EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000008906 (Gene tree)
Gene ID: 567583
Gene Symbol: si:ch211-241e1.5
Alias: fi43c02|wu:fi43c02
Full Name: si:ch211-241e1.5
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6368 bases
Position: chr2:935952-942319
Accession: ZDB-GENE-030131-6298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000120483	zf-C2H2	PF00096.26	1.3e-48	1	9
ENSDARP00000120483	zf-C2H2	PF00096.26	1.3e-48	2	9
ENSDARP00000120483	zf-C2H2	PF00096.26	1.3e-48	3	9
ENSDARP00000120483	zf-C2H2	PF00096.26	1.3e-48	4	9
ENSDARP00000120483	zf-C2H2	PF00096.26	1.3e-48	5	9
ENSDARP00000120483	zf-C2H2	PF00096.26	1.3e-48	6	9
ENSDARP00000120483	zf-C2H2	PF00096.26	1.3e-48	7	9
ENSDARP00000120483	zf-C2H2	PF00096.26	1.3e-48	8	9
ENSDARP00000120483	zf-C2H2	PF00096.26	1.3e-48	9	9
ENSDARP00000120483	zf-met	PF12874.7	0.00056	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000137477	-	1828	-	ENSDARP00000120483	542 (aa)	-	A8DZG6

Gene Model

Click here to download ENSDARG00000008906's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000008906's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000008906	si:ch211-241e1.5	97	45.665	ENSDARG00000074365	zgc:171901	99	55.556
ENSDARG00000008906	si:ch211-241e1.5	98	37.148	ENSDARG00000101134	CABZ01064859.2	99	37.291
ENSDARG00000008906	si:ch211-241e1.5	85	36.966	ENSDARG00000089598	si:cabz01054396.2	96	36.966
ENSDARG00000008906	si:ch211-241e1.5	95	35.000	ENSDARG00000071714	znf983	99	35.427
ENSDARG00000008906	si:ch211-241e1.5	93	35.056	ENSDARG00000098324	si:cabz01054394.6	99	36.093

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000008906	si:ch211-241e1.5	62	52.632	ENSKMAG00000014629	-	50	46.721	Kryptolebias_marmoratus
ENSDARG00000008906	si:ch211-241e1.5	94	36.029	ENSPMEG00000007573	zgc:113343	61	39.130	Poecilia_mexicana
ENSDARG00000008906	si:ch211-241e1.5	82	38.551	ENSPREG00000001514	zgc:113343	61	38.551	Poecilia_reticulata
ENSDARG00000008906	si:ch211-241e1.5	99	34.389	ENSXCOG00000017871	zgc:113343	79	34.389	Xiphophorus_couchianus
ENSDARG00000008906	si:ch211-241e1.5	88	36.579	ENSXMAG00000019923	zgc:113343	66	36.579	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component