EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000010083 (Gene tree)
Gene ID
100538330
Gene Symbol
rbfox3a
Alias
rbfox3
Full Name
RNA binding fox-1 homolog 3a
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Plus strand
Length
521996 bases
Position
chr12:32729470-33251465
Accession
ZDB-GENE-111213-1
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000138305Fox-1_CPF12414.82.6e-4511
ENSDARP00000144068Fox-1_CPF12414.82.9e-4511
ENSDARP00000127143Fox-1_CPF12414.83.4e-4511
ENSDARP00000138305RRM_1PF00076.222.5e-1811
ENSDARP00000127143RRM_1PF00076.223e-1811
ENSDARP00000144068RRM_1PF00076.223.1e-1811
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000175712-1589XM_021480371ENSDARP00000144068373 (aa)XP_021336046A0A286YA75
ENSDART00000162681-7208XM_021480378ENSDARP00000138305326 (aa)XP_021336053A0A0R4IT73
ENSDART00000153146-1104XM_021480377ENSDARP00000127143367 (aa)XP_021336052U3JA78
Gene Model
Click here to download ENSDARG00000010083's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000010083's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000010083rbfox3a9975.455ENSDARG00000014746rbfox18685.500
ENSDARG00000010083rbfox3a6773.128ENSDARG00000021184rbfox1l6864.479
ENSDARG00000010083rbfox3a5467.327ENSDARG00000052182rbfox29464.912
ENSDARG00000010083rbfox3a9674.603ENSDARG00000074310rbfox3b9675.446
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000010083rbfox3a9481.230ENSG00000167281RBFOX38988.034Homo_sapiens
ENSDARG00000010083rbfox3a10072.162ENSAPOG00000015658-9171.467Acanthochromis_polyacanthus
ENSDARG00000010083rbfox3a10085.445ENSAPOG00000021630rbfox3b10084.097Acanthochromis_polyacanthus
ENSDARG00000010083rbfox3a9974.719ENSAMEG00000014170RBFOX38776.149Ailuropoda_melanoleuca
ENSDARG00000010083rbfox3a9573.333ENSACIG00000003768-9073.030Amphilophus_citrinellus
ENSDARG00000010083rbfox3a9681.447ENSACIG00000010817rbfox3b9479.801Amphilophus_citrinellus
ENSDARG00000010083rbfox3a10085.445ENSAOCG00000012358rbfox3b10084.097Amphiprion_ocellaris
ENSDARG00000010083rbfox3a10083.019ENSAOCG00000010786-9783.019Amphiprion_ocellaris
ENSDARG00000010083rbfox3a10076.819ENSAPEG00000019081rbfox3b9975.741Amphiprion_percula
ENSDARG00000010083rbfox3a9977.778ENSAPEG00000015891-8976.374Amphiprion_percula
ENSDARG00000010083rbfox3a9180.528ENSATEG00000023101-9280.528Anabas_testudineus
ENSDARG00000010083rbfox3a9675.862ENSATEG00000019945rbfox3b9577.108Anabas_testudineus
ENSDARG00000010083rbfox3a9981.571ENSACAG00000016093RBFOX310078.904Anolis_carolinensis
ENSDARG00000010083rbfox3a9480.906ENSANAG00000023457RBFOX39579.538Aotus_nancymaae
ENSDARG00000010083rbfox3a10084.636ENSACLG00000025552-10084.367Astatotilapia_calliptera
ENSDARG00000010083rbfox3a10085.714ENSACLG00000020011rbfox3b9683.827Astatotilapia_calliptera
ENSDARG00000010083rbfox3a10097.855ENSAMXG00000037246rbfox3a10097.011Astyanax_mexicanus
ENSDARG00000010083rbfox3a9979.635ENSAMXG00000042841rbfox3b10076.323Astyanax_mexicanus
ENSDARG00000010083rbfox3a7780.545ENSBTAG00000006280RBFOX39359.943Bos_taurus
