EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000008188 (Gene tree)
Gene ID: 572785
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 10912 bases
Position: chr7:22809905-22820816
Accession: ZDB-GENE-030131-2492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000105365	KH_1	PF00013.29	4.3e-06	1	1
ENSDARP00000130303	KH_1	PF00013.29	5.3e-06	1	1
ENSDARP00000105365	zf-CCHC	PF00098.23	0.00066	1	1
ENSDARP00000130303	zf-CCHC	PF00098.23	0.0008	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000139321	-	428	-	-	- (aa)	-	-
ENSDART00000166900	-	2837	XM_009303075	ENSDARP00000130303	663 (aa)	XP_009301350	A0A0R4IBT0
ENSDART00000143455	-	403	-	ENSDARP00000116837	93 (aa)	-	E9QF75
ENSDART00000020212	-	2718	-	ENSDARP00000026464	165 (aa)	-	E9QHL8
ENSDART00000126037	-	2510	XM_021477588	ENSDARP00000105365	565 (aa)	XP_021333263	F1QP64

Gene Model

Click here to download ENSDARG00000008188's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000008188's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000008188	sf1	69	89.474	ENSAPOG00000012341	sf1	86	82.069	Acanthochromis_polyacanthus
ENSDARG00000008188	sf1	70	78.385	ENSAMEG00000017828	SF1	60	81.013	Ailuropoda_melanoleuca
ENSDARG00000008188	sf1	65	89.189	ENSACIG00000016514	sf1	88	78.846	Amphilophus_citrinellus
ENSDARG00000008188	sf1	69	89.474	ENSAOCG00000010934	sf1	86	84.111	Amphiprion_ocellaris
ENSDARG00000008188	sf1	69	89.474	ENSAPEG00000009498	sf1	86	84.111	Amphiprion_percula
ENSDARG00000008188	sf1	65	91.081	ENSATEG00000001894	sf1	85	83.042	Anabas_testudineus
ENSDARG00000008188	sf1	72	79.765	ENSANAG00000026664	-	94	81.390	Aotus_nancymaae
ENSDARG00000008188	sf1	85	65.517	ENSANAG00000022607	-	76	81.056	Aotus_nancymaae
ENSDARG00000008188	sf1	65	90.984	ENSACLG00000007633	sf1	84	84.771	Astatotilapia_calliptera
ENSDARG00000008188	sf1	66	94.164	ENSAMXG00000003630	sf1	61	89.394	Astyanax_mexicanus
ENSDARG00000008188	sf1	97	70.067	ENSBTAG00000001035	SF1	79	81.390	Bos_taurus
ENSDARG00000008188	sf1	72	78.788	ENSCJAG00000002780	SF1	79	81.390	Callithrix_jacchus
ENSDARG00000008188	sf1	72	78.788	ENSCAFG00000014239	SF1	62	81.390	Canis_familiaris
ENSDARG00000008188	sf1	72	78.788	ENSCAFG00020014381	SF1	79	81.390	Canis_lupus_dingo
ENSDARG00000008188	sf1	72	78.788	ENSCHIG00000025867	SF1	79	81.390	Capra_hircus
ENSDARG00000008188	sf1	70	78.230	ENSCAPG00000010762	SF1	69	80.867	Cavia_aperea
ENSDARG00000008188	sf1	70	78.385	ENSCPOG00000012290	SF1	72	80.867	Cavia_porcellus
ENSDARG00000008188	sf1	72	72.182	ENSCCAG00000023781	-	87	70.352	Cebus_capucinus
ENSDARG00000008188	sf1	90	80.095	ENSCCAG00000037881	SF1	94	81.390	Cebus_capucinus
ENSDARG00000008188	sf1	72	78.788	ENSCATG00000011564	SF1	91	82.474	Cercocebus_atys
ENSDARG00000008188	sf1	72	78.788	ENSCSAG00000007258	SF1	71	80.916	Chlorocebus_sabaeus
ENSDARG00000008188	sf1	66	72.750	ENSCHOG00000006008	SF1	78	69.544	Choloepus_hoffmanni
ENSDARG00000008188	sf1	73	85.952	ENSCPBG00000023763	SF1	50	88.021	Chrysemys_picta_bellii
ENSDARG00000008188	sf1	56	67.610	ENSCING00000005564	-	85	57.773	Ciona_intestinalis
ENSDARG00000008188	sf1	70	50.343	ENSCSAVG00000009055	-	63	67.300	Ciona_savignyi
