EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000010710 (Gene tree)
Gene ID
541389
Gene Symbol
msi1
Alias
fb40b12|wu:fb40b12|zgc:103751
Full Name
musashi RNA-binding protein 1
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Plus strand
Length
39751 bases
Position
chr8:39607466-39647216
Accession
ZDB-GENE-050320-86
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000088198RRM_1PF00076.227.7e-2712
ENSDARP00000088198RRM_1PF00076.227.7e-2722
ENSDARP00000121659RRM_1PF00076.221.2e-1411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000134822-644-ENSDARP00000121659214 (aa)-B0S573
ENSDART00000138380-719--- (aa)--
ENSDART00000144293-807-ENSDARP00000119647180 (aa)-F1R5R9
ENSDART00000097427-2176-ENSDARP00000088198297 (aa)-F1R9K5
Gene Model
Click here to download ENSDARG00000010710's gene model file
Pathways
Pathway IDPathway NameSource
dre03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000010710's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000010710msi15537.195ENSDARG00000059351hnrnpa39035.632
ENSDARG00000010710msi19959.773ENSDARG00000033901msi2a9560.340
ENSDARG00000010710msi19580.734ENSDARG00000032614msi2b10090.164
ENSDARG00000010710msi15056.098ENSDARG00000007960hnrnpaba6449.558
ENSDARG00000010710msi15746.988ENSDARG00000059246hnrnpd7146.988
ENSDARG00000010710msi15246.753ENSDARG00000003429hnrnpdl8137.349
ENSDARG00000010710msi17990.588ENSDARG00000102015CABZ01037298.19181.944
ENSDARG00000010710msi15436.646ENSDARG00000036161hnrnpa0l7834.783
ENSDARG00000010710msi15238.462ENSDARG00000036162hnrnpa0b7935.374
ENSDARG00000010710msi15637.879ENSDARG00000004452tardbpl5935.714
ENSDARG00000010710msi18341.026ENSDARG00000070846dazap19341.026
ENSDARG00000010710msi15245.455ENSDARG00000099865hnrnpabb7641.333
ENSDARG00000010710msi15337.107ENSDARG00000089302hnrnpa0a6041.667
ENSDARG00000010710msi15437.975ENSDARG00000011020hnrnpa1a5936.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000010710msi110085.022ENSG00000135097MSI19987.500Homo_sapiens
ENSDARG00000010710msi110092.991ENSAPOG00000003191MSI19485.079Acanthochromis_polyacanthus
ENSDARG00000010710msi110095.327ENSAPOG00000023458-9489.206Acanthochromis_polyacanthus
ENSDARG00000010710msi19284.264ENSAMEG00000013302MSI110067.590Ailuropoda_melanoleuca
ENSDARG00000010710msi19590.813ENSACIG00000017754-7887.119Amphilophus_citrinellus
ENSDARG00000010710msi19988.591ENSAOCG00000009031-9588.591Amphiprion_ocellaris
ENSDARG00000010710msi110092.991ENSAOCG00000003804MSI19485.079Amphiprion_ocellaris
ENSDARG00000010710msi110095.327ENSAPEG00000006857-7989.206Amphiprion_percula
ENSDARG00000010710msi110092.991ENSAPEG00000003245MSI19485.079Amphiprion_percula
ENSDARG00000010710msi110084.332ENSATEG00000023779-9384.277Anabas_testudineus
ENSDARG00000010710msi110095.327ENSATEG00000017059MSI19589.524Anabas_testudineus
ENSDARG00000010710msi110084.889ENSACAG00000002762MSI19981.595Anolis_carolinensis
