EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000009806 (Gene tree)
Gene ID: 393717
Gene Symbol: smfn
Alias: zgc:73191
Full Name: small fragment nuclease
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 11815 bases
Position: chr10:39893439-39905253
Accession: ZDB-GENE-040426-1709
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000009619	RNase_T	PF00929.24	1e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000003435	-	1248	-	ENSDARP00000009619	259 (aa)	-	F1QNX9

Gene Model

Click here to download ENSDARG00000009806's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000009806's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000009806	smfn	73	79.365	ENSG00000076043	REXO2	99	79.570	Homo_sapiens
ENSDARG00000009806	smfn	85	72.072	ENSAMEG00000013263	REXO2	93	72.973	Ailuropoda_melanoleuca
ENSDARG00000009806	smfn	71	80.541	ENSACIG00000023553	smfn	100	80.541	Amphilophus_citrinellus
ENSDARG00000009806	smfn	59	68.323	ENSAOCG00000011565	smfn	98	68.323	Amphiprion_ocellaris
ENSDARG00000009806	smfn	89	72.034	ENSAPEG00000012435	smfn	86	72.034	Amphiprion_percula
ENSDARG00000009806	smfn	74	80.412	ENSATEG00000015385	smfn	70	80.412	Anabas_testudineus
ENSDARG00000009806	smfn	73	77.202	ENSAPLG00000005045	REXO2	94	77.202	Anas_platyrhynchos
ENSDARG00000009806	smfn	70	71.429	ENSACAG00000011631	REXO2	85	71.429	Anolis_carolinensis
ENSDARG00000009806	smfn	85	72.072	ENSANAG00000020834	REXO2	93	72.973	Aotus_nancymaae
ENSDARG00000009806	smfn	74	80.208	ENSACLG00000024566	smfn	97	79.781	Astatotilapia_calliptera
ENSDARG00000009806	smfn	85	71.622	ENSBTAG00000005843	REXO2	93	72.523	Bos_taurus
ENSDARG00000009806	smfn	68	48.571	WBGene00007429	C08B6.8	88	55.072	Caenorhabditis_elegans
ENSDARG00000009806	smfn	85	71.171	ENSCJAG00000012434	REXO2	93	72.072	Callithrix_jacchus
ENSDARG00000009806	smfn	85	71.171	ENSCAFG00000013511	REXO2	93	72.072	Canis_familiaris
ENSDARG00000009806	smfn	85	72.072	ENSCAFG00020002513	REXO2	93	72.973	Canis_lupus_dingo
ENSDARG00000009806	smfn	85	71.622	ENSCHIG00000009264	REXO2	93	72.523	Capra_hircus
ENSDARG00000009806	smfn	85	72.072	ENSTSYG00000002237	REXO2	93	72.973	Carlito_syrichta
ENSDARG00000009806	smfn	73	68.394	ENSTSYG00000027948	-	99	69.430	Carlito_syrichta
ENSDARG00000009806	smfn	71	79.032	ENSCAPG00000006093	REXO2	99	80.108	Cavia_aperea
ENSDARG00000009806	smfn	85	72.523	ENSCPOG00000010548	REXO2	93	73.423	Cavia_porcellus
ENSDARG00000009806	smfn	85	72.072	ENSCCAG00000034979	REXO2	93	72.973	Cebus_capucinus
ENSDARG00000009806	smfn	78	75.248	ENSCATG00000015278	REXO2	93	72.523	Cercocebus_atys
ENSDARG00000009806	smfn	85	72.523	ENSCLAG00000011195	REXO2	93	73.423	Chinchilla_lanigera
ENSDARG00000009806	smfn	78	74.752	ENSCSAG00000002754	REXO2	93	72.072	Chlorocebus_sabaeus
