EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000010194 (Gene tree)
Gene ID
336619
Gene Symbol
eif4bb
Alias
fb15c09|wu:fb15c09|zgc:101532
Full Name
eukaryotic translation initiation factor 4Bb
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Minus strand
Length
15878 bases
Position
chr6:39064824-39080701
Accession
ZDB-GENE-030131-8563
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000008894RRM_1PF00076.224.2e-1211
ENSDARP00000105821RRM_1PF00076.224.8e-1211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000128034-668--- (aa)--
ENSDART00000127365-788-ENSDARP00000105773128 (aa)-F1QZF7
ENSDART00000151424-538-ENSDARP0000012586832 (aa)-I3ISI5
ENSDART00000128308-2274XM_005166014ENSDARP00000105821632 (aa)XP_005166071F1Q8G3
ENSDART00000021520-2014-ENSDARP00000008894569 (aa)-F1R183
Gene Model
Click here to download ENSDARG00000010194's gene model file
Pathways
Pathway IDPathway NameSource
dre03013RNA transportKEGG
dre04150mTOR signaling pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000010194's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000010194eif4bb9963.538ENSDARG00000017439eif4ba9667.416
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000010194eif4bb9956.703ENSG00000063046EIF4B9678.652Homo_sapiens
ENSDARG00000010194eif4bb9855.940ENSAMEG00000012023EIF4B10055.061Ailuropoda_melanoleuca
ENSDARG00000010194eif4bb9862.519ENSATEG00000024049eif4bb9666.292Anabas_testudineus
ENSDARG00000010194eif4bb9755.403ENSACAG00000011869EIF4B9653.707Anolis_carolinensis
ENSDARG00000010194eif4bb9448.613ENSANAG00000026408-9867.431Aotus_nancymaae
ENSDARG00000010194eif4bb9951.360ENSANAG00000032230-9170.718Aotus_nancymaae
ENSDARG00000010194eif4bb9953.778ENSANAG00000027568-9852.296Aotus_nancymaae
ENSDARG00000010194eif4bb9447.776ENSANAG00000022099-5743.505Aotus_nancymaae
ENSDARG00000010194eif4bb8354.339ENSANAG00000030795-7268.519Aotus_nancymaae
ENSDARG00000010194eif4bb9955.982ENSANAG00000021956-9962.103Aotus_nancymaae
ENSDARG00000010194eif4bb9984.848ENSACLG00000009013eif4bb9765.981Astatotilapia_calliptera
ENSDARG00000010194eif4bb8786.420ENSAMXG00000034236eif4bb9571.736Astyanax_mexicanus
ENSDARG00000010194eif4bb9966.055ENSAMXG00000041675eif4ba9766.996Astyanax_mexicanus
ENSDARG00000010194eif4bb10056.541ENSBTAG00000006883EIF4B10054.769Bos_taurus
ENSDARG00000010194eif4bb9956.130ENSCJAG00000018176EIF4B9962.103Callithrix_jacchus
ENSDARG00000010194eif4bb9956.353ENSCAFG00000007117EIF4B9955.401Canis_familiaris
ENSDARG00000010194eif4bb10046.708ENSCHIG00000016477-9446.042Capra_hircus
ENSDARG00000010194eif4bb10056.119ENSCHIG00000012380-10054.504Capra_hircus
ENSDARG00000010194eif4bb9956.721ENSTSYG00000012880-9954.977Carlito_syrichta
ENSDARG00000010194eif4bb9943.492ENSTSYG00000030094-8855.556Carlito_syrichta
ENSDARG00000010194eif4bb6656.313ENSCAPG00000011923-8354.684Cavia_aperea
ENSDARG00000010194eif4bb8759.623ENSCAPG00000009384-9756.783Cavia_aperea
ENSDARG00000010194eif4bb9956.863ENSCPOG00000005595-9955.093Cavia_porcellus
ENSDARG00000010194eif4bb9751.550ENSCPOG00000021782-9951.923Cavia_porcellus
ENSDARG00000010194eif4bb9448.418ENSCCAG00000036571-9947.214Cebus_capucinus
ENSDARG00000010194eif4bb9955.960ENSCCAG00000028899-9954.664Cebus_capucinus
