EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000009871 (Gene tree)
Gene ID: 192330
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 3583 bases
Position: chr6:54430413-54433995
Accession: ZDB-GENE-020419-26
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000010253	zf-U1	PF06220.12	2e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000017230	-	917	-	ENSDARP00000010253	159 (aa)	-	Q8JGS0

Gene Model

Click here to download ENSDARG00000009871's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000009871's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000009871	snrpc	100	84.906	ENSG00000124562	SNRPC	100	84.906	Homo_sapiens
ENSDARG00000009871	snrpc	100	83.019	ENSAMEG00000000963	SNRPC	87	84.076	Ailuropoda_melanoleuca
ENSDARG00000009871	snrpc	100	84.906	ENSANAG00000019696	-	100	84.906	Aotus_nancymaae
ENSDARG00000009871	snrpc	100	82.500	ENSANAG00000019157	-	100	81.132	Aotus_nancymaae
ENSDARG00000009871	snrpc	100	62.264	ENSANAG00000021444	-	100	57.862	Aotus_nancymaae
ENSDARG00000009871	snrpc	99	77.848	ENSANAG00000020588	-	92	77.848	Aotus_nancymaae
ENSDARG00000009871	snrpc	100	72.327	ENSANAG00000021026	-	92	72.327	Aotus_nancymaae
ENSDARG00000009871	snrpc	100	78.616	ENSANAG00000019726	-	92	74.214	Aotus_nancymaae
ENSDARG00000009871	snrpc	100	84.277	ENSANAG00000007843	-	100	84.277	Aotus_nancymaae
ENSDARG00000009871	snrpc	100	96.226	ENSAMXG00000032641	snrpc	87	96.226	Astyanax_mexicanus
ENSDARG00000009871	snrpc	100	84.906	ENSBTAG00000024549	SNRPC	100	84.906	Bos_taurus
ENSDARG00000009871	snrpc	100	84.906	ENSCJAG00000015321	-	100	84.906	Callithrix_jacchus
ENSDARG00000009871	snrpc	100	84.277	ENSCJAG00000043055	-	100	84.277	Callithrix_jacchus
ENSDARG00000009871	snrpc	100	81.761	ENSCAFG00000031775	-	100	81.761	Canis_familiaris
ENSDARG00000009871	snrpc	100	69.375	ENSCAFG00000025525	-	100	49.724	Canis_familiaris
ENSDARG00000009871	snrpc	100	84.906	ENSCAFG00020005945	-	100	84.906	Canis_lupus_dingo
ENSDARG00000009871	snrpc	100	81.761	ENSCAFG00020017383	-	100	81.761	Canis_lupus_dingo
ENSDARG00000009871	snrpc	99	75.159	ENSCAFG00020009944	-	90	75.159	Canis_lupus_dingo
ENSDARG00000009871	snrpc	100	84.277	ENSCHIG00000012087	-	100	84.277	Capra_hircus
ENSDARG00000009871	snrpc	100	66.038	ENSCHIG00000005039	-	100	53.086	Capra_hircus
ENSDARG00000009871	snrpc	100	69.182	ENSTSYG00000025721	-	100	64.198	Carlito_syrichta
ENSDARG00000009871	snrpc	100	84.906	ENSTSYG00000011216	-	100	84.906	Carlito_syrichta
ENSDARG00000009871	snrpc	99	79.114	ENSTSYG00000029745	-	74	82.432	Carlito_syrichta
ENSDARG00000009871	snrpc	89	83.099	ENSCAPG00000005161	SNRPC	100	83.099	Cavia_aperea
ENSDARG00000009871	snrpc	100	84.906	ENSCPOG00000008563	SNRPC	100	84.906	Cavia_porcellus