ENSDARG00000010083rbfox3a9471.521ENSCJAG00000009563RBFOX39668.571Callithrix_jacchus
ENSDARG00000010083rbfox3a7490.496ENSCAFG00000005547RBFOX38587.603Canis_familiaris
ENSDARG00000010083rbfox3a9469.382ENSCAFG00020008126RBFOX39268.857Canis_lupus_dingo
ENSDARG00000010083rbfox3a9169.714ENSCHIG00000009124RBFOX39268.857Capra_hircus
ENSDARG00000010083rbfox3a9470.225ENSTSYG00000029617RBFOX39671.714Carlito_syrichta
ENSDARG00000010083rbfox3a9169.886ENSCPOG00000021703RBFOX39670.170Cavia_porcellus
ENSDARG00000010083rbfox3a9480.906ENSCCAG00000028450RBFOX39579.538Cebus_capucinus
ENSDARG00000010083rbfox3a9481.230ENSCATG00000018349RBFOX39579.868Cercocebus_atys
ENSDARG00000010083rbfox3a9170.571ENSCLAG00000006449RBFOX39671.429Chinchilla_lanigera
ENSDARG00000010083rbfox3a9481.230ENSCSAG00000002355RBFOX39579.868Chlorocebus_sabaeus
ENSDARG00000010083rbfox3a9979.635ENSCPBG00000010904RBFOX39878.723Chrysemys_picta_bellii
ENSDARG00000010083rbfox3a9481.230ENSCANG00000043120RBFOX39579.868Colobus_angolensis_palliatus
ENSDARG00000010083rbfox3a9468.067ENSCGRG00001019476Rbfox39669.516Cricetulus_griseus_chok1gshd
ENSDARG00000010083rbfox3a9468.067ENSCGRG00000003268Rbfox39669.516Cricetulus_griseus_crigri
ENSDARG00000010083rbfox3a10069.437ENSCSEG00000020606RBFOX310068.097Cynoglossus_semilaevis
ENSDARG00000010083rbfox3a10083.558ENSCSEG00000015567RBFOX39784.595Cynoglossus_semilaevis
ENSDARG00000010083rbfox3a9986.322ENSCVAG00000006882rbfox3b10083.554Cyprinodon_variegatus
ENSDARG00000010083rbfox3a7971.197ENSDNOG00000039391RBFOX36593.443Dasypus_novemcinctus
ENSDARG00000010083rbfox3a9461.127ENSDORG00000005352Rbfox39558.453Dipodomys_ordii
ENSDARG00000010083rbfox3a8558.076ENSEBUG00000013559RBFOX37160.769Eptatretus_burgeri
ENSDARG00000010083rbfox3a9967.733ENSEBUG00000002129RBFOX39567.638Eptatretus_burgeri
ENSDARG00000010083rbfox3a9479.355ENSEASG00005005059RBFOX39580.263Equus_asinus_asinus
ENSDARG00000010083rbfox3a9479.032ENSECAG00000023811RBFOX39580.263Equus_caballus
ENSDARG00000010083rbfox3a8184.507ENSEEUG00000013974RBFOX36893.443Erinaceus_europaeus
ENSDARG00000010083rbfox3a10084.367ENSELUG00000017963rbfox3b10081.698Esox_lucius
ENSDARG00000010083rbfox3a9977.219ENSFCAG00000002555RBFOX310078.630Felis_catus
ENSDARG00000010083rbfox3a9966.759ENSFALG00000012288RBFOX38966.848Ficedula_albicollis
ENSDARG00000010083rbfox3a9165.057ENSFDAG00000007489RBFOX39664.773Fukomys_damarensis
ENSDARG00000010083rbfox3a9676.415ENSFHEG00000008550rbfox3b9574.503Fundulus_heteroclitus
ENSDARG00000010083rbfox3a9666.022ENSGMOG00000019304-9568.770Gadus_morhua
ENSDARG00000010083rbfox3a9982.675ENSGALG00000032889RBFOX310080.165Gallus_gallus
ENSDARG00000010083rbfox3a10080.054ENSGAFG00000005025rbfox3b10078.249Gambusia_affinis
ENSDARG00000010083rbfox3a9173.504ENSGACG00000002138-9273.504Gasterosteus_aculeatus
ENSDARG00000010083rbfox3a9979.635ENSGAGG00000020025RBFOX39679.063Gopherus_agassizii
ENSDARG00000010083rbfox3a9481.230ENSGGOG00000012546RBFOX39579.868Gorilla_gorilla
