EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000008032 (Gene tree)
Gene ID: 558581
Gene Symbol: sart3
Alias: earl grey|egy|p110|si:ch211-191d15.4|wu:fc51h03
Full Name: spliceosome associated factor 3%2C U4/U6 recycling protein
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 27516 bases
Position: chr5:20453874-20481389
Accession: ZDB-GENE-040724-10
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000004923	RRM_1	PF00076.22	5.4e-32	1	2
ENSDARP00000004923	RRM_1	PF00076.22	5.4e-32	2	2
ENSDARP00000106223	RRM_1	PF00076.22	5.6e-32	1	2
ENSDARP00000106223	RRM_1	PF00076.22	5.6e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000008402	-	4657	-	ENSDARP00000004923	951 (aa)	-	Q6ZM52
ENSDART00000124545	-	3020	XM_005165154	ENSDARP00000106223	951 (aa)	XP_005165211	B3DJT0

Gene Model

Click here to download ENSDARG00000008032's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000008032's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000008032	sart3	99	60.316	ENSG00000075856	SART3	95	69.811	Homo_sapiens
ENSDARG00000008032	sart3	100	70.231	ENSAPOG00000007242	sart3	100	69.843	Acanthochromis_polyacanthus
ENSDARG00000008032	sart3	97	62.110	ENSAMEG00000016374	SART3	90	62.361	Ailuropoda_melanoleuca
ENSDARG00000008032	sart3	100	71.488	ENSACIG00000016452	sart3	100	71.354	Amphilophus_citrinellus
ENSDARG00000008032	sart3	100	74.217	ENSAOCG00000015094	sart3	100	73.591	Amphiprion_ocellaris
ENSDARG00000008032	sart3	100	73.723	ENSAPEG00000023696	sart3	100	73.618	Amphiprion_percula
ENSDARG00000008032	sart3	93	74.299	ENSATEG00000009882	sart3	100	74.270	Anabas_testudineus
ENSDARG00000008032	sart3	93	57.079	ENSAPLG00000006205	SART3	97	68.619	Anas_platyrhynchos
ENSDARG00000008032	sart3	94	64.088	ENSACAG00000001176	SART3	90	64.184	Anolis_carolinensis
ENSDARG00000008032	sart3	99	60.169	ENSANAG00000025967	SART3	90	61.376	Aotus_nancymaae
ENSDARG00000008032	sart3	99	73.194	ENSACLG00000025832	sart3	99	73.795	Astatotilapia_calliptera
ENSDARG00000008032	sart3	100	80.084	ENSAMXG00000019143	sart3	98	80.189	Astyanax_mexicanus
ENSDARG00000008032	sart3	99	60.677	ENSBTAG00000031846	SART3	90	61.804	Bos_taurus
ENSDARG00000008032	sart3	99	60.485	ENSCJAG00000015330	SART3	91	61.709	Callithrix_jacchus
ENSDARG00000008032	sart3	99	61.930	ENSCAFG00000011352	SART3	80	62.806	Canis_familiaris
ENSDARG00000008032	sart3	99	61.824	ENSCAFG00020022271	SART3	90	62.695	Canis_lupus_dingo
ENSDARG00000008032	sart3	99	61.140	ENSCHIG00000021385	SART3	91	62.736	Capra_hircus
ENSDARG00000008032	sart3	97	60.884	ENSTSYG00000013923	SART3	90	61.538	Carlito_syrichta
ENSDARG00000008032	sart3	93	62.458	ENSCAPG00000013404	SART3	99	62.190	Cavia_aperea
ENSDARG00000008032	sart3	99	60.718	ENSCPOG00000010969	SART3	90	62.319	Cavia_porcellus
ENSDARG00000008032	sart3	99	60.274	ENSCCAG00000023667	SART3	90	61.487	Cebus_capucinus
ENSDARG00000008032	sart3	99	60.737	ENSCATG00000041537	SART3	91	61.973	Cercocebus_atys
