EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000008097 (Gene tree)
Gene ID: 405835
Gene Symbol: srsf9
Alias: zgc:77449
Full Name: serine/arginine-rich splicing factor 9
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 10100 bases
Position: chr10:1686975-1697074
Accession: ZDB-GENE-040426-2397
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000002874	RRM_1	PF00076.22	1.7e-30	1	2
ENSDARP00000002874	RRM_1	PF00076.22	1.7e-30	2	2
ENSDARP00000110534	RRM_1	PF00076.22	1.7e-30	1	2
ENSDARP00000110534	RRM_1	PF00076.22	1.7e-30	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000125188	-	1243	-	ENSDARP00000110534	245 (aa)	-	F1QVC6
ENSDART00000002985	-	1423	-	ENSDARP00000002874	245 (aa)	-	F1QVC6
ENSDART00000135144	-	1062	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000008097's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG
dre05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000008097's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000008097	srsf9	73	43.158	ENSDARG00000105293	srsf4	52	48.333
ENSDARG00000008097	srsf9	73	70.950	ENSDARG00000017843	srsf1b	73	70.950
ENSDARG00000008097	srsf9	73	66.138	ENSDARG00000057691	srsf1a	94	66.298
ENSDARG00000008097	srsf9	78	37.915	ENSDARG00000016783	srsf6b	74	42.667
ENSDARG00000008097	srsf9	69	43.182	ENSDARG00000027734	srsf5b	60	40.223
ENSDARG00000008097	srsf9	69	40.437	ENSDARG00000029818	srsf5a	95	37.879

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000008097	srsf9	89	65.138	ENSG00000111786	SRSF9	90	70.673	Homo_sapiens
ENSDARG00000008097	srsf9	92	89.474	ENSAPOG00000013728	srsf9	100	89.474	Acanthochromis_polyacanthus
ENSDARG00000008097	srsf9	89	65.596	ENSAMEG00000013294	SRSF9	93	70.192	Ailuropoda_melanoleuca
ENSDARG00000008097	srsf9	92	79.295	ENSACIG00000015765	srsf9	96	80.488	Amphilophus_citrinellus
ENSDARG00000008097	srsf9	100	86.640	ENSAOCG00000002992	srsf9	100	87.449	Amphiprion_ocellaris
ENSDARG00000008097	srsf9	100	86.640	ENSAPEG00000011908	srsf9	100	87.449	Amphiprion_percula
ENSDARG00000008097	srsf9	90	89.640	ENSATEG00000019984	srsf9	100	88.664	Anabas_testudineus
ENSDARG00000008097	srsf9	88	64.352	ENSACAG00000002877	SRSF9	82	72.596	Anolis_carolinensis
ENSDARG00000008097	srsf9	89	69.725	ENSANAG00000035910	SRSF9	90	70.673	Aotus_nancymaae
ENSDARG00000008097	srsf9	92	76.652	ENSACLG00000015678	srsf9	96	77.236	Astatotilapia_calliptera
ENSDARG00000008097	srsf9	100	92.653	ENSAMXG00000032281	srsf9	100	91.429	Astyanax_mexicanus
ENSDARG00000008097	srsf9	85	66.029	ENSBTAG00000005584	-	90	70.673	Bos_taurus
ENSDARG00000008097	srsf9	89	64.679	ENSBTAG00000012792	SRSF9	90	70.192	Bos_taurus
ENSDARG00000008097	srsf9	89	65.138	ENSCJAG00000001187	SRSF9	90	70.673	Callithrix_jacchus
ENSDARG00000008097	srsf9	89	66.667	ENSCAFG00000010314	SRSF9	90	71.154	Canis_familiaris