ENSDARG00000010083rbfox3a10085.714ENSHBUG00000018099rbfox3b10083.289Haplochromis_burtoni
ENSDARG00000010083rbfox3a9984.498ENSHBUG00000023098-9583.333Haplochromis_burtoni
ENSDARG00000010083rbfox3a9169.774ENSHGLG00000008679RBFOX39669.209Heterocephalus_glaber_female
ENSDARG00000010083rbfox3a9165.537ENSHGLG00100014739RBFOX39266.384Heterocephalus_glaber_male
ENSDARG00000010083rbfox3a9772.826ENSHCOG00000007444RBFOX39373.442Hippocampus_comes
ENSDARG00000010083rbfox3a9176.821ENSHCOG00000001863RBFOX38775.166Hippocampus_comes
ENSDARG00000010083rbfox3a9667.714ENSIPUG00000021966rbfox3b9877.985Ictalurus_punctatus
ENSDARG00000010083rbfox3a10094.638ENSIPUG00000012010rbfox3a10094.638Ictalurus_punctatus
ENSDARG00000010083rbfox3a9465.495ENSSTOG00000026817RBFOX39565.472Ictidomys_tridecemlineatus
ENSDARG00000010083rbfox3a9468.820ENSJJAG00000014167Rbfox39669.714Jaculus_jaculus
ENSDARG00000010083rbfox3a9986.322ENSKMAG00000006726rbfox3b10083.827Kryptolebias_marmoratus
ENSDARG00000010083rbfox3a10085.445ENSLBEG00000004030rbfox3b10084.097Labrus_bergylta
ENSDARG00000010083rbfox3a10088.064ENSLBEG00000022508-10087.332Labrus_bergylta
ENSDARG00000010083rbfox3a9972.269ENSLACG00000018409-9072.269Latimeria_chalumnae
ENSDARG00000010083rbfox3a5062.195ENSLACG00000000021-8065.409Latimeria_chalumnae
ENSDARG00000010083rbfox3a9991.185ENSLOCG00000012267rbfox3a9891.185Lepisosteus_oculatus
ENSDARG00000010083rbfox3a9973.224ENSLAFG00000016623RBFOX39076.177Loxodonta_africana
ENSDARG00000010083rbfox3a9469.382ENSMFAG00000002247RBFOX39668.857Macaca_fascicularis
ENSDARG00000010083rbfox3a9481.230ENSMMUG00000023028RBFOX39579.868Macaca_mulatta
ENSDARG00000010083rbfox3a9480.906ENSMNEG00000041147RBFOX39579.538Macaca_nemestrina
ENSDARG00000010083rbfox3a9481.230ENSMLEG00000025686RBFOX39579.868Mandrillus_leucophaeus
ENSDARG00000010083rbfox3a9981.763ENSMAMG00000020600-9379.580Mastacembelus_armatus
ENSDARG00000010083rbfox3a9678.616ENSMAMG00000019810rbfox3b9475.828Mastacembelus_armatus
ENSDARG00000010083rbfox3a10085.714ENSMZEG00005000781rbfox3b10083.827Maylandia_zebra
ENSDARG00000010083rbfox3a9264.865ENSMZEG00005003055-5390.984Maylandia_zebra
ENSDARG00000010083rbfox3a6776.682ENSMGAG00000005600RBFOX38377.130Meleagris_gallopavo
ENSDARG00000010083rbfox3a9169.714ENSMAUG00000013543Rbfox39670.571Mesocricetus_auratus
ENSDARG00000010083rbfox3a9980.547ENSMICG00000014898RBFOX39679.868Microcebus_murinus
ENSDARG00000010083rbfox3a9469.944ENSMOCG00000015373Rbfox39671.143Microtus_ochrogaster
ENSDARG00000010083rbfox3a9984.290ENSMMOG00000020193rbfox3b10082.586Mola_mola
ENSDARG00000010083rbfox3a9881.319ENSMODG00000002089RBFOX310079.121Monodelphis_domestica
ENSDARG00000010083rbfox3a10087.798ENSMALG00000018270-10087.332Monopterus_albus
ENSDARG00000010083rbfox3a10084.615ENSMALG00000020407rbfox3b10083.019Monopterus_albus
ENSDARG00000010083rbfox3a9481.230MGP_CAROLIEiJ_G0017487Rbfox39691.367Mus_caroli
ENSDARG00000010083rbfox3a9481.230ENSMUSG00000025576Rbfox39691.367Mus_musculus