ENSDARG00000008188	sf1	72	78.788	ENSCANG00000042201	SF1	92	82.474	Colobus_angolensis_palliatus
ENSDARG00000008188	sf1	72	79.021	ENSCGRG00001003677	Sf1	79	81.638	Cricetulus_griseus_chok1gshd
ENSDARG00000008188	sf1	70	78.469	ENSCGRG00000001708	Sf1	71	81.122	Cricetulus_griseus_crigri
ENSDARG00000008188	sf1	97	85.366	ENSCSEG00000014375	sf1	81	82.716	Cynoglossus_semilaevis
ENSDARG00000008188	sf1	65	92.329	ENSCVAG00000001670	sf1	81	90.789	Cyprinodon_variegatus
ENSDARG00000008188	sf1	72	78.788	ENSDNOG00000001282	SF1	71	80.916	Dasypus_novemcinctus
ENSDARG00000008188	sf1	72	78.788	ENSDORG00000016334	Sf1	79	81.390	Dipodomys_ordii
ENSDARG00000008188	sf1	87	49.011	ENSEBUG00000012728	sf1	59	58.161	Eptatretus_burgeri
ENSDARG00000008188	sf1	72	78.322	ENSEASG00005018272	SF1	71	80.407	Equus_asinus_asinus
ENSDARG00000008188	sf1	72	78.555	ENSECAG00000024544	SF1	71	80.662	Equus_caballus
ENSDARG00000008188	sf1	62	79.245	ENSEEUG00000001058	SF1	87	80.802	Erinaceus_europaeus
ENSDARG00000008188	sf1	68	86.318	ENSELUG00000013225	sf1	61	84.188	Esox_lucius
ENSDARG00000008188	sf1	72	78.788	ENSFCAG00000012231	SF1	77	68.121	Felis_catus
ENSDARG00000008188	sf1	70	78.230	ENSFDAG00000009833	SF1	69	80.867	Fukomys_damarensis
ENSDARG00000008188	sf1	97	80.763	ENSFHEG00000022656	sf1	70	83.227	Fundulus_heteroclitus
ENSDARG00000008188	sf1	81	83.766	ENSGMOG00000007469	sf1	62	94.152	Gadus_morhua
ENSDARG00000008188	sf1	90	84.298	ENSGAFG00000019284	sf1	93	78.235	Gambusia_affinis
ENSDARG00000008188	sf1	97	84.099	ENSGACG00000000826	sf1	67	89.147	Gasterosteus_aculeatus
ENSDARG00000008188	sf1	77	79.526	ENSGAGG00000021691	SF1	70	74.245	Gopherus_agassizii
ENSDARG00000008188	sf1	65	91.599	ENSHBUG00000011598	sf1	85	82.646	Haplochromis_burtoni
ENSDARG00000008188	sf1	72	78.788	ENSHGLG00000009541	SF1	70	81.390	Heterocephalus_glaber_female
ENSDARG00000008188	sf1	53	87.043	ENSHGLG00100008076	-	72	77.031	Heterocephalus_glaber_male
ENSDARG00000008188	sf1	72	68.610	ENSHGLG00100008255	-	76	73.990	Heterocephalus_glaber_male
ENSDARG00000008188	sf1	70	78.230	ENSHGLG00100013879	-	69	80.867	Heterocephalus_glaber_male
ENSDARG00000008188	sf1	67	89.351	ENSHCOG00000011388	sf1	84	82.187	Hippocampus_comes
ENSDARG00000008188	sf1	70	78.230	ENSSTOG00000009790	-	78	80.867	Ictidomys_tridecemlineatus
ENSDARG00000008188	sf1	74	71.495	ENSSTOG00000024353	-	69	72.539	Ictidomys_tridecemlineatus
ENSDARG00000008188	sf1	72	79.021	ENSJJAG00000011788	Sf1	79	81.638	Jaculus_jaculus
ENSDARG00000008188	sf1	68	90.331	ENSKMAG00000005854	sf1	68	90.331	Kryptolebias_marmoratus
ENSDARG00000008188	sf1	83	85.097	ENSLBEG00000019836	sf1	84	84.699	Labrus_bergylta
ENSDARG00000008188	sf1	71	81.220	ENSLACG00000018493	SF1	69	83.641	Latimeria_chalumnae
ENSDARG00000008188	sf1	64	93.425	ENSLOCG00000002130	sf1	75	84.025	Lepisosteus_oculatus
ENSDARG00000008188	sf1	97	74.144	ENSLAFG00000007201	SF1	66	81.934	Loxodonta_africana
ENSDARG00000008188	sf1	72	78.788	ENSMFAG00000033122	SF1	91	82.474	Macaca_fascicularis
ENSDARG00000008188	sf1	72	78.788	ENSMMUG00000022606	SF1	95	80.964	Macaca_mulatta
ENSDARG00000008188	sf1	72	78.788	ENSMNEG00000037901	SF1	91	82.474	Macaca_nemestrina
