EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000010238 (Gene tree)
Gene ID: 406495
Gene Symbol: rbm22
Alias: fb37a01|fc62e03|fe05c04|wu:fb37a01|wu:fc62e03|wu:fe05c04|zgc:77910
Full Name: RNA binding motif protein 22
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 18645 bases
Position: chr21:33211306-33229950
Accession: ZDB-GENE-040426-2298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000004055	RRM_1	PF00076.22	1.9e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000003983	-	1874	-	ENSDARP00000004055	425 (aa)	-	Q6NZZ9

Gene Model

Click here to download ENSDARG00000010238's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000010238's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000010238	rbm22	100	84.742	ENSG00000086589	RBM22	100	89.785	Homo_sapiens
ENSDARG00000010238	rbm22	99	88.056	ENSAPOG00000010338	rbm22	99	88.290	Acanthochromis_polyacanthus
ENSDARG00000010238	rbm22	100	84.742	ENSAMEG00000004544	RBM22	100	84.507	Ailuropoda_melanoleuca
ENSDARG00000010238	rbm22	99	81.336	ENSACIG00000016372	rbm22	99	81.336	Amphilophus_citrinellus
ENSDARG00000010238	rbm22	99	88.056	ENSAOCG00000007179	rbm22	99	88.290	Amphiprion_ocellaris
ENSDARG00000010238	rbm22	99	88.056	ENSAPEG00000016689	rbm22	99	88.290	Amphiprion_percula
ENSDARG00000010238	rbm22	99	88.056	ENSATEG00000008286	rbm22	99	87.119	Anabas_testudineus
ENSDARG00000010238	rbm22	99	82.423	ENSAPLG00000016408	RBM22	99	82.423	Anas_platyrhynchos
ENSDARG00000010238	rbm22	100	82.201	ENSACAG00000014750	RBM22	100	84.075	Anolis_carolinensis
ENSDARG00000010238	rbm22	92	77.749	ENSANAG00000019688	-	100	77.494	Aotus_nancymaae
ENSDARG00000010238	rbm22	100	84.507	ENSANAG00000033743	-	100	84.272	Aotus_nancymaae
ENSDARG00000010238	rbm22	99	88.525	ENSACLG00000008863	rbm22	99	87.588	Astatotilapia_calliptera
ENSDARG00000010238	rbm22	99	90.824	ENSAMXG00000038080	rbm22	99	84.000	Astyanax_mexicanus
ENSDARG00000010238	rbm22	99	83.726	ENSAMXG00000018529	-	99	85.377	Astyanax_mexicanus
ENSDARG00000010238	rbm22	100	84.742	ENSBTAG00000030366	RBM22	100	84.507	Bos_taurus
ENSDARG00000010238	rbm22	96	51.442	WBGene00011722	rbm-22	77	59.365	Caenorhabditis_elegans
ENSDARG00000010238	rbm22	86	85.753	ENSCJAG00000013247	-	85	85.753	Callithrix_jacchus
ENSDARG00000010238	rbm22	100	84.507	ENSCJAG00000020963	RBM22	100	84.272	Callithrix_jacchus
ENSDARG00000010238	rbm22	100	84.346	ENSCAFG00000018082	RBM22	100	84.112	Canis_familiaris
ENSDARG00000010238	rbm22	100	84.742	ENSCAFG00020023671	RBM22	100	84.507	Canis_lupus_dingo
ENSDARG00000010238	rbm22	100	84.742	ENSCHIG00000015561	RBM22	100	84.507	Capra_hircus
