGOG00000014176	CRNKL1	96	86.556	Gorilla_gorilla
ENSDARG00000007901	crnkl1	96	86.538	ENSHBUG00000005246	crnkl1	88	91.101	Haplochromis_burtoni
ENSDARG00000007901	crnkl1	91	85.380	ENSHGLG00000010856	CRNKL1	96	86.707	Heterocephalus_glaber_female
ENSDARG00000007901	crnkl1	91	85.380	ENSHGLG00100011521	CRNKL1	96	86.707	Heterocephalus_glaber_male
ENSDARG00000007901	crnkl1	89	88.024	ENSHCOG00000006420	crnkl1	95	87.934	Hippocampus_comes
ENSDARG00000007901	crnkl1	90	78.024	ENSIPUG00000006836	-	97	78.669	Ictalurus_punctatus
ENSDARG00000007901	crnkl1	84	74.016	ENSIPUG00000000315	-	99	74.016	Ictalurus_punctatus
ENSDARG00000007901	crnkl1	91	88.338	ENSIPUG00000006751	crnkl1	90	91.190	Ictalurus_punctatus
ENSDARG00000007901	crnkl1	90	85.526	ENSSTOG00000014747	CRNKL1	96	86.858	Ictidomys_tridecemlineatus
ENSDARG00000007901	crnkl1	90	83.286	ENSJJAG00000016926	Crnkl1	96	84.513	Jaculus_jaculus
ENSDARG00000007901	crnkl1	96	87.517	ENSKMAG00000003620	crnkl1	85	91.855	Kryptolebias_marmoratus
ENSDARG00000007901	crnkl1	89	72.849	ENSLBEG00000003543	crnkl1	92	71.004	Labrus_bergylta
ENSDARG00000007901	crnkl1	91	87.097	ENSLACG00000001129	CRNKL1	97	88.084	Latimeria_chalumnae
ENSDARG00000007901	crnkl1	88	91.429	ENSLOCG00000016889	crnkl1	92	91.403	Lepisosteus_oculatus
ENSDARG00000007901	crnkl1	90	84.526	ENSLAFG00000004512	CRNKL1	96	86.576	Loxodonta_africana
ENSDARG00000007901	crnkl1	91	85.088	ENSMFAG00000039893	CRNKL1	96	86.707	Macaca_fascicularis
ENSDARG00000007901	crnkl1	91	85.088	ENSMMUG00000007709	CRNKL1	96	86.707	Macaca_mulatta
ENSDARG00000007901	crnkl1	91	85.088	ENSMNEG00000037490	CRNKL1	96	86.707	Macaca_nemestrina
ENSDARG00000007901	crnkl1	91	85.088	ENSMLEG00000034885	CRNKL1	96	86.707	Mandrillus_leucophaeus
ENSDARG00000007901	crnkl1	90	90.399	ENSMAMG00000008757	crnkl1	87	91.403	Mastacembelus_armatus
ENSDARG00000007901	crnkl1	97	85.889	ENSMZEG00005022345	crnkl1	97	86.202	Maylandia_zebra
ENSDARG00000007901	crnkl1	90	85.401	ENSMGAG00000003452	CRNKL1	91	86.596	Meleagris_gallopavo
ENSDARG00000007901	crnkl1	90	85.234	ENSMAUG00000020764	Crnkl1	96	86.556	Mesocricetus_auratus
ENSDARG00000007901	crnkl1	90	85.526	ENSMICG00000006048	CRNKL1	96	86.858	Microcebus_murinus
ENSDARG00000007901	crnkl1	88	62.199	ENSMOCG00000004179	-	94	62.199	Microtus_ochrogaster
ENSDARG00000007901	crnkl1	90	77.730	ENSMOCG00000000681	-	96	78.783	Microtus_ochrogaster
ENSDARG00000007901	crnkl1	84	87.816	ENSMMOG00000017601	crnkl1	97	87.816	Mola_mola
ENSDARG00000007901	crnkl1	90	83.117	ENSMODG00000005961	-	96	84.203	Monodelphis_domestica
ENSDARG00000007901	crnkl1	91	79.913	ENSMODG00000010857	-	96	81.420	Monodelphis_domestica
ENSDARG00000007901	crnkl1	96	63.478	ENSMALG00000011211	crnkl1	87	66.267	Monopterus_albus
ENSDARG00000007901	crnkl1	91	85.234	MGP_CAROLIEiJ_G0024394	Crnkl1	96	86.707	Mus_caroli
ENSDARG00000007901	crnkl1	90	85.380	ENSMUSG00000001767	Crnkl1	96	86.707	Mus_musculus
ENSDARG00000007901	crnkl1	90	84.064	MGP_PahariEiJ_G0025838	Crnkl1	96	85.347	Mus_pahari
ENSDARG00000007901	crnkl1	90	85.380	MGP_SPRETEiJ_G0025312	Crnkl1	96	86.707	Mus_spretus