ENSDARG00000009871	snrpc	98	64.744	ENSCCAG00000022209	-	95	64.744	Cebus_capucinus
ENSDARG00000009871	snrpc	98	76.923	ENSCCAG00000022751	-	95	76.923	Cebus_capucinus
ENSDARG00000009871	snrpc	100	60.377	ENSCCAG00000028293	-	100	58.491	Cebus_capucinus
ENSDARG00000009871	snrpc	100	79.874	ENSCCAG00000036059	-	89	79.874	Cebus_capucinus
ENSDARG00000009871	snrpc	99	68.790	ENSCCAG00000026624	-	66	63.125	Cebus_capucinus
ENSDARG00000009871	snrpc	100	84.906	ENSCATG00000035787	SNRPC	100	84.906	Cercocebus_atys
ENSDARG00000009871	snrpc	100	84.906	ENSCLAG00000016920	SNRPC	100	84.906	Chinchilla_lanigera
ENSDARG00000009871	snrpc	99	70.886	ENSCLAG00000010242	-	96	70.064	Chinchilla_lanigera
ENSDARG00000009871	snrpc	100	72.956	ENSCHOG00000011439	SNRPC	88	73.885	Choloepus_hoffmanni
ENSDARG00000009871	snrpc	100	84.906	ENSCANG00000028035	SNRPC	100	84.906	Colobus_angolensis_palliatus
ENSDARG00000009871	snrpc	100	72.327	ENSCGRG00001021483	-	100	69.811	Cricetulus_griseus_chok1gshd
ENSDARG00000009871	snrpc	99	82.166	ENSCSEG00000016845	snrpc	100	78.750	Cynoglossus_semilaevis
ENSDARG00000009871	snrpc	100	84.277	ENSDNOG00000034699	-	99	84.277	Dasypus_novemcinctus
ENSDARG00000009871	snrpc	79	65.873	ENSDORG00000029823	-	64	83.908	Dipodomys_ordii
ENSDARG00000009871	snrpc	98	78.205	ENSETEG00000011265	-	100	78.205	Echinops_telfairi
ENSDARG00000009871	snrpc	100	84.906	ENSEASG00005021007	SNRPC	100	84.906	Equus_asinus_asinus
ENSDARG00000009871	snrpc	100	84.906	ENSECAG00000026848	SNRPC	100	84.906	Equus_caballus
ENSDARG00000009871	snrpc	99	71.519	ENSEEUG00000014633	SNRPC	90	71.519	Erinaceus_europaeus
ENSDARG00000009871	snrpc	100	83.019	ENSELUG00000000815	SNRPC	100	83.019	Esox_lucius
ENSDARG00000009871	snrpc	100	82.822	ENSELUG00000020489	snrpc	100	74.375	Esox_lucius
ENSDARG00000009871	snrpc	100	84.906	ENSFCAG00000044077	-	100	84.906	Felis_catus
ENSDARG00000009871	snrpc	100	84.906	ENSFALG00000003756	SNRPC	100	84.906	Ficedula_albicollis
ENSDARG00000009871	snrpc	100	84.906	ENSFDAG00000018111	SNRPC	100	84.906	Fukomys_damarensis
ENSDARG00000009871	snrpc	75	88.235	ENSFHEG00000016667	snrpc	97	88.235	Fundulus_heteroclitus
ENSDARG00000009871	snrpc	100	83.750	ENSGALG00000002773	SNRPC	100	83.750	Gallus_gallus
ENSDARG00000009871	snrpc	100	84.906	ENSGGOG00000012499	SNRPC	100	84.906	Gorilla_gorilla
ENSDARG00000009871	snrpc	81	66.406	ENSHGLG00000005871	-	100	61.635	Heterocephalus_glaber_female
ENSDARG00000009871	snrpc	100	84.906	ENSHGLG00000013981	SNRPC	100	84.906	Heterocephalus_glaber_female
ENSDARG00000009871	snrpc	100	75.472	ENSHGLG00000017741	-	100	75.472	Heterocephalus_glaber_female
ENSDARG00000009871	snrpc	100	81.132	ENSHGLG00100017764	-	100	81.132	Heterocephalus_glaber_male