ENSDARG00000010238	rbm22	88	73.670	ENSTSYG00000037586	-	100	73.670	Carlito_syrichta
ENSDARG00000010238	rbm22	100	84.742	ENSTSYG00000003939	-	100	84.507	Carlito_syrichta
ENSDARG00000010238	rbm22	92	81.519	ENSCAPG00000002598	RBM22	96	81.266	Cavia_aperea
ENSDARG00000010238	rbm22	100	84.742	ENSCPOG00000001946	RBM22	100	84.507	Cavia_porcellus
ENSDARG00000010238	rbm22	100	84.507	ENSCCAG00000033546	RBM22	100	84.272	Cebus_capucinus
ENSDARG00000010238	rbm22	100	84.742	ENSCATG00000042133	RBM22	100	84.507	Cercocebus_atys
ENSDARG00000010238	rbm22	100	62.441	ENSCLAG00000014221	-	94	62.911	Chinchilla_lanigera
ENSDARG00000010238	rbm22	100	67.972	ENSCLAG00000007106	-	100	68.075	Chinchilla_lanigera
ENSDARG00000010238	rbm22	100	84.742	ENSCLAG00000010842	-	100	84.507	Chinchilla_lanigera
ENSDARG00000010238	rbm22	93	86.432	ENSCSAG00000019006	-	93	87.945	Chlorocebus_sabaeus
ENSDARG00000010238	rbm22	100	83.568	ENSCHOG00000013522	-	100	83.333	Choloepus_hoffmanni
ENSDARG00000010238	rbm22	100	84.272	ENSCHOG00000001041	-	100	84.038	Choloepus_hoffmanni
ENSDARG00000010238	rbm22	70	89.562	ENSCHOG00000004192	-	98	89.384	Choloepus_hoffmanni
ENSDARG00000010238	rbm22	100	84.977	ENSCPBG00000010094	RBM22	100	84.742	Chrysemys_picta_bellii
ENSDARG00000010238	rbm22	98	63.270	ENSCING00000005843	zf(c3h)-12	99	61.374	Ciona_intestinalis
ENSDARG00000010238	rbm22	98	62.295	ENSCSAVG00000009145	-	99	61.737	Ciona_savignyi
ENSDARG00000010238	rbm22	100	84.742	ENSCANG00000025232	RBM22	100	84.507	Colobus_angolensis_palliatus
ENSDARG00000010238	rbm22	100	84.742	ENSCGRG00001015110	Rbm22	100	84.507	Cricetulus_griseus_chok1gshd
ENSDARG00000010238	rbm22	99	80.142	ENSCGRG00000011751	Rbm22	99	79.669	Cricetulus_griseus_crigri
ENSDARG00000010238	rbm22	99	88.124	ENSCSEG00000010790	rbm22	98	88.361	Cynoglossus_semilaevis
ENSDARG00000010238	rbm22	99	87.972	ENSCVAG00000010670	rbm22	99	88.208	Cyprinodon_variegatus
ENSDARG00000010238	rbm22	100	84.742	ENSDNOG00000011166	RBM22	100	84.507	Dasypus_novemcinctus
ENSDARG00000010238	rbm22	100	65.493	ENSDORG00000005329	Rbm22	100	65.258	Dipodomys_ordii
ENSDARG00000010238	rbm22	90	59.845	FBgn0037220	CG14641	75	67.834	Drosophila_melanogaster
ENSDARG00000010238	rbm22	92	87.234	ENSEBUG00000016742	-	99	87.234	Eptatretus_burgeri
ENSDARG00000010238	rbm22	100	84.742	ENSEASG00005002681	RBM22	100	84.507	Equus_asinus_asinus
ENSDARG00000010238	rbm22	100	75.745	ENSECAG00000014940	RBM22	84	87.945	Equus_caballus
ENSDARG00000010238	rbm22	100	83.333	ENSEEUG00000005638	-	100	82.629	Erinaceus_europaeus
ENSDARG00000010238	rbm22	100	68.075	ENSEEUG00000009778	-	100	67.840	Erinaceus_europaeus