ENSDARG00000008188	sf1	72	77.156	ENSMLEG00000040706	SF1	91	81.250	Mandrillus_leucophaeus
ENSDARG00000008188	sf1	66	90.476	ENSMAMG00000001780	sf1	84	83.538	Mastacembelus_armatus
ENSDARG00000008188	sf1	65	91.599	ENSMZEG00005009196	sf1	85	82.646	Maylandia_zebra
ENSDARG00000008188	sf1	72	79.021	ENSMAUG00000014064	Sf1	70	81.638	Mesocricetus_auratus
ENSDARG00000008188	sf1	72	78.788	ENSMICG00000001202	SF1	94	81.188	Microcebus_murinus
ENSDARG00000008188	sf1	72	80.000	ENSMOCG00000022038	Sf1	70	81.638	Microtus_ochrogaster
ENSDARG00000008188	sf1	64	90.710	ENSMMOG00000020474	sf1	69	79.872	Mola_mola
ENSDARG00000008188	sf1	70	78.860	ENSMODG00000029407	SF1	84	81.472	Monodelphis_domestica
ENSDARG00000008188	sf1	65	89.730	ENSMALG00000020521	sf1	75	79.872	Monopterus_albus
ENSDARG00000008188	sf1	72	79.021	MGP_CAROLIEiJ_G0022607	Sf1	99	95.489	Mus_caroli
ENSDARG00000008188	sf1	72	79.021	ENSMUSG00000024949	Sf1	99	95.489	Mus_musculus
ENSDARG00000008188	sf1	72	79.021	MGP_PahariEiJ_G0014101	Sf1	99	95.489	Mus_pahari
ENSDARG00000008188	sf1	72	79.021	MGP_SPRETEiJ_G0023518	Sf1	99	95.489	Mus_spretus
ENSDARG00000008188	sf1	70	78.147	ENSMPUG00000012684	SF1	77	81.013	Mustela_putorius_furo
ENSDARG00000008188	sf1	76	75.442	ENSMLUG00000029800	-	68	77.419	Myotis_lucifugus
ENSDARG00000008188	sf1	70	78.147	ENSMLUG00000015217	-	77	81.013	Myotis_lucifugus
ENSDARG00000008188	sf1	72	79.021	ENSNGAG00000005550	Sf1	70	81.638	Nannospalax_galili
ENSDARG00000008188	sf1	64	89.344	ENSNBRG00000017606	sf1	87	80.668	Neolamprologus_brichardi
ENSDARG00000008188	sf1	72	78.788	ENSNLEG00000005236	-	92	82.474	Nomascus_leucogenys
ENSDARG00000008188	sf1	68	78.883	ENSMEUG00000013424	SF1	72	81.606	Notamacropus_eugenii
ENSDARG00000008188	sf1	62	77.867	ENSOPRG00000005008	SF1	69	81.089	Ochotona_princeps
ENSDARG00000008188	sf1	72	76.457	ENSODEG00000006102	-	63	78.908	Octodon_degus
ENSDARG00000008188	sf1	65	91.328	ENSONIG00000015728	sf1	85	82.474	Oreochromis_niloticus
ENSDARG00000008188	sf1	58	76.744	ENSOANG00000002909	SF1	79	78.261	Ornithorhynchus_anatinus
ENSDARG00000008188	sf1	70	78.385	ENSOCUG00000026486	SF1	62	81.013	Oryctolagus_cuniculus
ENSDARG00000008188	sf1	67	90.000	ENSORLG00000011853	sf1	68	80.258	Oryzias_latipes
ENSDARG00000008188	sf1	68	88.175	ENSORLG00020011834	sf1	68	79.661	Oryzias_latipes_hni
ENSDARG00000008188	sf1	65	89.757	ENSORLG00015012855	sf1	68	79.531	Oryzias_latipes_hsok
ENSDARG00000008188	sf1	67	88.947	ENSOMEG00000005210	sf1	86	81.629	Oryzias_melastigma
ENSDARG00000008188	sf1	72	78.788	ENSOGAG00000016196	SF1	62	81.390	Otolemur_garnettii
ENSDARG00000008188	sf1	72	78.788	ENSOARG00000009166	SF1	68	80.916	Ovis_aries
ENSDARG00000008188	sf1	71	77.962	ENSPPAG00000002799	-	94	80.605	Pan_paniscus
ENSDARG00000008188	sf1	70	78.230	ENSPPRG00000013566	SF1	77	81.649	Panthera_pardus
ENSDARG00000008188	sf1	70	78.251	ENSPTIG00000016141	SF1	70	80.916	Panthera_tigris_altaica
ENSDARG00000008188	sf1	73	78.947	ENSPTRG00000003846	SF1	92	82.474	Pan_troglodytes
ENSDARG00000008188	sf1	72	78.788	ENSPANG00000020754	SF1	91	82.474	Papio_anubis
ENSDARG00000008188	sf1	57	84.431	ENSPKIG00000012116	sf1	83	81.818	Paramormyrops_kingsleyae