ENSDARG00000010194eif4bb9955.539ENSCCAG00000035872-9961.369Cebus_capucinus
ENSDARG00000010194eif4bb9968.872ENSCATG00000032007-9066.957Cercocebus_atys
ENSDARG00000010194eif4bb9952.350ENSCATG00000032438-9172.527Cercocebus_atys
ENSDARG00000010194eif4bb9957.057ENSCLAG00000013741EIF4B9955.247Chinchilla_lanigera
ENSDARG00000010194eif4bb9956.548ENSCSAG00000005574-9955.357Chlorocebus_sabaeus
ENSDARG00000010194eif4bb9750.992ENSCSAG00000007929-9163.563Chlorocebus_sabaeus
ENSDARG00000010194eif4bb9955.952ENSCHOG00000001608EIF4B9954.911Choloepus_hoffmanni
ENSDARG00000010194eif4bb9955.590ENSCPBG00000019649EIF4B9953.752Chrysemys_picta_bellii
ENSDARG00000010194eif4bb6732.824ENSCING00000016816-9437.288Ciona_intestinalis
ENSDARG00000010194eif4bb9945.079ENSCANG00000043275-9943.968Colobus_angolensis_palliatus
ENSDARG00000010194eif4bb9944.388ENSCANG00000042944-9269.540Colobus_angolensis_palliatus
ENSDARG00000010194eif4bb9955.539ENSCANG00000027371-9954.653Colobus_angolensis_palliatus
ENSDARG00000010194eif4bb9955.804ENSCGRG00001014070Eif4b9954.784Cricetulus_griseus_chok1gshd
ENSDARG00000010194eif4bb9955.804ENSCGRG00000008920Eif4b9954.784Cricetulus_griseus_crigri
ENSDARG00000010194eif4bb9863.308ENSCSEG00000004853eif4bb9968.675Cynoglossus_semilaevis
ENSDARG00000010194eif4bb5179.339ENSCVAG00000021559eif4bb9864.742Cyprinodon_variegatus
ENSDARG00000010194eif4bb9755.994ENSDORG00000004008Eif4b9953.869Dipodomys_ordii
ENSDARG00000010194eif4bb9957.143ENSEASG00005009268EIF4B9955.556Equus_asinus_asinus
ENSDARG00000010194eif4bb9857.562ENSECAG00000024091EIF4B9255.730Equus_caballus
ENSDARG00000010194eif4bb6978.049ENSELUG00000012490eif4ba7478.049Esox_lucius
ENSDARG00000010194eif4bb9956.130ENSFCAG00000000300EIF4B9955.449Felis_catus
ENSDARG00000010194eif4bb9651.170ENSFALG00000004382EIF4B9953.030Ficedula_albicollis
ENSDARG00000010194eif4bb9956.886ENSFDAG00000009048-9955.590Fukomys_damarensis
ENSDARG00000010194eif4bb9750.645ENSFDAG00000014529-9751.471Fukomys_damarensis
ENSDARG00000010194eif4bb9959.014ENSGMOG00000019470eif4bb8675.794Gadus_morhua
ENSDARG00000010194eif4bb9451.485ENSGALG00000045352EIF4B6552.683Gallus_gallus
ENSDARG00000010194eif4bb8981.967ENSGAFG00000008327eif4bb9966.819Gambusia_affinis
ENSDARG00000010194eif4bb10060.991ENSGACG00000008010eif4bb9961.033Gasterosteus_aculeatus
ENSDARG00000010194eif4bb9955.725ENSGAGG00000025237EIF4B9954.046Gopherus_agassizii
ENSDARG00000010194eif4bb9954.394ENSGGOG00000004382-9672.581Gorilla_gorilla
ENSDARG00000010194eif4bb9747.444ENSGGOG00000036580-9946.812Gorilla_gorilla
ENSDARG00000010194eif4bb5250.794ENSGGOG00000039401-8446.965Gorilla_gorilla
ENSDARG00000010194eif4bb9752.208ENSGGOG00000037011-8870.455Gorilla_gorilla
ENSDARG00000010194eif4bb9956.703ENSGGOG00000013695EIF4B9861.594Gorilla_gorilla
ENSDARG00000010194eif4bb9962.139ENSHBUG00000023345eif4bb9962.925Haplochromis_burtoni
ENSDARG00000010194eif4bb9954.173ENSHGLG00000004627-9951.988Heterocephalus_glaber_female
ENSDARG00000010194eif4bb9849.689ENSHGLG00000007993-9848.837Heterocephalus_glaber_female
ENSDARG00000010194eif4bb9956.437ENSHGLG00100008532-9955.090Heterocephalus_glaber_male
ENSDARG00000010194eif4bb9954.887ENSHGLG00100000821-9952.262Heterocephalus_glaber_male