ENSDARG00000009806	smfn	75	78.061	ENSCHOG00000000642	-	83	79.082	Choloepus_hoffmanni
ENSDARG00000009806	smfn	54	74.126	ENSCPBG00000009359	REXO2	99	74.126	Chrysemys_picta_bellii
ENSDARG00000009806	smfn	68	65.143	ENSCING00000009858	-	84	65.143	Ciona_intestinalis
ENSDARG00000009806	smfn	78	75.248	ENSCANG00000034756	REXO2	93	72.523	Colobus_angolensis_palliatus
ENSDARG00000009806	smfn	75	78.173	ENSCGRG00001013673	-	96	79.188	Cricetulus_griseus_chok1gshd
ENSDARG00000009806	smfn	86	71.556	ENSCGRG00001019814	-	92	72.444	Cricetulus_griseus_chok1gshd
ENSDARG00000009806	smfn	75	77.041	ENSCGRG00001010922	-	96	78.061	Cricetulus_griseus_chok1gshd
ENSDARG00000009806	smfn	86	71.556	ENSCGRG00000006235	Rexo2	92	72.444	Cricetulus_griseus_crigri
ENSDARG00000009806	smfn	73	85.492	ENSCSEG00000007214	smfn	77	80.282	Cynoglossus_semilaevis
ENSDARG00000009806	smfn	70	76.757	ENSCVAG00000012008	smfn	100	76.757	Cyprinodon_variegatus
ENSDARG00000009806	smfn	77	76.382	ENSDNOG00000046533	REXO2	91	76.382	Dasypus_novemcinctus
ENSDARG00000009806	smfn	84	72.727	ENSDORG00000011255	Rexo2	92	73.636	Dipodomys_ordii
ENSDARG00000009806	smfn	73	62.176	ENSDORG00000025142	-	85	62.755	Dipodomys_ordii
ENSDARG00000009806	smfn	67	52.874	FBgn0039115	CG10214	82	52.874	Drosophila_melanogaster
ENSDARG00000009806	smfn	84	69.369	ENSEBUG00000013964	REXO2	75	69.369	Eptatretus_burgeri
ENSDARG00000009806	smfn	80	75.120	ENSEASG00005006674	REXO2	88	76.077	Equus_asinus_asinus
ENSDARG00000009806	smfn	80	75.120	ENSECAG00000005988	REXO2	88	76.077	Equus_caballus
ENSDARG00000009806	smfn	91	70.079	ENSELUG00000020072	smfn	88	70.079	Esox_lucius
ENSDARG00000009806	smfn	85	71.622	ENSFCAG00000018632	REXO2	93	72.523	Felis_catus
ENSDARG00000009806	smfn	69	78.142	ENSFALG00000010044	REXO2	91	78.142	Ficedula_albicollis
ENSDARG00000009806	smfn	85	72.523	ENSFDAG00000011764	REXO2	93	73.423	Fukomys_damarensis
ENSDARG00000009806	smfn	74	82.199	ENSGMOG00000006370	smfn	99	82.199	Gadus_morhua
ENSDARG00000009806	smfn	75	79.082	ENSGALG00000035980	REXO2	91	74.882	Gallus_gallus
ENSDARG00000009806	smfn	87	72.609	ENSGAFG00000015349	smfn	81	72.609	Gambusia_affinis
ENSDARG00000009806	smfn	76	80.500	ENSGACG00000020096	smfn	99	80.500	Gasterosteus_aculeatus
ENSDARG00000009806	smfn	74	78.866	ENSGAGG00000021126	REXO2	84	78.866	Gopherus_agassizii
ENSDARG00000009806	smfn	78	75.248	ENSGGOG00000023267	REXO2	93	72.523	Gorilla_gorilla
ENSDARG00000009806	smfn	75	79.592	ENSHGLG00000013556	REXO2	83	80.612	Heterocephalus_glaber_female
ENSDARG00000009806	smfn	75	80.102	ENSHGLG00100005257	REXO2	83	81.122	Heterocephalus_glaber_male
ENSDARG00000009806	smfn	68	76.271	ENSHCOG00000007122	smfn	98	76.271	Hippocampus_comes