ENSDARG00000008032	sart3	99	60.824	ENSCLAG00000011727	SART3	90	62.207	Chinchilla_lanigera
ENSDARG00000008032	sart3	99	60.316	ENSCSAG00000002880	SART3	90	61.530	Chlorocebus_sabaeus
ENSDARG00000008032	sart3	90	68.140	ENSCPBG00000006699	SART3	92	69.332	Chrysemys_picta_bellii
ENSDARG00000008032	sart3	94	39.317	ENSCING00000009762	-	98	39.313	Ciona_intestinalis
ENSDARG00000008032	sart3	99	60.485	ENSCANG00000000411	SART3	91	61.709	Colobus_angolensis_palliatus
ENSDARG00000008032	sart3	99	60.603	ENSCGRG00001020554	Sart3	90	62.141	Cricetulus_griseus_chok1gshd
ENSDARG00000008032	sart3	89	61.502	ENSCGRG00000005968	Sart3	100	61.268	Cricetulus_griseus_crigri
ENSDARG00000008032	sart3	71	76.053	ENSCSEG00000011951	sart3	82	76.316	Cynoglossus_semilaevis
ENSDARG00000008032	sart3	100	72.088	ENSCVAG00000022898	sart3	100	72.298	Cyprinodon_variegatus
ENSDARG00000008032	sart3	99	59.623	ENSDNOG00000019498	SART3	90	60.750	Dasypus_novemcinctus
ENSDARG00000008032	sart3	94	62.016	ENSDORG00000014360	Sart3	92	61.419	Dipodomys_ordii
ENSDARG00000008032	sart3	61	36.709	FBgn0014024	Rnp4F	53	36.709	Drosophila_melanogaster
ENSDARG00000008032	sart3	69	57.803	ENSETEG00000011292	SART3	77	57.803	Echinops_telfairi
ENSDARG00000008032	sart3	99	38.358	ENSEBUG00000005658	sart3	91	38.074	Eptatretus_burgeri
ENSDARG00000008032	sart3	99	61.053	ENSEASG00005014500	SART3	90	61.931	Equus_asinus_asinus
ENSDARG00000008032	sart3	99	60.737	ENSECAG00000000314	SART3	90	61.931	Equus_caballus
ENSDARG00000008032	sart3	99	54.352	ENSEEUG00000002954	SART3	85	58.462	Erinaceus_europaeus
ENSDARG00000008032	sart3	100	74.170	ENSELUG00000013025	sart3	100	73.859	Esox_lucius
ENSDARG00000008032	sart3	99	61.880	ENSFCAG00000014041	SART3	90	63.029	Felis_catus
ENSDARG00000008032	sart3	93	66.704	ENSFALG00000008894	SART3	100	66.367	Ficedula_albicollis
ENSDARG00000008032	sart3	94	61.846	ENSFDAG00000014878	SART3	90	61.650	Fukomys_damarensis
ENSDARG00000008032	sart3	100	71.862	ENSFHEG00000015715	sart3	100	71.862	Fundulus_heteroclitus
ENSDARG00000008032	sart3	94	69.677	ENSGMOG00000017859	sart3	98	69.900	Gadus_morhua
ENSDARG00000008032	sart3	97	66.345	ENSGALG00000039472	SART3	92	67.148	Gallus_gallus
ENSDARG00000008032	sart3	100	70.995	ENSGAFG00000018055	sart3	100	70.890	Gambusia_affinis
ENSDARG00000008032	sart3	96	72.410	ENSGACG00000008787	sart3	98	73.133	Gasterosteus_aculeatus
ENSDARG00000008032	sart3	94	67.893	ENSGAGG00000016519	SART3	95	67.925	Gopherus_agassizii
ENSDARG00000008032	sart3	99	60.211	ENSGGOG00000011562	SART3	90	61.487	Gorilla_gorilla
ENSDARG00000008032	sart3	99	72.908	ENSHBUG00000005247	sart3	99	73.717	Haplochromis_burtoni
ENSDARG00000008032	sart3	94	62.749	ENSHGLG00000011579	SART3	90	62.542	Heterocephalus_glaber_female
ENSDARG00000008032	sart3	94	60.532	ENSHGLG00100013263	SART3	90	60.312	Heterocephalus_glaber_male
ENSDARG00000008032	sart3	100	58.473	ENSHCOG00000009693	sart3	100	59.205	Hippocampus_comes