ENSDARG00000009871	snrpc	100	75.472	ENSHGLG00100010786	-	100	75.472	Heterocephalus_glaber_male
ENSDARG00000009871	snrpc	100	84.906	ENSHGLG00100009478	SNRPC	100	84.906	Heterocephalus_glaber_male
ENSDARG00000009871	snrpc	100	93.711	ENSIPUG00000024851	snrpc	100	93.711	Ictalurus_punctatus
ENSDARG00000009871	snrpc	100	84.906	ENSSTOG00000013786	SNRPC	100	84.906	Ictidomys_tridecemlineatus
ENSDARG00000009871	snrpc	100	84.906	ENSLAFG00000013534	SNRPC	100	84.906	Loxodonta_africana
ENSDARG00000009871	snrpc	100	84.906	ENSMFAG00000031764	-	100	84.906	Macaca_fascicularis
ENSDARG00000009871	snrpc	100	84.277	ENSMFAG00000030525	-	100	84.277	Macaca_fascicularis
ENSDARG00000009871	snrpc	100	74.843	ENSMMUG00000045425	-	100	74.843	Macaca_mulatta
ENSDARG00000009871	snrpc	100	83.648	ENSMMUG00000000869	-	95	84.615	Macaca_mulatta
ENSDARG00000009871	snrpc	100	83.648	ENSMMUG00000039415	-	100	83.648	Macaca_mulatta
ENSDARG00000009871	snrpc	100	84.906	ENSMNEG00000032731	SNRPC	100	84.906	Macaca_nemestrina
ENSDARG00000009871	snrpc	100	84.906	ENSMLEG00000033916	-	100	84.906	Mandrillus_leucophaeus
ENSDARG00000009871	snrpc	97	59.740	ENSMLEG00000039724	-	81	55.195	Mandrillus_leucophaeus
ENSDARG00000009871	snrpc	97	77.419	ENSMLEG00000040224	-	89	77.419	Mandrillus_leucophaeus
ENSDARG00000009871	snrpc	100	76.875	ENSMGAG00000006054	SNRPC	100	83.648	Meleagris_gallopavo
ENSDARG00000009871	snrpc	100	69.811	ENSMICG00000036552	-	87	67.308	Microcebus_murinus
ENSDARG00000009871	snrpc	100	84.277	ENSMICG00000032183	-	100	84.277	Microcebus_murinus
ENSDARG00000009871	snrpc	100	85.535	ENSMICG00000007339	-	100	83.648	Microcebus_murinus
ENSDARG00000009871	snrpc	100	84.277	ENSMODG00000013904	-	100	84.277	Monodelphis_domestica
ENSDARG00000009871	snrpc	100	71.250	ENSMALG00000001197	snrpc	100	73.750	Monopterus_albus
ENSDARG00000009871	snrpc	89	82.394	ENSMUSG00000024217	Snrpc	100	84.277	Mus_musculus
ENSDARG00000009871	snrpc	100	83.019	ENSMPUG00000003210	SNRPC	99	84.076	Mustela_putorius_furo
ENSDARG00000009871	snrpc	100	83.019	ENSMLUG00000002488	SNRPC	99	84.076	Myotis_lucifugus
ENSDARG00000009871	snrpc	100	84.906	ENSNLEG00000034810	SNRPC	100	84.906	Nomascus_leucogenys
ENSDARG00000009871	snrpc	89	83.099	ENSMEUG00000009300	SNRPC	100	83.099	Notamacropus_eugenii
ENSDARG00000009871	snrpc	77	81.301	ENSODEG00000006008	-	66	81.522	Octodon_degus
ENSDARG00000009871	snrpc	100	84.277	ENSODEG00000020201	-	100	84.277	Octodon_degus
ENSDARG00000009871	snrpc	100	84.906	ENSODEG00000020370	-	100	84.906	Octodon_degus
ENSDARG00000009871	snrpc	100	84.906	ENSODEG00000018985	-	100	84.906	Octodon_degus
ENSDARG00000009871	snrpc	100	84.906	ENSODEG00000017080	-	100	84.906	Octodon_degus
