EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000009585 (Gene tree)
Gene ID: 404041
Gene Symbol: papola
Alias: papolb|si:ch211-199l3.6|wu:fc43b06|wu:fp01g10|zgc:109706
Full Name: poly(A) polymerase alpha
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 25358 bases
Position: chr20:4712776-4738133
Accession: ZDB-GENE-030131-3507
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000053857	PAP_RNA-bind	PF04926.15	1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000124899	-	570	-	-	- (aa)	-	-
ENSDART00000152155	-	639	-	ENSDARP00000126606	107 (aa)	-	R4GDQ1
ENSDART00000050201	-	1559	-	ENSDARP00000050200	283 (aa)	-	F1QJP5
ENSDART00000152559	-	710	-	ENSDARP00000126748	189 (aa)	-	R4GE35
ENSDART00000053858	-	3471	XM_005160349	ENSDARP00000053857	723 (aa)	XP_005160406	Q5SNY2
ENSDART00000125620	-	1610	-	ENSDARP00000106710	449 (aa)	-	Q5SNY3

Gene Model

Click here to download ENSDARG00000009585's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000009585's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000009585	papola	69	77.046	ENSDARG00000012141	papolg	98	59.592

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000009585	papola	100	69.867	ENSG00000090060	PAPOLA	94	93.158	Homo_sapiens
ENSDARG00000009585	papola	99	69.536	ENSAMEG00000014142	PAPOLA	99	70.439	Ailuropoda_melanoleuca
ENSDARG00000009585	papola	99	69.839	ENSAPLG00000006645	PAPOLA	99	70.390	Anas_platyrhynchos
ENSDARG00000009585	papola	98	70.082	ENSACAG00000013474	PAPOLA	99	74.811	Anolis_carolinensis
ENSDARG00000009585	papola	74	80.187	ENSANAG00000027941	-	98	80.187	Aotus_nancymaae
ENSDARG00000009585	papola	100	69.867	ENSANAG00000018274	PAPOLA	99	84.615	Aotus_nancymaae
ENSDARG00000009585	papola	100	78.099	ENSAMXG00000018141	papola	100	89.228	Astyanax_mexicanus
ENSDARG00000009585	papola	100	70.799	ENSBTAG00000004054	PAPOLA	100	71.074	Bos_taurus
ENSDARG00000009585	papola	100	71.154	ENSCJAG00000006512	PAPOLA	99	84.615	Callithrix_jacchus
ENSDARG00000009585	papola	100	68.449	ENSCAFG00000017783	PAPOLA	100	70.159	Canis_familiaris
ENSDARG00000009585	papola	100	71.488	ENSCAFG00020011550	PAPOLA	96	85.185	Canis_lupus_dingo
ENSDARG00000009585	papola	100	70.667	ENSCHIG00000025004	-	99	75.000	Capra_hircus
ENSDARG00000009585	papola	99	70.816	ENSTSYG00000012384	PAPOLA	99	71.294	Carlito_syrichta
ENSDARG00000009585	papola	100	67.906	ENSCPOG00000002648	PAPOLA	100	68.091	Cavia_porcellus
ENSDARG00000009585	papola	100	69.867	ENSCCAG00000025120	PAPOLA	97	85.688	Cebus_capucinus
ENSDARG00000009585	papola	99	70.937	ENSCATG00000018815	PAPOLA	99	85.688	Cercocebus_atys
ENSDARG00000009585	papola	100	71.350	ENSCLAG00000016342	PAPOLA	100	71.562	Chinchilla_lanigera
ENSDARG00000009585	papola	100	68.840	ENSCSAG00000010516	PAPOLA	100	70.439	Chlorocebus_sabaeus