ENSDARG00000009806	smfn	98	66.045	ENSIPUG00000020440	rexo2	97	66.045	Ictalurus_punctatus
ENSDARG00000009806	smfn	85	72.646	ENSSTOG00000012465	REXO2	93	73.423	Ictidomys_tridecemlineatus
ENSDARG00000009806	smfn	80	55.502	ENSJJAG00000022605	-	85	55.502	Jaculus_jaculus
ENSDARG00000009806	smfn	85	72.072	ENSJJAG00000013710	-	93	72.973	Jaculus_jaculus
ENSDARG00000009806	smfn	79	77.778	ENSKMAG00000016795	smfn	74	77.778	Kryptolebias_marmoratus
ENSDARG00000009806	smfn	70	79.348	ENSLBEG00000006021	smfn	97	79.348	Labrus_bergylta
ENSDARG00000009806	smfn	81	68.807	ENSLACG00000018623	REXO2	90	68.807	Latimeria_chalumnae
ENSDARG00000009806	smfn	75	82.741	ENSLOCG00000002389	smfn	94	82.741	Lepisosteus_oculatus
ENSDARG00000009806	smfn	75	79.592	ENSLAFG00000012451	REXO2	83	80.612	Loxodonta_africana
ENSDARG00000009806	smfn	78	75.248	ENSMFAG00000041155	REXO2	93	72.523	Macaca_fascicularis
ENSDARG00000009806	smfn	78	75.248	ENSMMUG00000012269	REXO2	93	72.523	Macaca_mulatta
ENSDARG00000009806	smfn	78	75.248	ENSMNEG00000033379	REXO2	93	72.523	Macaca_nemestrina
ENSDARG00000009806	smfn	78	75.248	ENSMLEG00000036571	REXO2	93	72.523	Mandrillus_leucophaeus
ENSDARG00000009806	smfn	98	65.891	ENSMAMG00000021209	smfn	89	65.891	Mastacembelus_armatus
ENSDARG00000009806	smfn	74	80.208	ENSMZEG00005020730	REXO2	74	80.208	Maylandia_zebra
ENSDARG00000009806	smfn	74	80.208	ENSMZEG00005023224	-	74	80.208	Maylandia_zebra
ENSDARG00000009806	smfn	61	76.543	ENSMGAG00000003026	REXO2	99	76.543	Meleagris_gallopavo
ENSDARG00000009806	smfn	86	71.556	ENSMAUG00000014576	Rexo2	92	72.444	Mesocricetus_auratus
ENSDARG00000009806	smfn	85	72.072	ENSMICG00000010094	REXO2	93	72.973	Microcebus_murinus
ENSDARG00000009806	smfn	75	80.612	ENSMOCG00000009016	Rexo2	83	80.612	Microtus_ochrogaster
ENSDARG00000009806	smfn	99	62.692	ENSMMOG00000006430	smfn	93	62.692	Mola_mola
ENSDARG00000009806	smfn	81	75.117	ENSMODG00000013913	REXO2	90	75.117	Monodelphis_domestica
ENSDARG00000009806	smfn	76	77.833	ENSMALG00000018130	smfn	58	77.833	Monopterus_albus
ENSDARG00000009806	smfn	73	80.105	MGP_CAROLIEiJ_G0032166	Rexo2	81	81.152	Mus_caroli
ENSDARG00000009806	smfn	73	80.105	ENSMUSG00000032026	Rexo2	81	81.152	Mus_musculus
ENSDARG00000009806	smfn	73	80.105	MGP_PahariEiJ_G0015034	Rexo2	81	81.152	Mus_pahari
ENSDARG00000009806	smfn	73	80.105	MGP_SPRETEiJ_G0033305	Rexo2	81	81.152	Mus_spretus
ENSDARG00000009806	smfn	85	72.072	ENSMPUG00000003947	REXO2	93	72.973	Mustela_putorius_furo
ENSDARG00000009806	smfn	85	71.171	ENSMLUG00000009030	REXO2	93	72.072	Myotis_lucifugus
ENSDARG00000009806	smfn	75	79.592	ENSNGAG00000008819	Rexo2	96	80.612	Nannospalax_galili
ENSDARG00000009806	smfn	71	81.522	ENSNBRG00000006529	smfn	98	81.522	Neolamprologus_brichardi
ENSDARG00000009806	smfn	78	75.248	ENSNLEG00000029745	REXO2	93	72.523	Nomascus_leucogenys
