EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000009950 (Gene tree)
Gene ID: 793036
Gene Symbol: edf1
Alias: zgc:73192|zgc:86829
Full Name: endothelial differentiation-related factor 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 8605
Position: chr5: 64397454-64406058
Accession: ZDB-GENE-040426-1710
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000015940	-	1041	-	ENSDARP00000026769	146 (aa)	-	Q6PBY3

Gene Model

Click here to download ENSDARG00000009950's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000009950's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000009950	edf1	98	61.111	FBgn0262732	mbf1	99	61.111	Drosophila_melanogaster
ENSDARG00000009950	edf1	97	85.211	ENSG00000107223	EDF1	96	85.211	Homo_sapiens
ENSDARG00000009950	edf1	99	82.877	ENSMUSG00000015092	Edf1	99	82.877	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0043565	sequence-specific DNA binding	-	IEA	Function