EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000009484 (Gene tree)
Gene ID: 114428
Gene Symbol: arf1
Alias: wu:fb33e02|wu:fb78h01
Full Name: ADP-ribosylation factor 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 14291 bases
Position: chr2:3062737-3077027
Accession: ZDB-GENE-010724-5
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000102498	MMR_HSR1	PF01926.23	2.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000109319	-	5093	-	ENSDARP00000102498	180 (aa)	-	Q803D1

Gene Model

Click here to download ENSDARG00000009484's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000009484's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000009484	arf1	93	42.105	ENSDARG00000032056	arl6	92	42.105
ENSDARG00000009484	arf1	99	69.061	ENSDARG00000074210	ARF5	89	69.061
ENSDARG00000009484	arf1	100	95.580	ENSDARG00000036998	arf3b	100	95.580
ENSDARG00000009484	arf1	91	47.929	ENSDARG00000063223	arl14	84	47.929
ENSDARG00000009484	arf1	94	32.164	ENSDARG00000070318	arl8bb	92	32.164
ENSDARG00000009484	arf1	100	95.028	ENSDARG00000070539	arf3a	100	95.028
ENSDARG00000009484	arf1	91	48.780	ENSDARG00000069496	arl2	89	48.780
ENSDARG00000009484	arf1	94	44.118	ENSDARG00000036637	arl11	94	44.118
ENSDARG00000009484	arf1	100	96.133	ENSDARG00000014763	arf2a	100	96.133
ENSDARG00000009484	arf1	99	80.556	ENSDARG00000045989	arf4a	100	80.556
ENSDARG00000009484	arf1	96	33.333	ENSDARG00000057857	arfrp1	92	34.091
ENSDARG00000009484	arf1	96	44.767	ENSDARG00000071409	arl3	95	44.767
ENSDARG00000009484	arf1	87	45.513	ENSDARG00000015404	arl3l2	88	46.667
ENSDARG00000009484	arf1	91	43.529	ENSDARG00000099918	arl4aa	83	44.578
ENSDARG00000009484	arf1	92	41.279	ENSDARG00000045074	arl4d	86	41.279
ENSDARG00000009484	arf1	100	96.685	ENSDARG00000056582	arf2b	100	96.685
ENSDARG00000009484	arf1	100	45.161	ENSDARG00000111106	arl3l1	99	45.161
ENSDARG00000009484	arf1	97	49.714	ENSDARG00000094709	arl8	98	49.714
ENSDARG00000009484	arf1	98	31.579	ENSDARG00000012763	arl13b	73	31.579
ENSDARG00000009484	arf1	96	47.191	ENSDARG00000032708	arl4cb	91	47.191
ENSDARG00000009484	arf1	73	30.137	ENSDARG00000056479	rab1bb	70	30.137
ENSDARG00000009484	arf1	99	82.778	ENSDARG00000070472	arf5	100	82.778
ENSDARG00000009484	arf1	99	32.778	ENSDARG00000006915	arl8ba	97	32.778
ENSDARG00000009484	arf1	100	56.906	ENSDARG00000101680	arl1	100	57.895
ENSDARG00000009484	arf1	98	49.153	ENSDARG00000018627	arl5a	99	49.153
ENSDARG00000009484	arf1	96	44.767	ENSDARG00000056794	zgc:110197	95	44.767
ENSDARG00000009484	arf1	96	47.191	ENSDARG00000057606	arl4ca	91	47.191
ENSDARG00000009484	arf1	99	82.778	ENSDARG00000113899	zgc:77650	100	82.778
ENSDARG00000009484	arf1	98	42.246	ENSDARG00000033182	arl4ab	93	42.246
ENSDARG00000009484	arf1	100	96.685	ENSDARG00000016393	arf2b	100	96.685
ENSDARG00000009484	arf1	98	50.568	ENSDARG00000035719	arl5c	98	50.568