ENSDARG00000007901	crnkl1	90	85.819	ENSMPUG00000001226	CRNKL1	96	87.160	Mustela_putorius_furo
ENSDARG00000007901	crnkl1	90	85.147	ENSMLUG00000016513	CRNKL1	86	86.576	Myotis_lucifugus
ENSDARG00000007901	crnkl1	90	83.501	ENSNGAG00000023097	Crnkl1	96	84.741	Nannospalax_galili
ENSDARG00000007901	crnkl1	95	86.685	ENSNBRG00000007867	crnkl1	87	91.252	Neolamprologus_brichardi
ENSDARG00000007901	crnkl1	91	82.018	ENSNLEG00000009862	CRNKL1	96	83.535	Nomascus_leucogenys
ENSDARG00000007901	crnkl1	88	85.800	ENSMEUG00000012167	-	97	87.172	Notamacropus_eugenii
ENSDARG00000007901	crnkl1	91	80.584	ENSMEUG00000002361	-	96	81.599	Notamacropus_eugenii
ENSDARG00000007901	crnkl1	69	58.494	ENSOPRG00000009242	-	61	58.789	Ochotona_princeps
ENSDARG00000007901	crnkl1	90	85.088	ENSODEG00000012175	CRNKL1	96	86.405	Octodon_degus
ENSDARG00000007901	crnkl1	94	87.011	ENSONIG00000018728	crnkl1	87	91.403	Oreochromis_niloticus
ENSDARG00000007901	crnkl1	90	84.728	ENSOCUG00000015484	CRNKL1	80	86.596	Oryctolagus_cuniculus
ENSDARG00000007901	crnkl1	95	84.895	ENSORLG00000017240	crnkl1	94	84.615	Oryzias_latipes
ENSDARG00000007901	crnkl1	95	84.615	ENSORLG00020001742	crnkl1	94	84.615	Oryzias_latipes_hni
ENSDARG00000007901	crnkl1	95	84.755	ENSORLG00015019564	crnkl1	95	84.755	Oryzias_latipes_hsok
ENSDARG00000007901	crnkl1	95	85.594	ENSOMEG00000019895	crnkl1	89	89.894	Oryzias_melastigma
ENSDARG00000007901	crnkl1	90	85.380	ENSOGAG00000011544	CRNKL1	96	86.707	Otolemur_garnettii
ENSDARG00000007901	crnkl1	91	85.066	ENSOARG00000002150	CRNKL1	86	87.009	Ovis_aries
ENSDARG00000007901	crnkl1	90	83.800	ENSPPAG00000027847	CRNKL1	80	85.498	Pan_paniscus
ENSDARG00000007901	crnkl1	90	85.819	ENSPPRG00000001955	CRNKL1	96	87.160	Panthera_pardus
ENSDARG00000007901	crnkl1	90	85.819	ENSPTIG00000007393	CRNKL1	96	87.160	Panthera_tigris_altaica
ENSDARG00000007901	crnkl1	91	84.942	ENSPTRG00000030609	CRNKL1	96	86.556	Pan_troglodytes
ENSDARG00000007901	crnkl1	91	85.088	ENSPANG00000017420	CRNKL1	96	86.707	Papio_anubis
ENSDARG00000007901	crnkl1	94	83.149	ENSPKIG00000017093	crnkl1	94	82.873	Paramormyrops_kingsleyae
ENSDARG00000007901	crnkl1	90	85.191	ENSPSIG00000012705	CRNKL1	96	86.364	Pelodiscus_sinensis
ENSDARG00000007901	crnkl1	91	83.309	ENSPMGG00000006263	crnkl1	94	84.314	Periophthalmus_magnuspinnatus
ENSDARG00000007901	crnkl1	90	85.673	ENSPEMG00000000073	-	96	87.009	Peromyscus_maniculatus_bairdii
ENSDARG00000007901	crnkl1	91	79.710	ENSPMAG00000002250	crnkl1	96	81.777	Petromyzon_marinus
ENSDARG00000007901	crnkl1	90	85.380	ENSPCIG00000025825	CRNKL1	92	86.707	Phascolarctos_cinereus
ENSDARG00000007901	crnkl1	89	90.313	ENSPFOG00000005102	crnkl1	96	86.453	Poecilia_formosa
ENSDARG00000007901	crnkl1	89	90.313	ENSPLAG00000007288	crnkl1	90	86.134	Poecilia_latipinna
ENSDARG00000007901	crnkl1	89	90.462	ENSPMEG00000008865	crnkl1	97	86.732	Poecilia_mexicana
ENSDARG00000007901	crnkl1	89	90.855	ENSPREG00000012615	crnkl1	96	87.047	Poecilia_reticulata
ENSDARG00000007901	crnkl1	90	84.978	ENSPPYG00000010747	CRNKL1	78	86.707	Pongo_abelii
ENSDARG00000007901	crnkl1	90	80.707	ENSPCAG00000003296	CRNKL1	82	81.873	Procavia_capensis