ENSDARG00000009871	snrpc	89	80.822	ENSOANG00000003405	SNRPC	100	79.730	Ornithorhynchus_anatinus
ENSDARG00000009871	snrpc	60	86.316	ENSOCUG00000023292	-	100	83.648	Oryctolagus_cuniculus
ENSDARG00000009871	snrpc	100	84.906	ENSOCUG00000026668	-	100	84.906	Oryctolagus_cuniculus
ENSDARG00000009871	snrpc	75	88.235	ENSOMEG00000012014	snrpc	86	83.750	Oryzias_melastigma
ENSDARG00000009871	snrpc	97	84.516	ENSOGAG00000008755	-	88	84.076	Otolemur_garnettii
ENSDARG00000009871	snrpc	97	61.688	ENSOGAG00000028405	-	99	66.883	Otolemur_garnettii
ENSDARG00000009871	snrpc	100	83.648	ENSOGAG00000026269	-	100	83.648	Otolemur_garnettii
ENSDARG00000009871	snrpc	100	84.906	ENSOARG00000010823	SNRPC	100	84.906	Ovis_aries
ENSDARG00000009871	snrpc	100	84.906	ENSPPAG00000043871	SNRPC	100	84.906	Pan_paniscus
ENSDARG00000009871	snrpc	96	46.405	ENSPPRG00000016017	-	61	43.269	Panthera_pardus
ENSDARG00000009871	snrpc	100	58.491	ENSPPRG00000010967	-	89	46.386	Panthera_pardus
ENSDARG00000009871	snrpc	100	84.906	ENSPPRG00000008647	-	100	84.906	Panthera_pardus
ENSDARG00000009871	snrpc	55	72.414	ENSPTIG00000013329	-	60	71.739	Panthera_tigris_altaica
ENSDARG00000009871	snrpc	100	84.906	ENSPTIG00000021867	-	100	84.906	Panthera_tigris_altaica
ENSDARG00000009871	snrpc	100	84.906	ENSPTRG00000018070	SNRPC	100	84.906	Pan_troglodytes
ENSDARG00000009871	snrpc	100	73.585	ENSPANG00000018228	-	94	73.585	Papio_anubis
ENSDARG00000009871	snrpc	100	84.906	ENSPANG00000022802	-	100	84.906	Papio_anubis
ENSDARG00000009871	snrpc	100	83.648	ENSPKIG00000001671	SNRPC	100	83.648	Paramormyrops_kingsleyae
ENSDARG00000009871	snrpc	59	92.553	ENSPKIG00000003136	snrpc	100	89.032	Paramormyrops_kingsleyae
ENSDARG00000009871	snrpc	99	70.064	ENSPMGG00000022162	snrpc	100	68.153	Periophthalmus_magnuspinnatus
ENSDARG00000009871	snrpc	100	74.214	ENSPEMG00000002763	-	100	67.925	Peromyscus_maniculatus_bairdii
ENSDARG00000009871	snrpc	99	66.879	ENSPMAG00000000602	snrpc	59	72.826	Petromyzon_marinus
ENSDARG00000009871	snrpc	99	68.553	ENSPREG00000013017	snrpc	79	62.264	Poecilia_reticulata
ENSDARG00000009871	snrpc	100	83.019	ENSPCAG00000016885	SNRPC	90	84.076	Procavia_capensis
ENSDARG00000009871	snrpc	100	84.906	ENSPCOG00000004904	SNRPC	100	84.906	Propithecus_coquereli
ENSDARG00000009871	snrpc	100	82.390	ENSPVAG00000015597	SNRPC	87	83.439	Pteropus_vampyrus
ENSDARG00000009871	snrpc	84	67.669	ENSPNYG00000004900	snrpc	100	57.962	Pundamilia_nyererei
ENSDARG00000009871	snrpc	100	87.421	ENSPNAG00000012799	snrpc	100	86.792	Pygocentrus_nattereri
ENSDARG00000009871	snrpc	100	74.843	ENSRBIG00000036353	-	83	74.843	Rhinopithecus_bieti
ENSDARG00000009871	snrpc	100	84.906	ENSRBIG00000014819	-	100	84.906	Rhinopithecus_bieti