ENSDARG00000008097	srsf9	89	66.667	ENSCAFG00020020612	SRSF9	90	71.154	Canis_lupus_dingo
ENSDARG00000008097	srsf9	89	64.679	ENSCHIG00000025274	SRSF9	90	70.192	Capra_hircus
ENSDARG00000008097	srsf9	89	60.274	ENSTSYG00000034124	-	88	55.392	Carlito_syrichta
ENSDARG00000008097	srsf9	91	60.360	ENSTSYG00000036169	-	88	56.522	Carlito_syrichta
ENSDARG00000008097	srsf9	91	54.955	ENSTSYG00000029305	-	87	50.725	Carlito_syrichta
ENSDARG00000008097	srsf9	89	66.667	ENSTSYG00000006848	-	90	71.154	Carlito_syrichta
ENSDARG00000008097	srsf9	89	65.138	ENSCPOG00000033486	SRSF9	90	70.673	Cavia_porcellus
ENSDARG00000008097	srsf9	89	65.138	ENSCCAG00000036053	SRSF9	90	70.673	Cebus_capucinus
ENSDARG00000008097	srsf9	89	65.138	ENSCATG00000021315	SRSF9	90	70.673	Cercocebus_atys
ENSDARG00000008097	srsf9	75	57.065	ENSCATG00000000421	-	89	54.545	Cercocebus_atys
ENSDARG00000008097	srsf9	89	65.138	ENSCLAG00000012289	SRSF9	90	70.673	Chinchilla_lanigera
ENSDARG00000008097	srsf9	89	65.138	ENSCSAG00000002257	SRSF9	90	70.673	Chlorocebus_sabaeus
ENSDARG00000008097	srsf9	64	65.409	ENSCHOG00000009241	SRSF9	93	69.872	Choloepus_hoffmanni
ENSDARG00000008097	srsf9	88	67.593	ENSCPBG00000011340	SRSF9	87	70.616	Chrysemys_picta_bellii
ENSDARG00000008097	srsf9	86	68.571	ENSCANG00000034161	SRSF9	86	69.849	Colobus_angolensis_palliatus
ENSDARG00000008097	srsf9	89	66.210	ENSCGRG00001021965	Srsf9	90	69.712	Cricetulus_griseus_chok1gshd
ENSDARG00000008097	srsf9	100	82.609	ENSCSEG00000015663	srsf9	100	83.333	Cynoglossus_semilaevis
ENSDARG00000008097	srsf9	100	80.972	ENSCVAG00000021417	srsf9	100	78.049	Cyprinodon_variegatus
ENSDARG00000008097	srsf9	89	65.138	ENSDNOG00000012598	SRSF9	90	70.673	Dasypus_novemcinctus
ENSDARG00000008097	srsf9	89	66.210	ENSDORG00000013162	Srsf9	90	70.192	Dipodomys_ordii
ENSDARG00000008097	srsf9	89	65.138	ENSEASG00005004727	SRSF9	90	70.673	Equus_asinus_asinus
ENSDARG00000008097	srsf9	89	65.138	ENSECAG00000009116	SRSF9	90	70.673	Equus_caballus
ENSDARG00000008097	srsf9	63	78.000	ENSEEUG00000011655	SRSF9	66	78.000	Erinaceus_europaeus
ENSDARG00000008097	srsf9	94	84.188	ENSELUG00000021669	srsf9	100	86.345	Esox_lucius
ENSDARG00000008097	srsf9	100	79.681	ENSELUG00000012644	SRSF9	100	78.295	Esox_lucius
ENSDARG00000008097	srsf9	89	66.667	ENSFCAG00000011011	SRSF9	90	71.154	Felis_catus
ENSDARG00000008097	srsf9	100	83.065	ENSFHEG00000020851	srsf9	98	80.162	Fundulus_heteroclitus
ENSDARG00000008097	srsf9	100	83.071	ENSGMOG00000007980	srsf9	100	82.283	Gadus_morhua
ENSDARG00000008097	srsf9	92	85.022	ENSGAFG00000009123	srsf9	97	88.095	Gambusia_affinis
ENSDARG00000008097	srsf9	90	84.416	ENSGACG00000016921	srsf9	100	80.859	Gasterosteus_aculeatus
ENSDARG00000008097	srsf9	88	67.130	ENSGAGG00000016015	SRSF9	87	70.142	Gopherus_agassizii