ENSDARG00000009585	papola	71	66.667	ENSCHOG00000001115	PAPOLA	72	66.667	Choloepus_hoffmanni
ENSDARG00000009585	papola	100	69.426	ENSCPBG00000024125	PAPOLA	100	69.612	Chrysemys_picta_bellii
ENSDARG00000009585	papola	99	64.706	ENSCANG00000000159	PAPOLA	100	65.166	Colobus_angolensis_palliatus
ENSDARG00000009585	papola	99	61.446	ENSCGRG00001002732	-	93	68.033	Cricetulus_griseus_chok1gshd
ENSDARG00000009585	papola	100	70.937	ENSCGRG00001022693	-	100	70.937	Cricetulus_griseus_chok1gshd
ENSDARG00000009585	papola	100	64.512	ENSCGRG00001000229	-	97	71.111	Cricetulus_griseus_chok1gshd
ENSDARG00000009585	papola	100	62.347	ENSCGRG00000000257	-	100	62.347	Cricetulus_griseus_crigri
ENSDARG00000009585	papola	98	60.744	ENSCGRG00000001888	-	96	60.354	Cricetulus_griseus_crigri
ENSDARG00000009585	papola	99	70.816	ENSCGRG00000003664	-	100	70.816	Cricetulus_griseus_crigri
ENSDARG00000009585	papola	67	54.959	ENSCSEG00000001841	-	89	48.264	Cynoglossus_semilaevis
ENSDARG00000009585	papola	66	60.835	ENSDORG00000013415	-	100	60.843	Dipodomys_ordii
ENSDARG00000009585	papola	99	62.046	ENSETEG00000004889	PAPOLA	100	61.477	Echinops_telfairi
ENSDARG00000009585	papola	100	69.231	ENSELUG00000018972	papola	100	70.806	Esox_lucius
ENSDARG00000009585	papola	100	70.799	ENSFCAG00000006784	PAPOLA	100	71.212	Felis_catus
ENSDARG00000009585	papola	99	67.487	ENSFALG00000002547	PAPOLA	98	68.057	Ficedula_albicollis
ENSDARG00000009585	papola	99	71.508	ENSFDAG00000010370	PAPOLA	100	71.544	Fukomys_damarensis
ENSDARG00000009585	papola	72	67.837	ENSGMOG00000010209	papola	100	68.132	Gadus_morhua
ENSDARG00000009585	papola	100	70.053	ENSGALG00000033099	PAPOLA	100	70.604	Gallus_gallus
ENSDARG00000009585	papola	66	55.115	ENSGACG00000006142	-	99	55.115	Gasterosteus_aculeatus
ENSDARG00000009585	papola	89	72.808	ENSGAGG00000020500	PAPOLA	99	73.025	Gopherus_agassizii
ENSDARG00000009585	papola	100	69.867	ENSGGOG00000006287	PAPOLA	98	79.221	Gorilla_gorilla
ENSDARG00000009585	papola	100	71.350	ENSHGLG00000007909	-	100	71.829	Heterocephalus_glaber_female
ENSDARG00000009585	papola	93	75.214	ENSHGLG00000007467	-	100	57.473	Heterocephalus_glaber_female
ENSDARG00000009585	papola	99	63.624	ENSHGLG00000017457	-	99	64.130	Heterocephalus_glaber_female
ENSDARG00000009585	papola	100	71.212	ENSHGLG00100017273	PAPOLA	100	71.696	Heterocephalus_glaber_male
ENSDARG00000009585	papola	100	68.774	ENSIPUG00000005919	papola	100	68.774	Ictalurus_punctatus
ENSDARG00000009585	papola	100	70.799	ENSSTOG00000011471	PAPOLA	100	71.212	Ictidomys_tridecemlineatus
ENSDARG00000009585	papola	99	70.678	ENSJJAG00000024340	Papola	100	71.093	Jaculus_jaculus
ENSDARG00000009585	papola	99	67.571	ENSLACG00000018136	PAPOLA	99	67.571	Latimeria_chalumnae
ENSDARG00000009585	papola	99	66.439	ENSLOCG00000008632	papola	99	66.576	Lepisosteus_oculatus
