EuRBPDB

Description

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000008454 (Gene tree)
Gene ID: 30702
Gene Symbol: cpeb1b
Alias: cepb1b|fd15c06|wu:fd15c06|zorba
Full Name: cytoplasmic polyadenylation element binding protein 1b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 10529
Position: chr7: 48240707-48251235
Accession: ZDB-GENE-990927-1
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000024062	-	663	-	ENSDARP00000028099	210 (aa)	-	A2CE68
ENSDART00000174024	-	965	-	-	- (aa)	-	-
ENSDART00000174145	-	763	-	-	- (aa)	-	-
ENSDART00000098904	-	2912	XM_021477394	ENSDARP00000089674	559 (aa)	XP_021333069	Q9YGX5

Gene Model

Click here to download ENSDARG00000008454's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre04114	Oocyte meiosis	KEGG
dre04914	Progesterone-mediated oocyte maturation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000008454's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000008454	cpeb1b	100	66.899	ENSG00000214575	CPEB1	100	69.293	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000900	translation repressor activity, mRNA regulatory element binding	21873635.	IBA	Function
GO:0000900	translation repressor activity, mRNA regulatory element binding	-	ISS	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	20103830.	IPI	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0003730	mRNA 3'-UTR binding	-	IEA	Function
GO:0005515	protein binding	27913641.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006417	regulation of translation	-	IEA	Process
GO:0008135	translation factor activity, RNA binding	21873635.	IBA	Function
GO:0032869	cellular response to insulin stimulus	-	ISS	Process
GO:0032991	protein-containing complex	27913641.	IPI	Component
GO:0032991	protein-containing complex	27913641.	ISO	Component
GO:0035925	mRNA 3'-UTR AU-rich region binding	-	ISS	Function
GO:0043005	neuron projection	21873635.	IBA	Component
GO:0043022	ribosome binding	21873635.	IBA	Function
GO:0045182	translation regulator activity	-	IEA	Function
GO:0045202	synapse	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0071230	cellular response to amino acid stimulus	-	ISS	Process
GO:0071456	cellular response to hypoxia	-	ISS	Process
GO:1900365	positive regulation of mRNA polyadenylation	-	ISS	Process
GO:1990124	messenger ribonucleoprotein complex	21873635.	IBA	Component
GO:2000766	negative regulation of cytoplasmic translation	21873635.	IBA	Process
GO:2000766	negative regulation of cytoplasmic translation	-	ISS	Process