ENSDARG00000008032	sart3	100	77.068	ENSIPUG00000021151	sart3	100	77.173	Ictalurus_punctatus
ENSDARG00000008032	sart3	94	61.846	ENSSTOG00000002376	SART3	90	61.761	Ictidomys_tridecemlineatus
ENSDARG00000008032	sart3	94	61.632	ENSJJAG00000021869	Sart3	90	61.521	Jaculus_jaculus
ENSDARG00000008032	sart3	100	73.166	ENSKMAG00000016864	sart3	100	73.480	Kryptolebias_marmoratus
ENSDARG00000008032	sart3	100	71.668	ENSLBEG00000001263	sart3	100	71.249	Labrus_bergylta
ENSDARG00000008032	sart3	75	53.243	ENSLACG00000007414	SART3	94	53.360	Latimeria_chalumnae
ENSDARG00000008032	sart3	100	72.425	ENSLOCG00000004710	sart3	96	72.320	Lepisosteus_oculatus
ENSDARG00000008032	sart3	99	60.271	ENSLAFG00000007167	SART3	90	61.905	Loxodonta_africana
ENSDARG00000008032	sart3	99	60.632	ENSMFAG00000039887	SART3	91	61.863	Macaca_fascicularis
ENSDARG00000008032	sart3	99	60.632	ENSMMUG00000017124	SART3	91	61.863	Macaca_mulatta
ENSDARG00000008032	sart3	99	60.632	ENSMNEG00000011093	SART3	91	61.863	Macaca_nemestrina
ENSDARG00000008032	sart3	99	60.632	ENSMLEG00000034251	SART3	91	61.863	Mandrillus_leucophaeus
ENSDARG00000008032	sart3	100	74.214	ENSMAMG00000016195	sart3	100	74.004	Mastacembelus_armatus
ENSDARG00000008032	sart3	99	72.984	ENSMZEG00005015248	sart3	99	73.795	Maylandia_zebra
ENSDARG00000008032	sart3	93	68.386	ENSMGAG00000005746	SART3	100	68.161	Meleagris_gallopavo
ENSDARG00000008032	sart3	97	60.791	ENSMAUG00000012434	Sart3	90	61.436	Mesocricetus_auratus
ENSDARG00000008032	sart3	99	60.042	ENSMICG00000013052	SART3	90	61.581	Microcebus_murinus
ENSDARG00000008032	sart3	97	61.004	ENSMOCG00000004078	Sart3	90	61.657	Microtus_ochrogaster
ENSDARG00000008032	sart3	100	69.223	ENSMMOG00000017629	sart3	100	69.223	Mola_mola
ENSDARG00000008032	sart3	94	68.182	ENSMODG00000002859	SART3	91	67.778	Monodelphis_domestica
ENSDARG00000008032	sart3	99	72.689	ENSMALG00000014549	sart3	89	73.966	Monopterus_albus
ENSDARG00000008032	sart3	94	61.963	MGP_CAROLIEiJ_G0027580	Sart3	90	61.479	Mus_caroli
ENSDARG00000008032	sart3	94	61.369	ENSMUSG00000018974	Sart3	90	61.436	Mus_musculus
ENSDARG00000008032	sart3	94	61.301	MGP_PahariEiJ_G0024162	Sart3	90	60.817	Mus_pahari
ENSDARG00000008032	sart3	94	61.963	MGP_SPRETEiJ_G0028578	Sart3	90	61.479	Mus_spretus
ENSDARG00000008032	sart3	99	61.824	ENSMPUG00000003402	SART3	82	62.695	Mustela_putorius_furo
ENSDARG00000008032	sart3	97	62.047	ENSMLUG00000007906	SART3	90	62.362	Myotis_lucifugus
ENSDARG00000008032	sart3	94	62.624	ENSNGAG00000014773	Sart3	90	62.472	Nannospalax_galili
ENSDARG00000008032	sart3	94	74.362	ENSNBRG00000008526	sart3	98	74.320	Neolamprologus_brichardi
ENSDARG00000008032	sart3	99	60.632	ENSNLEG00000006767	SART3	91	62.195	Nomascus_leucogenys
ENSDARG00000008032	sart3	93	63.093	ENSMEUG00000006799	SART3	100	62.754	Notamacropus_eugenii
ENSDARG00000008032	sart3	99	59.244	ENSOPRG00000015817	SART3	90	60.465	Ochotona_princeps
ENSDARG00000008032	sart3	99	60.421	ENSODEG00000008547	SART3	90	62.000	Octodon_degus