ENSDARG00000008097	srsf9	85	53.555	ENSGGOG00000027142	-	91	59.000	Gorilla_gorilla
ENSDARG00000008097	srsf9	92	76.652	ENSHBUG00000019320	srsf9	100	77.236	Haplochromis_burtoni
ENSDARG00000008097	srsf9	79	62.694	ENSHGLG00000003582	-	86	63.187	Heterocephalus_glaber_female
ENSDARG00000008097	srsf9	89	65.138	ENSHGLG00000014372	SRSF9	90	70.673	Heterocephalus_glaber_female
ENSDARG00000008097	srsf9	89	65.138	ENSHGLG00100013695	SRSF9	90	70.673	Heterocephalus_glaber_male
ENSDARG00000008097	srsf9	79	62.694	ENSHGLG00100015198	-	85	63.187	Heterocephalus_glaber_male
ENSDARG00000008097	srsf9	100	65.476	ENSHCOG00000017311	srsf9	100	59.127	Hippocampus_comes
ENSDARG00000008097	srsf9	100	91.837	ENSIPUG00000005511	srsf9	100	91.020	Ictalurus_punctatus
ENSDARG00000008097	srsf9	89	65.138	ENSSTOG00000007344	SRSF9	90	70.673	Ictidomys_tridecemlineatus
ENSDARG00000008097	srsf9	89	66.210	ENSJJAG00000013374	Srsf9	89	70.874	Jaculus_jaculus
ENSDARG00000008097	srsf9	90	83.408	ENSKMAG00000007113	srsf9	100	81.452	Kryptolebias_marmoratus
ENSDARG00000008097	srsf9	100	75.304	ENSLBEG00000017430	srsf9	100	80.524	Labrus_bergylta
ENSDARG00000008097	srsf9	89	69.406	ENSLACG00000018228	SRSF9	90	75.962	Latimeria_chalumnae
ENSDARG00000008097	srsf9	100	88.306	ENSLOCG00000004044	srsf9	98	85.425	Lepisosteus_oculatus
ENSDARG00000008097	srsf9	73	68.156	ENSLAFG00000006381	SRSF9	91	69.643	Loxodonta_africana
ENSDARG00000008097	srsf9	80	68.367	ENSMFAG00000039423	SRSF9	94	69.730	Macaca_fascicularis
ENSDARG00000008097	srsf9	75	58.696	ENSMMUG00000040941	-	87	56.989	Macaca_mulatta
ENSDARG00000008097	srsf9	84	63.285	ENSMMUG00000016494	SRSF9	68	68.293	Macaca_mulatta
ENSDARG00000008097	srsf9	89	65.138	ENSMNEG00000044129	SRSF9	90	70.673	Macaca_nemestrina
ENSDARG00000008097	srsf9	89	69.585	ENSMLEG00000041155	SRSF9	95	70.874	Mandrillus_leucophaeus
ENSDARG00000008097	srsf9	91	88.839	ENSMAMG00000011581	srsf9	100	87.854	Mastacembelus_armatus
ENSDARG00000008097	srsf9	92	76.652	ENSMZEG00005018422	srsf9	96	77.236	Maylandia_zebra
ENSDARG00000008097	srsf9	89	65.753	ENSMAUG00000011403	Srsf9	90	69.231	Mesocricetus_auratus
ENSDARG00000008097	srsf9	89	64.679	ENSMICG00000008674	SRSF9	90	70.192	Microcebus_murinus
ENSDARG00000008097	srsf9	84	67.150	ENSMOCG00000021163	Srsf9	90	70.192	Microtus_ochrogaster
ENSDARG00000008097	srsf9	90	88.000	ENSMMOG00000009349	srsf9	95	86.000	Mola_mola
ENSDARG00000008097	srsf9	86	68.571	ENSMODG00000003146	SRSF9	92	71.635	Monodelphis_domestica
ENSDARG00000008097	srsf9	90	86.878	ENSMALG00000011678	srsf9	100	87.045	Monopterus_albus
ENSDARG00000008097	srsf9	89	66.667	MGP_CAROLIEiJ_G0027622	Srsf9	90	70.192	Mus_caroli
ENSDARG00000008097	srsf9	89	66.667	ENSMUSG00000029538	Srsf9	90	70.192	Mus_musculus
ENSDARG00000008097	srsf9	89	66.667	MGP_SPRETEiJ_G0028620	Srsf9	90	70.192	Mus_spretus