ENSDARG00000007901	crnkl1	90	84.536	ENSPCOG00000017608	CRNKL1	80	85.952	Propithecus_coquereli
ENSDARG00000007901	crnkl1	90	85.714	ENSPVAG00000006207	CRNKL1	80	87.009	Pteropus_vampyrus
ENSDARG00000007901	crnkl1	95	86.546	ENSPNYG00000001977	crnkl1	95	86.546	Pundamilia_nyererei
ENSDARG00000007901	crnkl1	89	92.846	ENSPNAG00000001507	crnkl1	95	89.173	Pygocentrus_nattereri
ENSDARG00000007901	crnkl1	90	85.234	ENSRNOG00000040045	Crnkl1	96	86.556	Rattus_norvegicus
ENSDARG00000007901	crnkl1	90	85.380	ENSRNOG00000010587	Crnkl1	96	86.707	Rattus_norvegicus
ENSDARG00000007901	crnkl1	91	85.401	ENSRBIG00000031770	CRNKL1	96	86.707	Rhinopithecus_bieti
ENSDARG00000007901	crnkl1	91	85.401	ENSRROG00000040450	CRNKL1	96	86.707	Rhinopithecus_roxellana
ENSDARG00000007901	crnkl1	86	36.865	YLR117C	CLF1	98	36.880	Saccharomyces_cerevisiae
ENSDARG00000007901	crnkl1	91	85.234	ENSSBOG00000029672	CRNKL1	96	86.858	Saimiri_boliviensis_boliviensis
ENSDARG00000007901	crnkl1	88	69.697	ENSSHAG00000011199	CRNKL1	98	69.678	Sarcophilus_harrisii
ENSDARG00000007901	crnkl1	88	90.799	ENSSFOG00015000946	crnkl1	86	90.799	Scleropages_formosus
ENSDARG00000007901	crnkl1	92	88.841	ENSSMAG00000007933	crnkl1	86	90.964	Scophthalmus_maximus
ENSDARG00000007901	crnkl1	94	80.536	ENSSDUG00000012625	crnkl1	89	80.254	Seriola_dumerili
ENSDARG00000007901	crnkl1	96	86.145	ENSSLDG00000021413	crnkl1	86	91.704	Seriola_lalandi_dorsalis
ENSDARG00000007901	crnkl1	90	84.795	ENSSARG00000006443	CRNKL1	79	86.103	Sorex_araneus
ENSDARG00000007901	crnkl1	90	85.526	ENSSPUG00000005254	CRNKL1	97	86.576	Sphenodon_punctatus
ENSDARG00000007901	crnkl1	97	86.301	ENSSPAG00000016150	crnkl1	86	92.157	Stegastes_partitus
ENSDARG00000007901	crnkl1	91	85.320	ENSSSCG00000038587	CRNKL1	96	87.160	Sus_scrofa
ENSDARG00000007901	crnkl1	90	85.255	ENSTGUG00000007645	CRNKL1	95	86.446	Taeniopygia_guttata
ENSDARG00000007901	crnkl1	89	84.352	ENSTRUG00000015417	crnkl1	92	80.478	Takifugu_rubripes
ENSDARG00000007901	crnkl1	89	88.473	ENSTNIG00000010710	crnkl1	96	88.404	Tetraodon_nigroviridis
ENSDARG00000007901	crnkl1	83	84.320	ENSTBEG00000001304	CRNKL1	82	84.444	Tupaia_belangeri
ENSDARG00000007901	crnkl1	83	82.240	ENSTTRG00000000484	CRNKL1	81	82.381	Tursiops_truncatus
ENSDARG00000007901	crnkl1	90	85.819	ENSUAMG00000018586	CRNKL1	96	87.160	Ursus_americanus
ENSDARG00000007901	crnkl1	90	85.819	ENSUMAG00000024957	CRNKL1	97	86.667	Ursus_maritimus
ENSDARG00000007901	crnkl1	90	85.714	ENSVVUG00000012559	CRNKL1	79	87.160	Vulpes_vulpes
ENSDARG00000007901	crnkl1	90	85.337	ENSXETG00000009698	crnkl1	97	85.671	Xenopus_tropicalis
ENSDARG00000007901	crnkl1	89	89.435	ENSXCOG00000000824	crnkl1	96	85.576	Xiphophorus_couchianus
ENSDARG00000007901	crnkl1	89	90.611	ENSXMAG00000006896	crnkl1	96	86.667	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000974	Prp19 complex	21873635.	IBA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0071007	U2-type catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071014	post-mRNA release spliceosomal complex	21873635.	IBA	Component