ENSDARG00000010710msi110085.022ENSANAG00000027151MSI19881.402Aotus_nancymaae
ENSDARG00000010710msi19287.310ENSANAG00000027901-8887.310Aotus_nancymaae
ENSDARG00000010710msi110094.860ENSACLG00000000117-10089.206Astatotilapia_calliptera
ENSDARG00000010710msi110092.991ENSACLG00000011230MSI19485.397Astatotilapia_calliptera
ENSDARG00000010710msi110097.664ENSAMXG00000038960msi17596.622Astyanax_mexicanus
ENSDARG00000010710msi19986.408ENSBTAG00000009800MSI110086.408Bos_taurus
ENSDARG00000010710msi19986.408ENSCJAG00000008578MSI19881.402Callithrix_jacchus
ENSDARG00000010710msi110084.581ENSCAFG00000010283MSI19881.098Canis_familiaris
ENSDARG00000010710msi110085.022ENSCAFG00020020585MSI110082.315Canis_lupus_dingo
ENSDARG00000010710msi110081.466ENSCHIG00000024304MSI19880.665Capra_hircus
ENSDARG00000010710msi110085.022ENSTSYG00000033949MSI19581.346Carlito_syrichta
ENSDARG00000010710msi110085.022ENSCAPG00000003919MSI18973.163Cavia_aperea
ENSDARG00000010710msi110085.022ENSCPOG00000012361MSI110081.402Cavia_porcellus
ENSDARG00000010710msi110085.022ENSCCAG00000035567MSI19881.402Cebus_capucinus
ENSDARG00000010710msi110085.022ENSCATG00000030019MSI19883.648Cercocebus_atys
ENSDARG00000010710msi110085.022ENSCLAG00000011329MSI110081.402Chinchilla_lanigera
ENSDARG00000010710msi18686.413ENSCSAG00000002265MSI18786.413Chlorocebus_sabaeus
ENSDARG00000010710msi110088.889ENSCPBG00000011349MSI110083.912Chrysemys_picta_bellii
ENSDARG00000010710msi110085.022ENSCANG00000040651MSI110081.402Colobus_angolensis_palliatus
ENSDARG00000010710msi110085.022ENSCGRG00001018883Msi19881.402Cricetulus_griseus_chok1gshd
ENSDARG00000010710msi110085.022ENSCGRG00000002191Msi17281.402Cricetulus_griseus_crigri
ENSDARG00000010710msi110092.523ENSCSEG00000005834-9485.079Cynoglossus_semilaevis
ENSDARG00000010710msi19989.865ENSCSEG00000011032MSI110089.865Cynoglossus_semilaevis
ENSDARG00000010710msi110092.523ENSCSEG00000008352-9493.243Cynoglossus_semilaevis
ENSDARG00000010710msi110094.860ENSCVAG00000009100MSI19494.257Cyprinodon_variegatus
ENSDARG00000010710msi18070.930ENSCVAG00000017463-8965.596Cyprinodon_variegatus
ENSDARG00000010710msi19290.355ENSDNOG00000005713MSI19178.413Dasypus_novemcinctus
ENSDARG00000010710msi110085.022ENSDORG00000005610Msi19381.402Dipodomys_ordii
ENSDARG00000010710msi110080.176ENSETEG00000004756MSI110078.049Echinops_telfairi
ENSDARG00000010710msi19986.408ENSEASG00005004736MSI19886.408Equus_asinus_asinus
ENSDARG00000010710msi19986.408ENSECAG00000017526MSI19881.402Equus_caballus
ENSDARG00000010710msi110085.047ENSELUG00000023280-10085.113Esox_lucius
ENSDARG00000010710msi110089.427ENSELUG00000023219MSI19282.388Esox_lucius
ENSDARG00000010710msi19986.408ENSFCAG00000011007MSI19881.402Felis_catus
ENSDARG00000010710msi110088.426ENSFALG00000007574MSI110084.667Ficedula_albicollis
ENSDARG00000010710msi110084.581ENSFDAG00000019586MSI110081.098Fukomys_damarensis