ENSDARG00000008188	sf1	54	84.762	ENSPSIG00000003610	SF1	55	87.455	Pelodiscus_sinensis
ENSDARG00000008188	sf1	72	79.021	ENSPEMG00000010463	Sf1	70	81.638	Peromyscus_maniculatus_bairdii
ENSDARG00000008188	sf1	72	79.254	ENSPCIG00000018173	SF1	81	81.886	Phascolarctos_cinereus
ENSDARG00000008188	sf1	97	84.580	ENSPFOG00000013683	sf1	84	84.507	Poecilia_formosa
ENSDARG00000008188	sf1	95	85.739	ENSPLAG00000018076	sf1	87	83.803	Poecilia_latipinna
ENSDARG00000008188	sf1	97	84.580	ENSPMEG00000005726	sf1	88	84.507	Poecilia_mexicana
ENSDARG00000008188	sf1	97	85.129	ENSPREG00000004155	sf1	84	84.331	Poecilia_reticulata
ENSDARG00000008188	sf1	72	78.788	ENSPPYG00000003098	-	73	80.916	Pongo_abelii
ENSDARG00000008188	sf1	70	77.804	ENSPCAG00000013631	SF1	77	67.681	Procavia_capensis
ENSDARG00000008188	sf1	72	78.788	ENSPCOG00000027546	SF1	94	81.188	Propithecus_coquereli
ENSDARG00000008188	sf1	70	78.043	ENSPVAG00000016938	SF1	77	68.077	Pteropus_vampyrus
ENSDARG00000008188	sf1	65	91.599	ENSPNYG00000004673	sf1	84	83.595	Pundamilia_nyererei
ENSDARG00000008188	sf1	65	94.278	ENSPNAG00000013072	sf1	69	88.745	Pygocentrus_nattereri
ENSDARG00000008188	sf1	72	78.788	ENSRNOG00000021085	Sf1	79	81.638	Rattus_norvegicus
ENSDARG00000008188	sf1	72	78.788	ENSRBIG00000042818	SF1	92	82.474	Rhinopithecus_bieti
ENSDARG00000008188	sf1	72	77.156	ENSRROG00000045655	SF1	92	80.670	Rhinopithecus_roxellana
ENSDARG00000008188	sf1	60	38.983	YLR116W	MSL5	56	44.689	Saccharomyces_cerevisiae
ENSDARG00000008188	sf1	97	61.157	ENSSBOG00000022267	-	93	69.192	Saimiri_boliviensis_boliviensis
ENSDARG00000008188	sf1	80	77.106	ENSSHAG00000006841	SF1	72	83.679	Sarcophilus_harrisii
ENSDARG00000008188	sf1	68	90.722	ENSSFOG00015021978	sf1	68	83.512	Scleropages_formosus
ENSDARG00000008188	sf1	84	81.538	ENSSMAG00000007549	sf1	74	78.395	Scophthalmus_maximus
ENSDARG00000008188	sf1	66	90.501	ENSSDUG00000003903	sf1	86	82.918	Seriola_dumerili
ENSDARG00000008188	sf1	59	73.923	ENSSARG00000008180	SF1	75	76.531	Sorex_araneus
ENSDARG00000008188	sf1	76	71.124	ENSSPUG00000012907	SF1	63	86.053	Sphenodon_punctatus
ENSDARG00000008188	sf1	69	89.975	ENSSPAG00000019060	sf1	86	84.283	Stegastes_partitus
ENSDARG00000008188	sf1	72	78.788	ENSSSCG00000013021	SF1	79	81.390	Sus_scrofa
ENSDARG00000008188	sf1	68	76.961	ENSTNIG00000004820	sf1	76	75.735	Tetraodon_nigroviridis
ENSDARG00000008188	sf1	70	73.206	ENSTTRG00000008857	SF1	71	75.765	Tursiops_truncatus
ENSDARG00000008188	sf1	51	77.741	ENSUAMG00000011977	SF1	73	80.287	Ursus_americanus
ENSDARG00000008188	sf1	71	77.570	ENSUMAG00000007268	SF1	75	81.013	Ursus_maritimus
ENSDARG00000008188	sf1	72	78.788	ENSVVUG00000028585	SF1	71	80.916	Vulpes_vulpes
ENSDARG00000008188	sf1	96	72.117	ENSXETG00000008434	sf1	65	85.039	Xenopus_tropicalis
ENSDARG00000008188	sf1	79	81.504	ENSXCOG00000003704	sf1	72	88.564	Xiphophorus_couchianus
ENSDARG00000008188	sf1	97	84.885	ENSXMAG00000007822	sf1	84	84.859	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0008270	zinc ion binding	-	IEA	Function
GO:0045131	pre-mRNA branch point binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0060041	retina development in camera-type eye	15716491.	IMP	Process