ENSDARG00000009585	papola	99	70.121	ENSLAFG00000000946	PAPOLA	99	69.973	Loxodonta_africana
ENSDARG00000009585	papola	100	69.733	ENSMFAG00000001792	PAPOLA	99	84.587	Macaca_fascicularis
ENSDARG00000009585	papola	99	70.937	ENSMMUG00000018610	PAPOLA	100	71.350	Macaca_mulatta
ENSDARG00000009585	papola	99	70.937	ENSMNEG00000043747	PAPOLA	98	85.847	Macaca_nemestrina
ENSDARG00000009585	papola	100	69.733	ENSMLEG00000032066	PAPOLA	100	70.439	Mandrillus_leucophaeus
ENSDARG00000009585	papola	84	68.521	ENSMGAG00000013228	-	100	69.427	Meleagris_gallopavo
ENSDARG00000009585	papola	100	70.937	ENSMAUG00000017178	Papola	100	70.937	Mesocricetus_auratus
ENSDARG00000009585	papola	100	70.564	ENSMICG00000010347	PAPOLA	99	84.826	Microcebus_murinus
ENSDARG00000009585	papola	100	70.937	ENSMOCG00000021670	Papola	100	70.937	Microtus_ochrogaster
ENSDARG00000009585	papola	100	70.470	ENSMODG00000012887	-	100	70.950	Monodelphis_domestica
ENSDARG00000009585	papola	99	62.857	ENSMODG00000001969	-	99	62.978	Monodelphis_domestica
ENSDARG00000009585	papola	100	70.386	MGP_CAROLIEiJ_G0018093	Papola	100	70.523	Mus_caroli
ENSDARG00000009585	papola	100	70.799	ENSMUSG00000021111	Papola	100	70.937	Mus_musculus
ENSDARG00000009585	papola	100	70.799	MGP_PahariEiJ_G0029850	Papola	100	70.937	Mus_pahari
ENSDARG00000009585	papola	100	70.661	MGP_SPRETEiJ_G0018943	Papola	100	70.799	Mus_spretus
ENSDARG00000009585	papola	100	68.988	ENSMPUG00000003054	PAPOLA	100	70.479	Mustela_putorius_furo
ENSDARG00000009585	papola	100	70.628	ENSMLUG00000010922	PAPOLA	100	70.628	Myotis_lucifugus
ENSDARG00000009585	papola	100	70.523	ENSNGAG00000022172	Papola	100	71.074	Nannospalax_galili
ENSDARG00000009585	papola	99	67.258	ENSNLEG00000000625	PAPOLA	100	67.667	Nomascus_leucogenys
ENSDARG00000009585	papola	50	55.833	ENSMEUG00000007831	-	54	55.833	Notamacropus_eugenii
ENSDARG00000009585	papola	98	65.814	ENSOPRG00000007625	PAPOLA	100	67.168	Ochotona_princeps
ENSDARG00000009585	papola	68	54.767	ENSONIG00000001062	-	99	54.767	Oreochromis_niloticus
ENSDARG00000009585	papola	99	70.856	ENSOANG00000013812	PAPOLA	99	71.133	Ornithorhynchus_anatinus
ENSDARG00000009585	papola	99	68.901	ENSOCUG00000011531	PAPOLA	99	68.901	Oryctolagus_cuniculus
ENSDARG00000009585	papola	100	70.800	ENSOGAG00000004611	PAPOLA	100	70.800	Otolemur_garnettii
ENSDARG00000009585	papola	100	70.933	ENSOARG00000016579	-	100	70.933	Ovis_aries
ENSDARG00000009585	papola	100	69.867	ENSPPAG00000030505	PAPOLA	98	82.931	Pan_paniscus
ENSDARG00000009585	papola	100	69.758	ENSPPRG00000008616	PAPOLA	100	70.761	Panthera_pardus
ENSDARG00000009585	papola	99	69.636	ENSPTIG00000018852	PAPOLA	99	70.722	Panthera_tigris_altaica
ENSDARG00000009585	papola	100	69.867	ENSPTRG00000006704	PAPOLA	100	70.573	Pan_troglodytes