ENSDARG00000010710msi110092.991ENSFHEG00000003560-9690.541Fundulus_heteroclitus
ENSDARG00000010710msi110094.860ENSFHEG00000022446MSI19488.889Fundulus_heteroclitus
ENSDARG00000010710msi110090.411ENSGMOG00000017838-9075.312Gadus_morhua
ENSDARG00000010710msi110092.991ENSGMOG00000001006MSI19485.714Gadus_morhua
ENSDARG00000010710msi110088.426ENSGALG00000007227MSI19675.148Gallus_gallus
ENSDARG00000010710msi19978.114ENSGAFG00000005860-9578.114Gambusia_affinis
ENSDARG00000010710msi110091.589ENSGAFG00000021522MSI19484.127Gambusia_affinis
ENSDARG00000010710msi110093.925ENSGACG00000012679MSI19492.230Gasterosteus_aculeatus
ENSDARG00000010710msi110086.283ENSGACG00000008674-9476.453Gasterosteus_aculeatus
ENSDARG00000010710msi110088.889ENSGAGG00000016037MSI19489.262Gopherus_agassizii
ENSDARG00000010710msi110085.022ENSGGOG00000010328MSI19982.109Gorilla_gorilla
ENSDARG00000010710msi110094.860ENSHBUG00000011841-9489.206Haplochromis_burtoni
ENSDARG00000010710msi110092.991ENSHBUG00000021921MSI19485.397Haplochromis_burtoni
ENSDARG00000010710msi110084.581ENSHGLG00000012782MSI19881.098Heterocephalus_glaber_female
ENSDARG00000010710msi110084.581ENSHGLG00100016848MSI110081.098Heterocephalus_glaber_male
ENSDARG00000010710msi110090.654ENSHCOG00000012019MSI110088.851Hippocampus_comes
ENSDARG00000010710msi110093.925ENSHCOG00000012067-8993.243Hippocampus_comes
ENSDARG00000010710msi110096.729ENSIPUG00000001976msi19995.946Ictalurus_punctatus
ENSDARG00000010710msi110085.022ENSSTOG00000009799MSI110082.315Ictidomys_tridecemlineatus
ENSDARG00000010710msi110076.211ENSJJAG00000010643-9475.081Jaculus_jaculus
ENSDARG00000010710msi110085.022ENSJJAG00000010463Msi19882.663Jaculus_jaculus
ENSDARG00000010710msi110093.458ENSKMAG00000011251MSI19488.254Kryptolebias_marmoratus
ENSDARG00000010710msi19990.203ENSKMAG00000019877-10090.203Kryptolebias_marmoratus
ENSDARG00000010710msi110092.056ENSLBEG00000001375-9484.762Labrus_bergylta
ENSDARG00000010710msi110095.327ENSLBEG00000008789MSI19494.932Labrus_bergylta
ENSDARG00000010710msi19982.515ENSLACG00000018287MSI110082.515Latimeria_chalumnae
ENSDARG00000010710msi19976.645ENSLAFG00000009412MSI110076.645Loxodonta_africana
ENSDARG00000010710msi110085.022ENSMFAG00000001798MSI110081.402Macaca_fascicularis
ENSDARG00000010710msi110085.022ENSMMUG00000031527MSI19781.402Macaca_mulatta
ENSDARG00000010710msi19986.408ENSMNEG00000040034MSI19886.408Macaca_nemestrina
ENSDARG00000010710msi110085.022ENSMLEG00000003921MSI110081.402Mandrillus_leucophaeus
ENSDARG00000010710msi110094.393ENSMAMG00000002279MSI19488.254Mastacembelus_armatus
ENSDARG00000010710msi110092.523ENSMAMG00000018426-9589.865Mastacembelus_armatus
ENSDARG00000010710msi110092.991ENSMZEG00005026892MSI19485.397Maylandia_zebra
ENSDARG00000010710msi110094.860ENSMZEG00005000340-9494.932Maylandia_zebra
ENSDARG00000010710msi17192.053ENSMGAG00000016518-10092.308Meleagris_gallopavo