ENSDARG00000010083rbfox3a9479.032MGP_PahariEiJ_G0018614Rbfox39692.086Mus_pahari
ENSDARG00000010083rbfox3a9481.553MGP_SPRETEiJ_G0018331Rbfox39691.367Mus_spretus
ENSDARG00000010083rbfox3a9970.933ENSMPUG00000012319RBFOX39571.698Mustela_putorius_furo
ENSDARG00000010083rbfox3a9470.225ENSNGAG00000018006Rbfox39671.714Nannospalax_galili
ENSDARG00000010083rbfox3a10084.085ENSNBRG00000010102rbfox3b10083.289Neolamprologus_brichardi
ENSDARG00000010083rbfox3a9977.879ENSNBRG00000022885-9174.481Neolamprologus_brichardi
ENSDARG00000010083rbfox3a9654.037ENSNLEG00000000153-6971.429Nomascus_leucogenys
ENSDARG00000010083rbfox3a9151.289ENSMEUG00000004218-7589.655Notamacropus_eugenii
ENSDARG00000010083rbfox3a7786.885ENSOPRG00000016279-7186.885Ochotona_princeps
ENSDARG00000010083rbfox3a9481.230ENSODEG00000009433RBFOX39582.508Octodon_degus
ENSDARG00000010083rbfox3a9984.498ENSONIG00000007282-9882.596Oreochromis_niloticus
ENSDARG00000010083rbfox3a9986.322ENSONIG00000009549rbfox3b10083.554Oreochromis_niloticus
ENSDARG00000010083rbfox3a10085.984ENSORLG00000000905rbfox3b7983.827Oryzias_latipes
ENSDARG00000010083rbfox3a10085.984ENSORLG00020018030rbfox3b9983.827Oryzias_latipes_hni
ENSDARG00000010083rbfox3a10085.714ENSORLG00015009200rbfox3b10083.289Oryzias_latipes_hsok
ENSDARG00000010083rbfox3a8080.192ENSOMEG00000014677rbfox3b8679.697Oryzias_melastigma
ENSDARG00000010083rbfox3a9978.042ENSOGAG00000029595RBFOX38779.279Otolemur_garnettii
ENSDARG00000010083rbfox3a9860.807ENSOARG00000002908RBFOX38959.483Ovis_aries
ENSDARG00000010083rbfox3a8079.468ENSPPAG00000025383RBFOX38880.545Pan_paniscus
ENSDARG00000010083rbfox3a9468.857ENSPPRG00000007819RBFOX39669.767Panthera_pardus
ENSDARG00000010083rbfox3a9481.230ENSPTRG00000009727RBFOX39579.868Pan_troglodytes
ENSDARG00000010083rbfox3a9481.230ENSPANG00000019837RBFOX39579.868Papio_anubis
ENSDARG00000010083rbfox3a10091.247ENSPKIG00000010299rbfox3a9490.030Paramormyrops_kingsleyae
ENSDARG00000010083rbfox3a9968.693ENSPKIG00000022633-9664.110Paramormyrops_kingsleyae
ENSDARG00000010083rbfox3a8781.346ENSPMGG00000008000rbfox3b10082.569Periophthalmus_magnuspinnatus
ENSDARG00000010083rbfox3a9470.225ENSPEMG00000010500Rbfox39671.429Peromyscus_maniculatus_bairdii
ENSDARG00000010083rbfox3a5476.842ENSPMAG00000008689rbfox3b9378.947Petromyzon_marinus
ENSDARG00000010083rbfox3a9970.479ENSPCIG00000005766RBFOX310069.830Phascolarctos_cinereus
ENSDARG00000010083rbfox3a10085.411ENSPFOG00000018294rbfox3b9683.554Poecilia_formosa
ENSDARG00000010083rbfox3a7588.163ENSPLAG00000000481rbfox3b7585.306Poecilia_latipinna
ENSDARG00000010083rbfox3a9676.415ENSPMEG00000022997rbfox3b9574.503Poecilia_mexicana
ENSDARG00000010083rbfox3a10086.523ENSPREG00000012886rbfox3b9984.367Poecilia_reticulata
ENSDARG00000010083rbfox3a8569.759ENSPPYG00000008704RBFOX38273.852Pongo_abelii
ENSDARG00000010083rbfox3a9468.451ENSPCAG00000001401RBFOX39670.774Procavia_capensis
ENSDARG00000010083rbfox3a9670.219ENSPCOG00000012689RBFOX39769.143Propithecus_coquereli