ENSDARG00000010194eif4bb9946.405ENSHGLG00100001656-9745.318Heterocephalus_glaber_male
ENSDARG00000010194eif4bb9962.440ENSIPUG00000006890eif4b9963.040Ictalurus_punctatus
ENSDARG00000010194eif4bb9970.236ENSIPUG00000020173EIF4B9969.606Ictalurus_punctatus
ENSDARG00000010194eif4bb9856.327ENSSTOG00000029945-9954.361Ictidomys_tridecemlineatus
ENSDARG00000010194eif4bb9853.208ENSSTOG00000006800-9850.722Ictidomys_tridecemlineatus
ENSDARG00000010194eif4bb9955.105ENSJJAG00000021178Eif4b9953.762Jaculus_jaculus
ENSDARG00000010194eif4bb9952.525ENSLACG00000017403EIF4B9263.386Latimeria_chalumnae
ENSDARG00000010194eif4bb9756.193ENSLAFG00000009534EIF4B9955.108Loxodonta_africana
ENSDARG00000010194eif4bb10055.204ENSMFAG00000044995-8777.348Macaca_fascicularis
ENSDARG00000010194eif4bb9956.464ENSMFAG00000037195-9955.423Macaca_fascicularis
ENSDARG00000010194eif4bb9944.706ENSMFAG00000033728-9270.115Macaca_fascicularis
ENSDARG00000010194eif4bb9956.886ENSMMUG00000001062EIF4B8577.181Macaca_mulatta
ENSDARG00000010194eif4bb9946.013ENSMMUG00000038298-9944.867Macaca_mulatta
ENSDARG00000010194eif4bb10054.902ENSMMUG00000042124-9167.241Macaca_mulatta
ENSDARG00000010194eif4bb9747.759ENSMMUG00000008391-9945.758Macaca_mulatta
ENSDARG00000010194eif4bb9941.770ENSMNEG00000027441-9241.770Macaca_nemestrina
ENSDARG00000010194eif4bb10054.559ENSMNEG00000043577-8576.243Macaca_nemestrina
ENSDARG00000010194eif4bb9945.854ENSMNEG00000034554-9943.577Macaca_nemestrina
ENSDARG00000010194eif4bb9747.759ENSMNEG00000040490-9945.524Macaca_nemestrina
ENSDARG00000010194eif4bb9944.538ENSMNEG00000041946-9268.966Macaca_nemestrina
ENSDARG00000010194eif4bb9671.861ENSMNEG00000029195-9965.267Macaca_nemestrina
ENSDARG00000010194eif4bb9947.106ENSMLEG00000023226-9951.881Mandrillus_leucophaeus
ENSDARG00000010194eif4bb9657.075ENSMLEG00000033967-8778.453Mandrillus_leucophaeus
ENSDARG00000010194eif4bb9951.232ENSMLEG00000028830-9170.718Mandrillus_leucophaeus
ENSDARG00000010194eif4bb9365.724ENSMAMG00000016889eif4bb9262.010Mastacembelus_armatus
ENSDARG00000010194eif4bb9984.848ENSMZEG00005026975eif4bb9962.777Maylandia_zebra
ENSDARG00000010194eif4bb5266.234ENSMAUG00000018343Eif4b9852.251Mesocricetus_auratus
ENSDARG00000010194eif4bb9956.863ENSMICG00000033915-9961.111Microcebus_murinus
ENSDARG00000010194eif4bb9951.802ENSMICG00000033942-10053.972Microcebus_murinus
ENSDARG00000010194eif4bb9852.006ENSMOCG00000018841-9950.386Microtus_ochrogaster
ENSDARG00000010194eif4bb6860.150ENSMOCG00000006053-9958.629Microtus_ochrogaster
ENSDARG00000010194eif4bb9855.958ENSMOCG00000015277-9953.704Microtus_ochrogaster
ENSDARG00000010194eif4bb9853.963ENSMOCG00000017700-9952.904Microtus_ochrogaster
ENSDARG00000010194eif4bb9658.347ENSMMOG00000004246eif4bb9968.182Mola_mola
ENSDARG00000010194eif4bb9856.515MGP_CAROLIEiJ_G0020335Eif4b9955.157Mus_caroli
ENSDARG00000010194eif4bb9855.958ENSMUSG00000058655Eif4b10061.818Mus_musculus
ENSDARG00000010194eif4bb9855.958MGP_SPRETEiJ_G0021228Eif4b9954.475Mus_spretus
ENSDARG00000010194eif4bb9956.907ENSMPUG00000006220EIF4B9955.316Mustela_putorius_furo
ENSDARG00000010194eif4bb9755.723ENSMLUG00000013021EIF4B9954.378Myotis_lucifugus
ENSDARG00000010194eif4bb10056.483ENSNGAG00000012353Eif4b10055.332Nannospalax_galili