ENSDARG00000008097	srsf9	89	66.063	ENSMPUG00000003193	SRSF9	90	70.476	Mustela_putorius_furo
ENSDARG00000008097	srsf9	89	64.091	ENSMLUG00000010346	SRSF9	90	69.524	Myotis_lucifugus
ENSDARG00000008097	srsf9	89	66.210	ENSNGAG00000012738	Srsf9	89	70.874	Nannospalax_galili
ENSDARG00000008097	srsf9	92	76.652	ENSNBRG00000003888	srsf9	100	77.236	Neolamprologus_brichardi
ENSDARG00000008097	srsf9	89	65.138	ENSNLEG00000015661	SRSF9	90	70.673	Nomascus_leucogenys
ENSDARG00000008097	srsf9	82	61.386	ENSNLEG00000033316	-	87	61.497	Nomascus_leucogenys
ENSDARG00000008097	srsf9	62	68.627	ENSMEUG00000004069	SRSF9	92	71.895	Notamacropus_eugenii
ENSDARG00000008097	srsf9	89	66.210	ENSOPRG00000004234	SRSF9	90	71.014	Ochotona_princeps
ENSDARG00000008097	srsf9	94	76.724	ENSONIG00000013974	srsf9	100	77.236	Oreochromis_niloticus
ENSDARG00000008097	srsf9	89	65.315	ENSOCUG00000024603	SRSF9	90	70.192	Oryctolagus_cuniculus
ENSDARG00000008097	srsf9	100	81.301	ENSORLG00000023709	srsf9	100	80.488	Oryzias_latipes
ENSDARG00000008097	srsf9	100	81.301	ENSORLG00020017678	srsf9	100	80.488	Oryzias_latipes_hni
ENSDARG00000008097	srsf9	100	81.301	ENSORLG00015004857	srsf9	100	80.488	Oryzias_latipes_hsok
ENSDARG00000008097	srsf9	100	81.301	ENSOMEG00000002601	srsf9	100	83.740	Oryzias_melastigma
ENSDARG00000008097	srsf9	89	65.138	ENSOGAG00000003852	SRSF9	90	70.673	Otolemur_garnettii
ENSDARG00000008097	srsf9	85	65.072	ENSOARG00000012402	SRSF9	79	69.892	Ovis_aries
ENSDARG00000008097	srsf9	86	63.981	ENSPPAG00000034420	SRSF9	82	70.000	Pan_paniscus
ENSDARG00000008097	srsf9	89	66.667	ENSPPRG00000001309	SRSF9	90	71.154	Panthera_pardus
ENSDARG00000008097	srsf9	68	63.690	ENSPTIG00000010327	SRSF9	67	69.872	Panthera_tigris_altaica
ENSDARG00000008097	srsf9	89	65.138	ENSPTRG00000005535	SRSF9	90	70.673	Pan_troglodytes
ENSDARG00000008097	srsf9	89	65.138	ENSPANG00000016072	SRSF9	90	70.673	Papio_anubis
ENSDARG00000008097	srsf9	100	83.065	ENSPKIG00000023787	srsf9	100	83.468	Paramormyrops_kingsleyae
ENSDARG00000008097	srsf9	86	91.905	ENSPKIG00000024851	SRSF9	96	85.081	Paramormyrops_kingsleyae
ENSDARG00000008097	srsf9	100	71.825	ENSPMGG00000016215	srsf9	100	67.451	Periophthalmus_magnuspinnatus
ENSDARG00000008097	srsf9	85	67.143	ENSPEMG00000016311	Srsf9	90	69.712	Peromyscus_maniculatus_bairdii
ENSDARG00000008097	srsf9	86	65.714	ENSPCIG00000025998	SRSF9	82	72.596	Phascolarctos_cinereus
ENSDARG00000008097	srsf9	85	85.581	ENSPFOG00000019792	srsf9	100	82.470	Poecilia_formosa
ENSDARG00000008097	srsf9	85	85.116	ENSPLAG00000022740	srsf9	100	82.072	Poecilia_latipinna
ENSDARG00000008097	srsf9	85	85.116	ENSPMEG00000008809	srsf9	100	82.072	Poecilia_mexicana
ENSDARG00000008097	srsf9	85	82.407	ENSPREG00000013165	srsf9	97	79.365	Poecilia_reticulata