ENSDARG00000010238	rbm22	99	85.613	ENSELUG00000001106	rbm22	96	83.491	Esox_lucius
ENSDARG00000010238	rbm22	100	84.742	ENSFCAG00000018845	RBM22	100	84.507	Felis_catus
ENSDARG00000010238	rbm22	100	84.742	ENSFALG00000008051	RBM22	100	84.507	Ficedula_albicollis
ENSDARG00000010238	rbm22	100	84.742	ENSFDAG00000020067	RBM22	100	84.507	Fukomys_damarensis
ENSDARG00000010238	rbm22	99	88.000	ENSFHEG00000014032	rbm22	99	88.235	Fundulus_heteroclitus
ENSDARG00000010238	rbm22	99	86.493	ENSGMOG00000010186	rbm22	100	87.204	Gadus_morhua
ENSDARG00000010238	rbm22	100	85.211	ENSGALG00000004555	RBM22	100	84.977	Gallus_gallus
ENSDARG00000010238	rbm22	99	87.324	ENSGAFG00000008621	rbm22	99	87.736	Gambusia_affinis
ENSDARG00000010238	rbm22	99	86.854	ENSGACG00000018027	rbm22	99	87.559	Gasterosteus_aculeatus
ENSDARG00000010238	rbm22	100	85.211	ENSGAGG00000024305	RBM22	100	84.977	Gopherus_agassizii
ENSDARG00000010238	rbm22	100	84.742	ENSGGOG00000012947	RBM22	100	84.507	Gorilla_gorilla
ENSDARG00000010238	rbm22	99	88.525	ENSHBUG00000002941	rbm22	99	87.588	Haplochromis_burtoni
ENSDARG00000010238	rbm22	100	84.742	ENSHGLG00000008488	RBM22	100	84.507	Heterocephalus_glaber_female
ENSDARG00000010238	rbm22	98	84.450	ENSHGLG00100006872	RBM22	99	84.211	Heterocephalus_glaber_male
ENSDARG00000010238	rbm22	85	88.398	ENSHCOG00000016334	rbm22	92	88.187	Hippocampus_comes
ENSDARG00000010238	rbm22	99	92.000	ENSIPUG00000019751	rbm22	99	92.000	Ictalurus_punctatus
ENSDARG00000010238	rbm22	100	70.657	ENSSTOG00000027197	RBM22	100	69.249	Ictidomys_tridecemlineatus
ENSDARG00000010238	rbm22	99	71.158	ENSSTOG00000029346	-	97	72.577	Ictidomys_tridecemlineatus
ENSDARG00000010238	rbm22	100	84.742	ENSJJAG00000009565	Rbm22	100	84.507	Jaculus_jaculus
ENSDARG00000010238	rbm22	99	88.056	ENSKMAG00000004354	rbm22	99	88.290	Kryptolebias_marmoratus
ENSDARG00000010238	rbm22	99	88.810	ENSLBEG00000027750	rbm22	88	89.048	Labrus_bergylta
ENSDARG00000010238	rbm22	99	87.294	ENSLOCG00000010989	rbm22	99	87.294	Lepisosteus_oculatus
ENSDARG00000010238	rbm22	100	84.742	ENSLAFG00000006638	RBM22	100	84.507	Loxodonta_africana
ENSDARG00000010238	rbm22	100	84.742	ENSMFAG00000004034	RBM22	100	84.507	Macaca_fascicularis
ENSDARG00000010238	rbm22	100	84.742	ENSMMUG00000020683	RBM22	100	84.507	Macaca_mulatta
ENSDARG00000010238	rbm22	100	84.742	ENSMNEG00000035500	RBM22	100	84.507	Macaca_nemestrina
ENSDARG00000010238	rbm22	100	84.742	ENSMLEG00000034825	RBM22	100	84.507	Mandrillus_leucophaeus
ENSDARG00000010238	rbm22	99	88.525	ENSMAMG00000007370	rbm22	99	88.759	Mastacembelus_armatus
ENSDARG00000010238	rbm22	99	88.525	ENSMZEG00005013001	rbm22	99	87.588	Maylandia_zebra