ENSDARG00000009871	snrpc	100	84.277	ENSRBIG00000022998	-	100	84.277	Rhinopithecus_bieti
ENSDARG00000009871	snrpc	100	84.906	ENSRBIG00000037567	-	100	84.906	Rhinopithecus_bieti
ENSDARG00000009871	snrpc	100	84.906	ENSRROG00000041300	SNRPC	100	84.906	Rhinopithecus_roxellana
ENSDARG00000009871	snrpc	98	70.513	ENSSBOG00000032882	-	93	69.872	Saimiri_boliviensis_boliviensis
ENSDARG00000009871	snrpc	98	71.795	ENSSBOG00000023189	-	91	71.795	Saimiri_boliviensis_boliviensis
ENSDARG00000009871	snrpc	100	84.906	ENSSBOG00000031528	-	100	84.906	Saimiri_boliviensis_boliviensis
ENSDARG00000009871	snrpc	95	68.874	ENSSBOG00000032361	-	89	70.833	Saimiri_boliviensis_boliviensis
ENSDARG00000009871	snrpc	99	84.076	ENSSHAG00000000945	-	87	84.076	Sarcophilus_harrisii
ENSDARG00000009871	snrpc	58	93.478	ENSSFOG00015022422	snrpc	100	89.744	Scleropages_formosus
ENSDARG00000009871	snrpc	100	83.019	ENSSFOG00015019150	snrpc	100	83.019	Scleropages_formosus
ENSDARG00000009871	snrpc	100	65.409	ENSSARG00000008970	SNRPC	89	65.409	Sorex_araneus
ENSDARG00000009871	snrpc	100	84.906	ENSSSCG00000001531	SNRPC	100	84.906	Sus_scrofa
ENSDARG00000009871	snrpc	100	83.648	ENSTGUG00000001773	SNRPC	99	84.177	Taeniopygia_guttata
ENSDARG00000009871	snrpc	100	71.698	ENSTRUG00000021651	snrpc	100	72.500	Takifugu_rubripes
ENSDARG00000009871	snrpc	100	75.155	ENSTNIG00000018307	snrpc	100	79.012	Tetraodon_nigroviridis
ENSDARG00000009871	snrpc	98	78.205	ENSTBEG00000013022	-	100	78.205	Tupaia_belangeri
ENSDARG00000009871	snrpc	60	81.053	ENSTBEG00000015356	-	100	66.026	Tupaia_belangeri
ENSDARG00000009871	snrpc	89	64.085	ENSTBEG00000016759	-	79	64.085	Tupaia_belangeri
ENSDARG00000009871	snrpc	100	83.019	ENSTTRG00000007827	SNRPC	86	84.076	Tursiops_truncatus
ENSDARG00000009871	snrpc	89	62.676	ENSVPAG00000003106	SNRPC	79	62.676	Vicugna_pacos
ENSDARG00000009871	snrpc	100	83.648	ENSVVUG00000021947	-	100	83.648	Vulpes_vulpes
ENSDARG00000009871	snrpc	97	79.870	ENSVVUG00000010467	-	87	80.128	Vulpes_vulpes
ENSDARG00000009871	snrpc	100	83.019	ENSXETG00000024721	snrpc	100	83.019	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000243	commitment complex	-	IEA	Component
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21468032.	IMP	Process
GO:0000387	spliceosomal snRNP assembly	-	IEA	Process
GO:0000395	mRNA 5'-splice site recognition	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	-	IEA	Component
GO:0005685	U1 snRNP	-	ISS	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0030619	U1 snRNA binding	-	IEA	Function
GO:0030627	pre-mRNA 5'-splice site binding	21873635.	IBA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0071004	U2-type prespliceosome	-	IEA	Component