ENSDARG00000010194eif4bb9962.084ENSNBRG00000015331eif4bb9765.913Neolamprologus_brichardi
ENSDARG00000010194eif4bb9859.387ENSNLEG00000027255-9860.759Nomascus_leucogenys
ENSDARG00000010194eif4bb9443.598ENSNLEG00000035400-8949.851Nomascus_leucogenys
ENSDARG00000010194eif4bb9956.166ENSNLEG00000017727EIF4B9762.195Nomascus_leucogenys
ENSDARG00000010194eif4bb10056.741ENSOPRG00000008447EIF4B10055.259Ochotona_princeps
ENSDARG00000010194eif4bb9750.680ENSODEG00000012941-9749.246Octodon_degus
ENSDARG00000010194eif4bb7655.234ENSODEG00000011370-9163.889Octodon_degus
ENSDARG00000010194eif4bb9765.292ENSONIG00000019380eif4bb9963.190Oreochromis_niloticus
ENSDARG00000010194eif4bb8171.351ENSOANG00000009940-6874.157Ornithorhynchus_anatinus
ENSDARG00000010194eif4bb9756.390ENSOCUG00000013484EIF4B9355.520Oryctolagus_cuniculus
ENSDARG00000010194eif4bb9683.871ENSORLG00000016502eif4bb9958.281Oryzias_latipes
ENSDARG00000010194eif4bb9161.416ENSORLG00015008020eif4bb8962.478Oryzias_latipes_hsok
ENSDARG00000010194eif4bb5179.675ENSOMEG00000000454eif4bb9958.193Oryzias_melastigma
ENSDARG00000010194eif4bb10056.119ENSOARG00000016759EIF4B10054.504Ovis_aries
ENSDARG00000010194eif4bb9744.391ENSPPAG00000030041-9843.339Pan_paniscus
ENSDARG00000010194eif4bb7767.192ENSPPAG00000029383-8467.803Pan_paniscus
ENSDARG00000010194eif4bb6962.736ENSPPAG00000030546-9562.085Pan_paniscus
ENSDARG00000010194eif4bb9955.982ENSPPRG00000008730EIF4B9954.977Panthera_pardus
ENSDARG00000010194eif4bb9955.982ENSPTIG00000014635EIF4B9954.977Panthera_tigris_altaica
ENSDARG00000010194eif4bb9752.308ENSPTRG00000043454-9757.895Pan_troglodytes
ENSDARG00000010194eif4bb9956.355ENSPTRG00000047145-9955.061Pan_troglodytes
ENSDARG00000010194eif4bb9954.423ENSPTRG00000040264-9360.723Pan_troglodytes
ENSDARG00000010194eif4bb9752.308ENSPTRG00000050351-9757.895Pan_troglodytes
ENSDARG00000010194eif4bb9254.605ENSPTRG00000043521-9655.685Pan_troglodytes
ENSDARG00000010194eif4bb9954.490ENSPTRG00000043800-9478.857Pan_troglodytes
ENSDARG00000010194eif4bb9956.278ENSPANG00000014458-9955.096Papio_anubis
ENSDARG00000010194eif4bb9949.744ENSPANG00000029637-9867.470Papio_anubis
ENSDARG00000010194eif4bb9955.422ENSPANG00000005737-9169.397Papio_anubis
ENSDARG00000010194eif4bb9746.688ENSPANG00000034874-6153.469Papio_anubis
ENSDARG00000010194eif4bb9764.798ENSPKIG00000015805eif4ba9665.070Paramormyrops_kingsleyae
ENSDARG00000010194eif4bb6155.256ENSPSIG00000017738EIF4B8055.085Pelodiscus_sinensis
ENSDARG00000010194eif4bb9954.217ENSPEMG00000016399Eif4b9951.326Peromyscus_maniculatus_bairdii
ENSDARG00000010194eif4bb6848.046ENSPMAG00000005947-5258.744Petromyzon_marinus
ENSDARG00000010194eif4bb9957.249ENSPCIG00000011212EIF4B9956.777Phascolarctos_cinereus
ENSDARG00000010194eif4bb9956.101ENSPPYG00000025848EIF4B9955.208Pongo_abelii
ENSDARG00000010194eif4bb8083.333ENSPCAG00000001759EIF4B8083.333Procavia_capensis
ENSDARG00000010194eif4bb9956.399ENSPCOG00000007039-9955.357Propithecus_coquereli
ENSDARG00000010194eif4bb9956.561ENSPVAG00000009362EIF4B9955.208Pteropus_vampyrus
ENSDARG00000010194eif4bb9962.139ENSPNYG00000006114eif4bb9962.777Pundamilia_nyererei
ENSDARG00000010194eif4bb10070.963ENSPNAG00000013294eif4bb10080.000Pygocentrus_nattereri