ENSDARG00000009585	papola	99	70.937	ENSPANG00000025582	PAPOLA	98	85.688	Papio_anubis
ENSDARG00000009585	papola	100	72.021	ENSPKIG00000014471	papola	100	72.727	Paramormyrops_kingsleyae
ENSDARG00000009585	papola	100	69.467	ENSPSIG00000014157	PAPOLA	87	70.439	Pelodiscus_sinensis
ENSDARG00000009585	papola	100	70.523	ENSPEMG00000000043	Papola	100	70.937	Peromyscus_maniculatus_bairdii
ENSDARG00000009585	papola	100	69.730	ENSPCIG00000013234	PAPOLA	100	70.479	Phascolarctos_cinereus
ENSDARG00000009585	papola	100	67.145	ENSPPYG00000006128	PAPOLA	100	68.708	Pongo_abelii
ENSDARG00000009585	papola	89	68.182	ENSPCAG00000004199	PAPOLA	100	68.182	Procavia_capensis
ENSDARG00000009585	papola	99	68.005	ENSPCOG00000022117	PAPOLA	97	81.262	Propithecus_coquereli
ENSDARG00000009585	papola	100	69.251	ENSPVAG00000013925	PAPOLA	100	70.385	Pteropus_vampyrus
ENSDARG00000009585	papola	100	79.201	ENSPNAG00000010467	papola	100	79.339	Pygocentrus_nattereri
ENSDARG00000009585	papola	100	69.355	ENSRNOG00000004827	Papola	100	69.231	Rattus_norvegicus
ENSDARG00000009585	papola	99	70.442	ENSRBIG00000038490	PAPOLA	98	84.701	Rhinopithecus_bieti
ENSDARG00000009585	papola	100	69.612	ENSRROG00000025545	PAPOLA	100	70.439	Rhinopithecus_roxellana
ENSDARG00000009585	papola	99	70.799	ENSSBOG00000024061	PAPOLA	97	85.526	Saimiri_boliviensis_boliviensis
ENSDARG00000009585	papola	99	70.350	ENSSHAG00000015211	PAPOLA	99	70.833	Sarcophilus_harrisii
ENSDARG00000009585	papola	100	72.162	ENSSFOG00015004431	papola	97	87.918	Scleropages_formosus
ENSDARG00000009585	papola	69	57.916	ENSSDUG00000018247	-	74	57.916	Seriola_dumerili
ENSDARG00000009585	papola	100	69.067	ENSSPUG00000005835	PAPOLA	100	70.107	Sphenodon_punctatus
ENSDARG00000009585	papola	100	70.937	ENSSSCG00000002505	-	100	71.350	Sus_scrofa
ENSDARG00000009585	papola	99	69.733	ENSTGUG00000012687	PAPOLA	99	70.336	Taeniopygia_guttata
ENSDARG00000009585	papola	65	79.348	ENSTBEG00000000194	PAPOLA	74	79.348	Tupaia_belangeri
ENSDARG00000009585	papola	76	77.734	ENSTTRG00000005717	PAPOLA	74	77.734	Tursiops_truncatus
ENSDARG00000009585	papola	58	88.333	ENSUAMG00000025737	PAPOLA	98	88.333	Ursus_americanus
ENSDARG00000009585	papola	99	70.580	ENSVPAG00000006464	PAPOLA	100	70.580	Vicugna_pacos
ENSDARG00000009585	papola	100	70.799	ENSVVUG00000028340	PAPOLA	100	71.212	Vulpes_vulpes
ENSDARG00000009585	papola	100	68.302	ENSXETG00000013949	papola	100	68.302	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004652	polynucleotide adenylyltransferase activity	21873635.	IBA	Function
GO:0004652	polynucleotide adenylyltransferase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0016779	nucleotidyltransferase activity	-	IEA	Function
GO:0031123	RNA 3'-end processing	-	IEA	Process
GO:0043631	RNA polyadenylation	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function