ENSDARG00000010083rbfox3a9160.000ENSPVAG00000015243RBFOX39661.714Pteropus_vampyrus
ENSDARG00000010083rbfox3a10078.976ENSPNYG00000009079-9676.550Pundamilia_nyererei
ENSDARG00000010083rbfox3a10075.741ENSPNYG00000010414rbfox3b9974.933Pundamilia_nyererei
ENSDARG00000010083rbfox3a9666.038ENSPNAG00000018173rbfox3b8563.576Pygocentrus_nattereri
ENSDARG00000010083rbfox3a10097.587ENSPNAG00000002889rbfox3a10097.587Pygocentrus_nattereri
ENSDARG00000010083rbfox3a9479.032ENSRNOG00000003386Rbfox39579.934Rattus_norvegicus
ENSDARG00000010083rbfox3a9978.042ENSRBIG00000040449RBFOX310079.178Rhinopithecus_bieti
ENSDARG00000010083rbfox3a9481.230ENSRROG00000000766RBFOX39579.868Rhinopithecus_roxellana
ENSDARG00000010083rbfox3a9480.906ENSSBOG00000031591RBFOX39579.538Saimiri_boliviensis_boliviensis
ENSDARG00000010083rbfox3a9973.961ENSSHAG00000016076RBFOX39569.536Sarcophilus_harrisii
ENSDARG00000010083rbfox3a9970.746ENSSFOG00015004716RBFOX310069.377Scleropages_formosus
ENSDARG00000010083rbfox3a10090.981ENSSFOG00015023260rbfox3a10090.716Scleropages_formosus
ENSDARG00000010083rbfox3a10083.288ENSSMAG00000019052-10083.019Scophthalmus_maximus
ENSDARG00000010083rbfox3a10081.934ENSSMAG00000012618rbfox3b8780.153Scophthalmus_maximus
ENSDARG00000010083rbfox3a10080.054ENSSDUG00000015801-9879.784Seriola_dumerili
ENSDARG00000010083rbfox3a9676.415ENSSDUG00000023183rbfox3b9574.503Seriola_dumerili
ENSDARG00000010083rbfox3a10083.288ENSSLDG00000016098-9883.288Seriola_lalandi_dorsalis
ENSDARG00000010083rbfox3a10085.445ENSSLDG00000000149rbfox3b10084.097Seriola_lalandi_dorsalis
ENSDARG00000010083rbfox3a9181.518ENSSPUG00000011733RBFOX39580.528Sphenodon_punctatus
ENSDARG00000010083rbfox3a10077.358ENSSPAG00000017571rbfox3b9976.011Stegastes_partitus
ENSDARG00000010083rbfox3a8380.000ENSSPAG00000004898-7579.688Stegastes_partitus
ENSDARG00000010083rbfox3a8386.765ENSSSCG00000039498RBFOX39673.981Sus_scrofa
ENSDARG00000010083rbfox3a9980.952ENSTRUG00000004894rbfox3b9480.473Takifugu_rubripes
ENSDARG00000010083rbfox3a9977.285ENSTNIG00000011278rbfox3b9074.863Tetraodon_nigroviridis
ENSDARG00000010083rbfox3a5861.017ENSTBEG00000004296-5961.751Tupaia_belangeri
ENSDARG00000010083rbfox3a9164.286ENSTTRG00000003676RBFOX39663.429Tursiops_truncatus
ENSDARG00000010083rbfox3a9481.553ENSUAMG00000004668RBFOX39580.198Ursus_americanus
ENSDARG00000010083rbfox3a9978.107ENSVVUG00000017864RBFOX39579.538Vulpes_vulpes
ENSDARG00000010083rbfox3a9966.289ENSXETG00000020236rbfox38865.156Xenopus_tropicalis
ENSDARG00000010083rbfox3a9984.848ENSXCOG00000018262rbfox3b10083.924Xiphophorus_couchianus
ENSDARG00000010083rbfox3a10085.445ENSXMAG00000012939rbfox3b10083.554Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus26952657.IDAComponent
GO:0005634nucleus-IEAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0006397mRNA processing-IEAProcess
GO:0007399nervous system development21873635.IBAProcess
GO:0008380RNA splicing-IEAProcess
GO:0043484regulation of RNA splicing-IEAProcess

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