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000009484	arf1	100	93.923	ENSACIG00000012192	-	100	93.923	Amphilophus_citrinellus
ENSDARG00000009484	arf1	84	92.763	ENSAOCG00000001275	-	88	92.763	Amphiprion_ocellaris
ENSDARG00000009484	arf1	100	92.818	ENSAPEG00000016909	-	100	92.818	Amphiprion_percula
ENSDARG00000009484	arf1	100	93.923	ENSATEG00000003174	-	100	93.923	Anabas_testudineus
ENSDARG00000009484	arf1	100	92.818	ENSACLG00000004123	-	100	92.818	Astatotilapia_calliptera
ENSDARG00000009484	arf1	100	99.444	ENSAMXG00000019845	arf1	100	99.444	Astyanax_mexicanus
ENSDARG00000009484	arf1	100	92.818	ENSCVAG00000013374	-	100	92.818	Cyprinodon_variegatus
ENSDARG00000009484	arf1	100	98.333	ENSELUG00000022533	arf1	79	98.333	Esox_lucius
ENSDARG00000009484	arf1	100	92.265	ENSFHEG00000005859	-	100	92.265	Fundulus_heteroclitus
ENSDARG00000009484	arf1	96	90.173	ENSGMOG00000000429	arf1	95	90.173	Gadus_morhua
ENSDARG00000009484	arf1	100	92.818	ENSGAFG00000018151	-	100	92.818	Gambusia_affinis
ENSDARG00000009484	arf1	100	84.444	ENSGACG00000014195	-	97	84.444	Gasterosteus_aculeatus
ENSDARG00000009484	arf1	100	92.818	ENSHBUG00000002636	-	100	92.818	Haplochromis_burtoni
ENSDARG00000009484	arf1	100	98.333	ENSIPUG00000006311	arf1	100	98.333	Ictalurus_punctatus
ENSDARG00000009484	arf1	100	93.370	ENSKMAG00000018315	-	100	93.370	Kryptolebias_marmoratus
ENSDARG00000009484	arf1	99	90.503	ENSLBEG00000001998	arf1	100	90.503	Labrus_bergylta
ENSDARG00000009484	arf1	100	87.845	ENSLBEG00000023263	-	100	87.845	Labrus_bergylta
ENSDARG00000009484	arf1	100	93.370	ENSMAMG00000001553	-	100	93.370	Mastacembelus_armatus
ENSDARG00000009484	arf1	100	92.818	ENSMZEG00005022594	-	100	92.818	Maylandia_zebra
ENSDARG00000009484	arf1	100	94.475	ENSMALG00000004269	-	100	94.475	Monopterus_albus
ENSDARG00000009484	arf1	100	92.818	ENSNBRG00000016455	-	100	92.818	Neolamprologus_brichardi
ENSDARG00000009484	arf1	100	92.818	ENSONIG00000001286	-	100	92.818	Oreochromis_niloticus
ENSDARG00000009484	arf1	100	93.923	ENSORLG00000023270	-	100	93.923	Oryzias_latipes
ENSDARG00000009484	arf1	100	93.370	ENSORLG00020006712	-	100	93.370	Oryzias_latipes_hni
ENSDARG00000009484	arf1	100	93.923	ENSORLG00015019836	-	100	93.923	Oryzias_latipes_hsok
ENSDARG00000009484	arf1	100	93.923	ENSOMEG00000023784	-	100	93.923	Oryzias_melastigma
ENSDARG00000009484	arf1	100	91.111	ENSPMGG00000014174	arf1	100	91.111	Periophthalmus_magnuspinnatus
ENSDARG00000009484	arf1	100	93.889	ENSPMAG00000002035	arf1	100	93.889	Petromyzon_marinus
ENSDARG00000009484	arf1	100	92.818	ENSPFOG00000014787	-	100	92.818	Poecilia_formosa
ENSDARG00000009484	arf1	100	92.818	ENSPLAG00000001041	-	100	92.818	Poecilia_latipinna
ENSDARG00000009484	arf1	100	92.818	ENSPMEG00000024077	-	100	92.818	Poecilia_mexicana
ENSDARG00000009484	arf1	100	92.818	ENSPREG00000009009	-	100	92.818	Poecilia_reticulata
ENSDARG00000009484	arf1	100	92.818	ENSPNYG00000009472	-	100	92.818	Pundamilia_nyererei
ENSDARG00000009484	arf1	96	98.256	ENSPNAG00000000098	arf1	95	98.256	Pygocentrus_nattereri
ENSDARG00000009484	arf1	98	77.966	YDL137W	-	96	77.966	Saccharomyces_cerevisiae
ENSDARG00000009484	arf1	99	77.222	YDL192W	-	99	77.222	Saccharomyces_cerevisiae
ENSDARG00000009484	arf1	100	86.667	ENSSMAG00000006125	-	100	86.667	Scophthalmus_maximus
ENSDARG00000009484	arf1	100	93.370	ENSSDUG00000017356	-	100	93.370	Seriola_dumerili
ENSDARG00000009484	arf1	100	93.370	ENSSLDG00000008504	-	100	93.370	Seriola_lalandi_dorsalis
ENSDARG00000009484	arf1	100	93.923	ENSSPAG00000011431	-	100	93.923	Stegastes_partitus
ENSDARG00000009484	arf1	100	95.028	ENSTRUG00000019870	-	100	95.028	Takifugu_rubripes
ENSDARG00000009484	arf1	100	93.923	ENSTNIG00000011685	-	100	93.923	Tetraodon_nigroviridis
ENSDARG00000009484	arf1	100	92.818	ENSXCOG00000016687	-	98	92.818	Xiphophorus_couchianus
ENSDARG00000009484	arf1	100	92.818	ENSXMAG00000009193	-	100	92.818	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005794	Golgi apparatus	21873635.	IBA	Component
GO:0005886	plasma membrane	21873635.	IBA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006893	Golgi to plasma membrane transport	21873635.	IBA	Process
GO:0016192	vesicle-mediated transport	21873635.	IBA	Process
GO:0060872	semicircular canal development	19320994.	IGI	Process
GO:0060872	semicircular canal development	19320994.	IMP	Process