ENSDARG00000010238	rbm22	100	85.211	ENSMGAG00000006298	RBM22	100	84.977	Meleagris_gallopavo
ENSDARG00000010238	rbm22	100	84.742	ENSMAUG00000001133	Rbm22	100	84.507	Mesocricetus_auratus
ENSDARG00000010238	rbm22	100	84.742	ENSMICG00000033712	RBM22	100	84.507	Microcebus_murinus
ENSDARG00000010238	rbm22	100	79.108	ENSMOCG00000018311	Rbm22	100	78.873	Microtus_ochrogaster
ENSDARG00000010238	rbm22	99	86.885	ENSMMOG00000003192	rbm22	99	87.119	Mola_mola
ENSDARG00000010238	rbm22	99	77.647	ENSMODG00000006398	-	99	78.118	Monodelphis_domestica
ENSDARG00000010238	rbm22	100	84.038	ENSMODG00000009574	-	100	83.803	Monodelphis_domestica
ENSDARG00000010238	rbm22	99	87.822	ENSMALG00000013964	rbm22	99	88.056	Monopterus_albus
ENSDARG00000010238	rbm22	100	84.742	MGP_CAROLIEiJ_G0022307	Rbm22	100	84.507	Mus_caroli
ENSDARG00000010238	rbm22	100	84.742	ENSMUSG00000024604	Rbm22	100	84.507	Mus_musculus
ENSDARG00000010238	rbm22	100	84.742	MGP_PahariEiJ_G0019037	Rbm22	100	84.507	Mus_pahari
ENSDARG00000010238	rbm22	100	84.742	MGP_SPRETEiJ_G0023219	Rbm22	100	84.507	Mus_spretus
ENSDARG00000010238	rbm22	100	84.742	ENSMPUG00000013760	RBM22	100	84.507	Mustela_putorius_furo
ENSDARG00000010238	rbm22	100	84.742	ENSMLUG00000009040	RBM22	100	84.507	Myotis_lucifugus
ENSDARG00000010238	rbm22	100	82.629	ENSMLUG00000003461	-	100	82.394	Myotis_lucifugus
ENSDARG00000010238	rbm22	100	84.742	ENSNGAG00000018233	Rbm22	100	84.507	Nannospalax_galili
ENSDARG00000010238	rbm22	89	87.173	ENSNBRG00000010458	rbm22	95	86.126	Neolamprologus_brichardi
ENSDARG00000010238	rbm22	100	84.742	ENSNLEG00000010397	-	100	84.507	Nomascus_leucogenys
ENSDARG00000010238	rbm22	100	76.526	ENSMEUG00000009348	-	100	76.526	Notamacropus_eugenii
ENSDARG00000010238	rbm22	83	71.617	ENSMEUG00000001573	-	79	71.617	Notamacropus_eugenii
ENSDARG00000010238	rbm22	100	84.977	ENSOPRG00000008481	-	100	84.742	Ochotona_princeps
ENSDARG00000010238	rbm22	100	65.962	ENSOPRG00000016612	-	100	65.493	Ochotona_princeps
ENSDARG00000010238	rbm22	100	83.803	ENSODEG00000005016	RBM22	100	83.568	Octodon_degus
ENSDARG00000010238	rbm22	99	88.732	ENSONIG00000013049	rbm22	99	87.089	Oreochromis_niloticus
ENSDARG00000010238	rbm22	100	83.217	ENSOANG00000002314	RBM22	100	82.984	Ornithorhynchus_anatinus
ENSDARG00000010238	rbm22	100	84.742	ENSOCUG00000011532	RBM22	100	84.507	Oryctolagus_cuniculus
ENSDARG00000010238	rbm22	99	86.183	ENSORLG00000004975	rbm22	99	86.118	Oryzias_latipes
ENSDARG00000010238	rbm22	99	86.183	ENSORLG00020012969	rbm22	99	86.118	Oryzias_latipes_hni
ENSDARG00000010238	rbm22	99	86.183	ENSORLG00015022508	rbm22	99	86.118	Oryzias_latipes_hsok