ENSDARG00000009806	smfn	81	74.648	ENSMEUG00000011558	REXO2	98	74.648	Notamacropus_eugenii
ENSDARG00000009806	smfn	50	75.000	ENSOPRG00000011076	REXO2	56	76.515	Ochotona_princeps
ENSDARG00000009806	smfn	71	79.032	ENSODEG00000009750	-	99	80.108	Octodon_degus
ENSDARG00000009806	smfn	73	63.298	ENSODEG00000016046	-	94	63.298	Octodon_degus
ENSDARG00000009806	smfn	82	75.587	ENSONIG00000001954	smfn	91	75.587	Oreochromis_niloticus
ENSDARG00000009806	smfn	79	74.396	ENSOANG00000001754	REXO2	94	71.875	Ornithorhynchus_anatinus
ENSDARG00000009806	smfn	80	75.598	ENSOCUG00000004274	REXO2	84	76.555	Oryctolagus_cuniculus
ENSDARG00000009806	smfn	73	83.246	ENSORLG00000005119	smfn	62	83.246	Oryzias_latipes
ENSDARG00000009806	smfn	73	83.770	ENSORLG00020010121	smfn	62	83.770	Oryzias_latipes_hni
ENSDARG00000009806	smfn	74	82.474	ENSORLG00015015699	smfn	62	83.333	Oryzias_latipes_hsok
ENSDARG00000009806	smfn	53	79.137	ENSOMEG00000008940	-	97	79.137	Oryzias_melastigma
ENSDARG00000009806	smfn	98	67.315	ENSOMEG00000016878	REXO2	91	67.315	Oryzias_melastigma
ENSDARG00000009806	smfn	85	72.072	ENSOGAG00000016860	REXO2	93	72.973	Otolemur_garnettii
ENSDARG00000009806	smfn	75	79.592	ENSOARG00000001040	REXO2	92	80.612	Ovis_aries
ENSDARG00000009806	smfn	73	79.365	ENSPPAG00000039849	REXO2	88	76.077	Pan_paniscus
ENSDARG00000009806	smfn	85	71.622	ENSPPRG00000007255	REXO2	93	72.523	Panthera_pardus
ENSDARG00000009806	smfn	71	78.495	ENSPTIG00000015578	REXO2	99	79.570	Panthera_tigris_altaica
ENSDARG00000009806	smfn	73	79.365	ENSPTRG00000004306	REXO2	88	76.077	Pan_troglodytes
ENSDARG00000009806	smfn	78	75.248	ENSPANG00000010675	REXO2	93	72.523	Papio_anubis
ENSDARG00000009806	smfn	79	80.676	ENSPKIG00000000911	smfn	77	88.514	Paramormyrops_kingsleyae
ENSDARG00000009806	smfn	75	79.592	ENSPSIG00000005151	REXO2	71	79.592	Pelodiscus_sinensis
ENSDARG00000009806	smfn	71	79.679	ENSPMGG00000007442	smfn	99	79.679	Periophthalmus_magnuspinnatus
ENSDARG00000009806	smfn	75	64.286	ENSPEMG00000001421	Rexo2	82	65.306	Peromyscus_maniculatus_bairdii
ENSDARG00000009806	smfn	81	74.766	ENSPCIG00000011227	REXO2	57	74.766	Phascolarctos_cinereus
ENSDARG00000009806	smfn	88	71.983	ENSPFOG00000017861	smfn	97	79.695	Poecilia_formosa
ENSDARG00000009806	smfn	81	69.856	ENSPLAG00000007327	REXO2	78	69.856	Poecilia_latipinna
ENSDARG00000009806	smfn	88	71.552	ENSPMEG00000017343	smfn	81	71.552	Poecilia_mexicana
ENSDARG00000009806	smfn	88	71.552	ENSPREG00000016438	smfn	81	71.552	Poecilia_reticulata
ENSDARG00000009806	smfn	78	75.248	ENSPPYG00000003895	REXO2	93	72.523	Pongo_abelii
ENSDARG00000009806	smfn	75	79.082	ENSPCAG00000005237	REXO2	83	80.102	Procavia_capensis