ENSDARG00000008032	sart3	99	73.690	ENSONIG00000013413	sart3	99	74.109	Oreochromis_niloticus
ENSDARG00000008032	sart3	93	65.766	ENSOANG00000008794	SART3	100	65.843	Ornithorhynchus_anatinus
ENSDARG00000008032	sart3	98	60.256	ENSOCUG00000016285	SART3	90	60.870	Oryctolagus_cuniculus
ENSDARG00000008032	sart3	100	70.724	ENSORLG00000006895	sart3	94	72.464	Oryzias_latipes
ENSDARG00000008032	sart3	100	70.964	ENSORLG00020015473	sart3	94	72.241	Oryzias_latipes_hni
ENSDARG00000008032	sart3	100	70.094	ENSORLG00015003914	sart3	100	69.885	Oryzias_latipes_hsok
ENSDARG00000008032	sart3	100	70.239	ENSOMEG00000002174	sart3	94	72.111	Oryzias_melastigma
ENSDARG00000008032	sart3	97	61.762	ENSOGAG00000000932	SART3	90	62.237	Otolemur_garnettii
ENSDARG00000008032	sart3	99	59.833	ENSOARG00000018082	SART3	90	61.487	Ovis_aries
ENSDARG00000008032	sart3	99	60.632	ENSPPAG00000041812	SART3	91	62.195	Pan_paniscus
ENSDARG00000008032	sart3	99	61.774	ENSPPRG00000001579	SART3	90	62.918	Panthera_pardus
ENSDARG00000008032	sart3	99	61.880	ENSPTIG00000021928	SART3	90	63.029	Panthera_tigris_altaica
ENSDARG00000008032	sart3	99	60.421	ENSPTRG00000005404	SART3	91	61.973	Pan_troglodytes
ENSDARG00000008032	sart3	99	60.526	ENSPANG00000024915	SART3	91	61.752	Papio_anubis
ENSDARG00000008032	sart3	100	68.172	ENSPKIG00000025203	sart3	100	66.667	Paramormyrops_kingsleyae
ENSDARG00000008032	sart3	93	63.330	ENSPSIG00000002594	SART3	100	64.115	Pelodiscus_sinensis
ENSDARG00000008032	sart3	100	70.785	ENSPMGG00000018729	sart3	94	72.049	Periophthalmus_magnuspinnatus
ENSDARG00000008032	sart3	93	61.470	ENSPEMG00000020811	-	94	60.913	Peromyscus_maniculatus_bairdii
ENSDARG00000008032	sart3	94	68.004	ENSPCIG00000023889	SART3	91	68.444	Phascolarctos_cinereus
ENSDARG00000008032	sart3	100	72.147	ENSPFOG00000010290	sart3	100	71.937	Poecilia_formosa
ENSDARG00000008032	sart3	100	71.937	ENSPLAG00000002711	sart3	100	71.623	Poecilia_latipinna
ENSDARG00000008032	sart3	100	72.280	ENSPMEG00000000456	sart3	100	71.937	Poecilia_mexicana
ENSDARG00000008032	sart3	100	72.327	ENSPREG00000022086	sart3	100	71.983	Poecilia_reticulata
ENSDARG00000008032	sart3	99	59.979	ENSPPYG00000004919	SART3	90	61.504	Pongo_abelii
ENSDARG00000008032	sart3	99	52.361	ENSPCAG00000007505	SART3	84	56.465	Procavia_capensis
ENSDARG00000008032	sart3	99	54.906	ENSPCOG00000014016	SART3	89	56.160	Propithecus_coquereli
ENSDARG00000008032	sart3	94	59.844	ENSPVAG00000007442	SART3	90	59.354	Pteropus_vampyrus
ENSDARG00000008032	sart3	99	72.908	ENSPNYG00000015653	sart3	99	73.717	Pundamilia_nyererei
ENSDARG00000008032	sart3	100	79.372	ENSPNAG00000001851	sart3	100	79.372	Pygocentrus_nattereri
ENSDARG00000008032	sart3	94	61.784	ENSRNOG00000000702	Sart3	90	61.411	Rattus_norvegicus
ENSDARG00000008032	sart3	99	60.632	ENSRBIG00000034143	SART3	90	61.641	Rhinopithecus_bieti
ENSDARG00000008032	sart3	99	60.737	ENSRROG00000003629	SART3	90	61.752	Rhinopithecus_roxellana