ENSDARG00000010238	rbm22	99	85.948	ENSOMEG00000004904	rbm22	99	86.417	Oryzias_melastigma
ENSDARG00000010238	rbm22	100	79.859	ENSOGAG00000011086	RBM22	100	79.625	Otolemur_garnettii
ENSDARG00000010238	rbm22	100	83.178	ENSOARG00000007633	RBM22	100	82.944	Ovis_aries
ENSDARG00000010238	rbm22	100	84.742	ENSPPAG00000034432	RBM22	100	84.507	Pan_paniscus
ENSDARG00000010238	rbm22	100	84.742	ENSPPRG00000011577	RBM22	100	84.507	Panthera_pardus
ENSDARG00000010238	rbm22	100	84.742	ENSPTIG00000004453	RBM22	100	84.507	Panthera_tigris_altaica
ENSDARG00000010238	rbm22	100	84.742	ENSPTRG00000017423	RBM22	100	84.507	Pan_troglodytes
ENSDARG00000010238	rbm22	100	84.742	ENSPANG00000011297	RBM22	100	84.507	Papio_anubis
ENSDARG00000010238	rbm22	85	84.848	ENSPKIG00000019326	rbm22	83	86.538	Paramormyrops_kingsleyae
ENSDARG00000010238	rbm22	99	86.588	ENSPKIG00000010315	rbm22	99	86.588	Paramormyrops_kingsleyae
ENSDARG00000010238	rbm22	100	85.211	ENSPSIG00000012818	RBM22	100	84.977	Pelodiscus_sinensis
ENSDARG00000010238	rbm22	99	84.964	ENSPMGG00000017638	rbm22	100	85.442	Periophthalmus_magnuspinnatus
ENSDARG00000010238	rbm22	100	84.507	ENSPEMG00000001753	Rbm22	100	84.272	Peromyscus_maniculatus_bairdii
ENSDARG00000010238	rbm22	78	63.401	ENSPMAG00000007317	-	99	66.571	Petromyzon_marinus
ENSDARG00000010238	rbm22	100	71.831	ENSPCIG00000015088	RBM22	100	71.596	Phascolarctos_cinereus
ENSDARG00000010238	rbm22	99	86.353	ENSPFOG00000005625	rbm22	99	86.761	Poecilia_formosa
ENSDARG00000010238	rbm22	99	86.588	ENSPLAG00000006344	rbm22	99	86.998	Poecilia_latipinna
ENSDARG00000010238	rbm22	99	82.353	ENSPMEG00000007992	rbm22	99	86.082	Poecilia_mexicana
ENSDARG00000010238	rbm22	99	87.294	ENSPREG00000003546	rbm22	99	87.707	Poecilia_reticulata
ENSDARG00000010238	rbm22	100	84.742	ENSPPYG00000015955	RBM22	100	84.507	Pongo_abelii
ENSDARG00000010238	rbm22	86	73.425	ENSPCAG00000015091	RBM22	97	73.425	Procavia_capensis
ENSDARG00000010238	rbm22	100	84.742	ENSPVAG00000014231	RBM22	100	84.507	Pteropus_vampyrus
ENSDARG00000010238	rbm22	86	86.301	ENSPNYG00000000380	rbm22	95	86.301	Pundamilia_nyererei
ENSDARG00000010238	rbm22	99	89.387	ENSPNAG00000002687	rbm22	99	89.387	Pygocentrus_nattereri
ENSDARG00000010238	rbm22	99	85.142	ENSPNAG00000010001	-	99	87.028	Pygocentrus_nattereri
ENSDARG00000010238	rbm22	100	84.272	ENSRNOG00000019235	Rbm22	100	84.038	Rattus_norvegicus
ENSDARG00000010238	rbm22	100	84.742	ENSRBIG00000041683	RBM22	100	84.507	Rhinopithecus_bieti
ENSDARG00000010238	rbm22	100	84.742	ENSRROG00000041637	RBM22	100	84.507	Rhinopithecus_roxellana
ENSDARG00000010238	rbm22	100	84.272	ENSSBOG00000035400	-	100	84.038	Saimiri_boliviensis_boliviensis