ENSDARG00000008097	srsf9	85	65.072	ENSPPYG00000019910	-	90	69.712	Pongo_abelii
ENSDARG00000008097	srsf9	89	65.138	ENSPPYG00000005031	-	90	70.673	Pongo_abelii
ENSDARG00000008097	srsf9	89	62.385	ENSPPYG00000029896	-	90	67.788	Pongo_abelii
ENSDARG00000008097	srsf9	68	67.066	ENSPCAG00000013889	SRSF9	92	69.032	Procavia_capensis
ENSDARG00000008097	srsf9	89	64.679	ENSPCOG00000015115	SRSF9	90	70.192	Propithecus_coquereli
ENSDARG00000008097	srsf9	89	65.138	ENSPVAG00000002229	SRSF9	90	70.673	Pteropus_vampyrus
ENSDARG00000008097	srsf9	92	76.652	ENSPNYG00000008644	srsf9	100	77.236	Pundamilia_nyererei
ENSDARG00000008097	srsf9	100	90.612	ENSPNAG00000003588	srsf9	100	90.612	Pygocentrus_nattereri
ENSDARG00000008097	srsf9	89	67.580	ENSRNOG00000001163	Srsf9	90	70.673	Rattus_norvegicus
ENSDARG00000008097	srsf9	64	68.987	ENSRBIG00000042683	SRSF9	79	69.231	Rhinopithecus_bieti
ENSDARG00000008097	srsf9	84	59.709	ENSRROG00000041980	SRSF9	91	64.804	Rhinopithecus_roxellana
ENSDARG00000008097	srsf9	65	66.460	ENSSHAG00000005685	SRSF9	93	69.182	Sarcophilus_harrisii
ENSDARG00000008097	srsf9	100	83.871	ENSSFOG00015017303	srsf9	100	83.871	Scleropages_formosus
ENSDARG00000008097	srsf9	100	86.290	ENSSFOG00015002476	SRSF9	100	83.468	Scleropages_formosus
ENSDARG00000008097	srsf9	88	83.945	ENSSMAG00000002039	srsf9	82	86.124	Scophthalmus_maximus
ENSDARG00000008097	srsf9	90	88.393	ENSSDUG00000018908	srsf9	100	87.952	Seriola_dumerili
ENSDARG00000008097	srsf9	90	88.393	ENSSLDG00000012305	srsf9	100	87.952	Seriola_lalandi_dorsalis
ENSDARG00000008097	srsf9	68	63.690	ENSSARG00000003434	SRSF9	93	69.872	Sorex_araneus
ENSDARG00000008097	srsf9	88	65.116	ENSSPUG00000015680	SRSF9	86	69.194	Sphenodon_punctatus
ENSDARG00000008097	srsf9	100	84.677	ENSSPAG00000006285	srsf9	100	86.345	Stegastes_partitus
ENSDARG00000008097	srsf9	69	59.524	ENSSSCG00000038585	-	84	59.236	Sus_scrofa
ENSDARG00000008097	srsf9	89	65.138	ENSSSCG00000009906	SRSF9	90	70.673	Sus_scrofa
ENSDARG00000008097	srsf9	100	64.981	ENSTRUG00000012723	srsf9	100	59.144	Takifugu_rubripes
ENSDARG00000008097	srsf9	95	80.252	ENSTNIG00000000697	srsf9	96	77.731	Tetraodon_nigroviridis
ENSDARG00000008097	srsf9	84	68.116	ENSTBEG00000008499	SRSF9	95	69.898	Tupaia_belangeri
ENSDARG00000008097	srsf9	84	68.932	ENSTTRG00000000145	SRSF9	94	70.256	Tursiops_truncatus
ENSDARG00000008097	srsf9	89	65.138	ENSUAMG00000015527	SRSF9	90	70.673	Ursus_americanus
ENSDARG00000008097	srsf9	76	60.417	ENSUMAG00000006151	SRSF9	80	60.526	Ursus_maritimus
ENSDARG00000008097	srsf9	89	66.667	ENSVVUG00000021065	SRSF9	90	71.154	Vulpes_vulpes
ENSDARG00000008097	srsf9	89	62.727	ENSXETG00000026940	srsf9	88	65.403	Xenopus_tropicalis
ENSDARG00000008097	srsf9	87	87.850	ENSXMAG00000001438	srsf9	98	87.619	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process