ENSDARG00000009806	smfn	65	79.882	ENSPCOG00000027639	REXO2	87	79.882	Propithecus_coquereli
ENSDARG00000009806	smfn	85	61.607	ENSPVAG00000005295	REXO2	93	62.500	Pteropus_vampyrus
ENSDARG00000009806	smfn	74	79.688	ENSPNYG00000018401	smfn	74	79.688	Pundamilia_nyererei
ENSDARG00000009806	smfn	73	85.938	ENSPNAG00000005290	smfn	77	80.383	Pygocentrus_nattereri
ENSDARG00000009806	smfn	73	80.105	ENSRNOG00000018939	Rexo2	81	81.152	Rattus_norvegicus
ENSDARG00000009806	smfn	78	75.248	ENSRBIG00000037809	REXO2	93	72.523	Rhinopithecus_bieti
ENSDARG00000009806	smfn	78	75.248	ENSRROG00000038928	REXO2	93	72.523	Rhinopithecus_roxellana
ENSDARG00000009806	smfn	71	42.188	YLR059C	REX2	71	42.188	Saccharomyces_cerevisiae
ENSDARG00000009806	smfn	85	72.072	ENSSBOG00000028651	REXO2	93	72.973	Saimiri_boliviensis_boliviensis
ENSDARG00000009806	smfn	81	75.117	ENSSHAG00000008008	REXO2	91	75.117	Sarcophilus_harrisii
ENSDARG00000009806	smfn	69	83.978	ENSSFOG00015022414	smfn	96	83.978	Scleropages_formosus
ENSDARG00000009806	smfn	91	72.803	ENSSMAG00000003168	smfn	83	72.803	Scophthalmus_maximus
ENSDARG00000009806	smfn	75	80.102	ENSSDUG00000015624	smfn	69	80.102	Seriola_dumerili
ENSDARG00000009806	smfn	93	68.898	ENSSLDG00000014005	smfn	86	68.898	Seriola_lalandi_dorsalis
ENSDARG00000009806	smfn	60	74.684	ENSSPUG00000006005	REXO2	85	74.684	Sphenodon_punctatus
ENSDARG00000009806	smfn	69	84.066	ENSSPAG00000001530	smfn	98	84.066	Stegastes_partitus
ENSDARG00000009806	smfn	85	71.622	ENSSSCG00000015056	REXO2	93	72.523	Sus_scrofa
ENSDARG00000009806	smfn	73	78.534	ENSTGUG00000000121	REXO2	88	74.757	Taeniopygia_guttata
ENSDARG00000009806	smfn	73	79.255	ENSTRUG00000021529	smfn	72	77.835	Takifugu_rubripes
ENSDARG00000009806	smfn	83	75.576	ENSTNIG00000008588	smfn	96	75.576	Tetraodon_nigroviridis
ENSDARG00000009806	smfn	80	75.598	ENSTBEG00000017040	REXO2	83	81.122	Tupaia_belangeri
ENSDARG00000009806	smfn	80	74.641	ENSTTRG00000014928	REXO2	88	75.598	Tursiops_truncatus
ENSDARG00000009806	smfn	85	65.766	ENSUAMG00000019096	REXO2	92	75.275	Ursus_americanus
ENSDARG00000009806	smfn	85	72.072	ENSUMAG00000003770	REXO2	93	72.973	Ursus_maritimus
ENSDARG00000009806	smfn	64	63.253	ENSVPAG00000006301	REXO2	99	61.081	Vicugna_pacos
ENSDARG00000009806	smfn	85	72.523	ENSVVUG00000025223	REXO2	83	80.612	Vulpes_vulpes
ENSDARG00000009806	smfn	75	81.218	ENSXETG00000012648	rexo2	80	81.218	Xenopus_tropicalis
ENSDARG00000009806	smfn	99	62.595	ENSXCOG00000018838	smfn	100	74.627	Xiphophorus_couchianus
ENSDARG00000009806	smfn	77	76.847	ENSXMAG00000021125	smfn	65	76.847	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	21873635.	IBA	Function
GO:0000175	3'-5'-exoribonuclease activity	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005739	mitochondrion	21873635.	IBA	Component