ENSDARG00000010238	rbm22	100	83.803	ENSSHAG00000017734	-	100	83.568	Sarcophilus_harrisii
ENSDARG00000010238	rbm22	99	87.765	ENSSFOG00015014955	rbm22	99	87.765	Scleropages_formosus
ENSDARG00000010238	rbm22	99	84.038	ENSSFOG00015022259	rbm22	99	83.491	Scleropages_formosus
ENSDARG00000010238	rbm22	99	89.227	ENSSMAG00000002921	rbm22	99	88.290	Scophthalmus_maximus
ENSDARG00000010238	rbm22	99	88.290	ENSSDUG00000003846	rbm22	99	88.525	Seriola_dumerili
ENSDARG00000010238	rbm22	99	88.290	ENSSLDG00000003804	rbm22	99	88.525	Seriola_lalandi_dorsalis
ENSDARG00000010238	rbm22	52	96.296	ENSSARG00000003205	-	53	96.296	Sorex_araneus
ENSDARG00000010238	rbm22	100	82.904	ENSSPUG00000003986	RBM22	100	84.543	Sphenodon_punctatus
ENSDARG00000010238	rbm22	99	87.822	ENSSPAG00000000383	rbm22	99	88.056	Stegastes_partitus
ENSDARG00000010238	rbm22	100	84.507	ENSSSCG00000023231	RBM22	100	84.272	Sus_scrofa
ENSDARG00000010238	rbm22	100	84.742	ENSTGUG00000000850	RBM22	100	84.507	Taeniopygia_guttata
ENSDARG00000010238	rbm22	99	85.681	ENSTRUG00000004724	rbm22	99	85.915	Takifugu_rubripes
ENSDARG00000010238	rbm22	100	72.300	ENSTBEG00000005617	RBM22	100	72.066	Tupaia_belangeri
ENSDARG00000010238	rbm22	100	84.742	ENSTTRG00000012778	RBM22	100	84.507	Tursiops_truncatus
ENSDARG00000010238	rbm22	100	84.742	ENSUAMG00000025133	RBM22	100	84.507	Ursus_americanus
ENSDARG00000010238	rbm22	100	84.742	ENSUMAG00000003651	RBM22	100	84.507	Ursus_maritimus
ENSDARG00000010238	rbm22	100	84.742	ENSVVUG00000007193	RBM22	100	84.507	Vulpes_vulpes
ENSDARG00000010238	rbm22	99	80.806	ENSXETG00000020435	rbm22	99	81.280	Xenopus_tropicalis
ENSDARG00000010238	rbm22	99	83.294	ENSXCOG00000003316	rbm22	99	83.529	Xiphophorus_couchianus
ENSDARG00000010238	rbm22	99	87.529	ENSXMAG00000008681	rbm22	99	87.765	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000387	spliceosomal snRNP assembly	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000974	Prp19 complex	21873635.	IBA	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	17045351.	IDA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0017070	U6 snRNA binding	21873635.	IBA	Function
GO:0017070	U6 snRNA binding	-	ISS	Function
GO:0033120	positive regulation of RNA splicing	-	ISS	Process
GO:0036002	pre-mRNA binding	21873635.	IBA	Function
GO:0036002	pre-mRNA binding	-	ISS	Function
GO:0043009	chordate embryonic development	20013661.	IMP	Process
GO:0045292	mRNA cis splicing, via spliceosome	-	ISS	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0071006	U2-type catalytic step 1 spliceosome	21873635.	IBA	Component
GO:0071007	U2-type catalytic step 2 spliceosome	21873635.	IBA	Component