ENSDARG00000008032	sart3	99	58.483	ENSSBOG00000033093	SART3	90	59.489	Saimiri_boliviensis_boliviensis
ENSDARG00000008032	sart3	93	68.049	ENSSHAG00000010864	SART3	100	67.825	Sarcophilus_harrisii
ENSDARG00000008032	sart3	100	72.880	ENSSFOG00015004012	sart3	97	72.642	Scleropages_formosus
ENSDARG00000008032	sart3	100	71.234	ENSSMAG00000014666	sart3	100	71.921	Scophthalmus_maximus
ENSDARG00000008032	sart3	100	74.055	ENSSDUG00000011664	sart3	100	72.025	Seriola_dumerili
ENSDARG00000008032	sart3	100	73.375	ENSSLDG00000024990	sart3	93	73.270	Seriola_lalandi_dorsalis
ENSDARG00000008032	sart3	82	66.393	ENSSARG00000005401	SART3	73	69.328	Sorex_araneus
ENSDARG00000008032	sart3	92	66.968	ENSSPUG00000009541	SART3	93	68.046	Sphenodon_punctatus
ENSDARG00000008032	sart3	100	73.270	ENSSPAG00000010658	sart3	100	73.270	Stegastes_partitus
ENSDARG00000008032	sart3	99	60.756	ENSSSCG00000009946	SART3	90	61.931	Sus_scrofa
ENSDARG00000008032	sart3	94	67.263	ENSTGUG00000006905	SART3	99	67.075	Taeniopygia_guttata
ENSDARG00000008032	sart3	100	70.483	ENSTRUG00000014173	sart3	100	71.113	Takifugu_rubripes
ENSDARG00000008032	sart3	94	71.317	ENSTNIG00000015867	sart3	99	71.205	Tetraodon_nigroviridis
ENSDARG00000008032	sart3	93	58.679	ENSTBEG00000008888	SART3	89	59.716	Tupaia_belangeri
ENSDARG00000008032	sart3	99	60.824	ENSTTRG00000003993	SART3	90	61.958	Tursiops_truncatus
ENSDARG00000008032	sart3	97	62.217	ENSUAMG00000023906	SART3	90	62.472	Ursus_americanus
ENSDARG00000008032	sart3	94	63.070	ENSUMAG00000005844	SART3	98	62.584	Ursus_maritimus
ENSDARG00000008032	sart3	54	61.404	ENSVPAG00000009997	-	51	75.472	Vicugna_pacos
ENSDARG00000008032	sart3	99	61.930	ENSVVUG00000008216	SART3	90	62.806	Vulpes_vulpes
ENSDARG00000008032	sart3	94	63.407	ENSXETG00000017645	sart3	96	63.676	Xenopus_tropicalis
ENSDARG00000008032	sart3	100	70.231	ENSXCOG00000017212	sart3	99	69.885	Xiphophorus_couchianus
ENSDARG00000008032	sart3	100	72.059	ENSXMAG00000018160	sart3	100	71.714	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	17416673.	IMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000387	spliceosomal snRNP assembly	17416673.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005691	U6atac snRNP	-	ISS	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006334	nucleosome assembly	-	ISS	Process
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	21873635.	IBA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0015030	Cajal body	-	ISS	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0017070	U6 snRNA binding	-	ISS	Function
GO:0030098	lymphocyte differentiation	18729230.	IMP	Process
GO:0031017	exocrine pancreas development	17416673.	IMP	Process
GO:0042393	histone binding	-	ISS	Function
GO:0048538	thymus development	18729230.	IMP	Process
GO:0061574	ASAP complex	21873635.	IBA	Component
GO:0071001	U4/U6 snRNP	-	ISS	Component
GO:1903586	positive regulation of histone deubiquitination	-	ISS	Process