ENSDARG00000010194eif4bb9963.318ENSPNAG00000006684eif4ba9865.761Pygocentrus_nattereri
ENSDARG00000010194eif4bb9856.410ENSRNOG00000010103Eif4b9955.093Rattus_norvegicus
ENSDARG00000010194eif4bb9956.324ENSRBIG00000043823-9955.147Rhinopithecus_bieti
ENSDARG00000010194eif4bb7549.539ENSRBIG00000038114-9447.465Rhinopithecus_bieti
ENSDARG00000010194eif4bb9946.988ENSRBIG00000024635-6161.883Rhinopithecus_bieti
ENSDARG00000010194eif4bb9943.648ENSRBIG00000032876-5959.426Rhinopithecus_bieti
ENSDARG00000010194eif4bb9956.130ENSRROG00000033336-9955.030Rhinopithecus_roxellana
ENSDARG00000010194eif4bb9943.443ENSRROG00000034314-8469.231Rhinopithecus_roxellana
ENSDARG00000010194eif4bb9748.769ENSRROG00000045254-9947.343Rhinopithecus_roxellana
ENSDARG00000010194eif4bb6962.264ENSRROG00000028884-9874.854Rhinopithecus_roxellana
ENSDARG00000010194eif4bb9956.101ENSSBOG00000026444EIF4B9955.247Saimiri_boliviensis_boliviensis
ENSDARG00000010194eif4bb9740.879ENSSBOG00000032333-9640.696Saimiri_boliviensis_boliviensis
ENSDARG00000010194eif4bb9958.245ENSSHAG00000003682EIF4B9956.476Sarcophilus_harrisii
ENSDARG00000010194eif4bb9956.281ENSSFOG00015018808EIF4B9856.656Scleropages_formosus
ENSDARG00000010194eif4bb9859.729ENSSMAG00000007678eif4bb9961.136Scophthalmus_maximus
ENSDARG00000010194eif4bb10062.811ENSSLDG00000010210eif4bb9961.550Seriola_lalandi_dorsalis
ENSDARG00000010194eif4bb9851.976ENSSARG00000000838EIF4B9276.571Sorex_araneus
ENSDARG00000010194eif4bb9654.148ENSSPUG00000017451EIF4B9952.409Sphenodon_punctatus
ENSDARG00000010194eif4bb10056.692ENSSSCG00000032028-10054.769Sus_scrofa
ENSDARG00000010194eif4bb8457.393ENSTGUG00000003829EIF4B9659.125Taeniopygia_guttata
ENSDARG00000010194eif4bb9962.519ENSTNIG00000007192eif4bb9962.715Tetraodon_nigroviridis
ENSDARG00000010194eif4bb7377.576ENSTBEG00000005423EIF4B7977.143Tupaia_belangeri
ENSDARG00000010194eif4bb6277.528ENSTTRG00000002770EIF4B6277.528Tursiops_truncatus
ENSDARG00000010194eif4bb8251.573ENSUAMG00000017022EIF4B9648.983Ursus_americanus
ENSDARG00000010194eif4bb9956.889ENSUMAG00000009372EIF4B9955.932Ursus_maritimus
ENSDARG00000010194eif4bb9954.160ENSVPAG00000007999EIF4B9953.284Vicugna_pacos
ENSDARG00000010194eif4bb9950.901ENSVVUG00000016220-9948.989Vulpes_vulpes
ENSDARG00000010194eif4bb9954.416ENSXETG00000001829eif4b9955.455Xenopus_tropicalis
ENSDARG00000010194eif4bb8982.377ENSXMAG00000018673eif4bb9964.651Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001731formation of translation preinitiation complex21873635.IBAProcess
GO:0002181cytoplasmic translation21873635.IBAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0003743translation initiation factor activity21873635.IBAFunction
GO:0003743translation initiation factor activity-IEAFunction
GO:0005844polysome21873635.IBAComponent
GO:0006412translation-IEAProcess
GO:0006413translational initiation-IEAProcess
GO:0033592RNA strand annealing activity21873635.IBAFunction
GO:0034057RNA strand-exchange activity21873635.IBAFunction
GO:0043024ribosomal small subunit binding21873635.IBAFunction
GO:0097010eukaryotic translation initiation factor 4F complex assembly21873635.IBAProcess
GO:0097010eukaryotic translation initiation factor 4F complex assembly-IEAProcess

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