ENSDARG00000010710msi18190.230ENSMAUG00000016820Msi110090.230Mesocricetus_auratus
ENSDARG00000010710msi110085.022ENSMICG00000033181MSI19882.353Microcebus_murinus
ENSDARG00000010710msi110084.581ENSMOCG00000002286Msi19881.098Microtus_ochrogaster
ENSDARG00000010710msi19987.838ENSMMOG00000010492MSI19687.838Mola_mola
ENSDARG00000010710msi19990.541ENSMMOG00000012265-9690.541Mola_mola
ENSDARG00000010710msi19956.798ENSMODG00000003189-10056.798Monodelphis_domestica
ENSDARG00000010710msi110094.860ENSMALG00000017889MSI19592.131Monopterus_albus
ENSDARG00000010710msi110091.589ENSMALG00000001426-10089.527Monopterus_albus
ENSDARG00000010710msi110084.141MGP_CAROLIEiJ_G0027626Msi19888.931Mus_caroli
ENSDARG00000010710msi110088.426ENSMUSG00000054256Msi19888.931Mus_musculus
ENSDARG00000010710msi110087.963MGP_PahariEiJ_G0024206Msi19888.550Mus_pahari
ENSDARG00000010710msi110084.141MGP_SPRETEiJ_G0028624Msi19888.931Mus_spretus
ENSDARG00000010710msi110085.022ENSMPUG00000003168MSI110082.315Mustela_putorius_furo
ENSDARG00000010710msi110071.795ENSMLUG00000010313MSI110072.537Myotis_lucifugus
ENSDARG00000010710msi110085.022ENSNGAG00000014508Msi19181.402Nannospalax_galili
ENSDARG00000010710msi19281.313ENSNBRG00000018012MSI19975.000Neolamprologus_brichardi
ENSDARG00000010710msi110094.860ENSNBRG00000000841-9494.932Neolamprologus_brichardi
ENSDARG00000010710msi110071.366ENSNLEG00000015636MSI110071.951Nomascus_leucogenys
ENSDARG00000010710msi110067.401ENSMEUG00000015759MSI110060.976Notamacropus_eugenii
ENSDARG00000010710msi110075.771ENSOPRG00000016879MSI110074.286Ochotona_princeps
ENSDARG00000010710msi110085.022ENSODEG00000006328MSI110081.402Octodon_degus
ENSDARG00000010710msi19997.059ENSONIG00000011182MSI19489.206Oreochromis_niloticus
ENSDARG00000010710msi110087.665ENSONIG00000019452-9482.012Oreochromis_niloticus
ENSDARG00000010710msi110085.022ENSOCUG00000027716MSI110082.315Oryctolagus_cuniculus
ENSDARG00000010710msi110095.327ENSORLG00000019978-9394.932Oryzias_latipes
ENSDARG00000010710msi110092.056ENSORLG00000029593MSI19982.667Oryzias_latipes
ENSDARG00000010710msi110095.327ENSORLG00020001208-6789.206Oryzias_latipes_hni
ENSDARG00000010710msi110092.056ENSORLG00020008266MSI19989.527Oryzias_latipes_hni
ENSDARG00000010710msi110092.056ENSORLG00015003916MSI19989.527Oryzias_latipes_hsok
ENSDARG00000010710msi110095.327ENSORLG00015013672-7194.932Oryzias_latipes_hsok
ENSDARG00000010710msi110092.056ENSOMEG00000002272-10083.000Oryzias_melastigma
ENSDARG00000010710msi110095.327ENSOMEG00000017536MSI110090.354Oryzias_melastigma
ENSDARG00000010710msi110083.913ENSOGAG00000003847MSI19880.665Otolemur_garnettii
ENSDARG00000010710msi110081.140ENSOARG00000012097MSI110078.723Ovis_aries
ENSDARG00000010710msi110085.022ENSPPAG00000043073MSI110081.402Pan_paniscus
ENSDARG00000010710msi110085.022ENSPPRG00000000370MSI19881.402Panthera_pardus
ENSDARG00000010710msi110085.022ENSPTIG00000008913MSI110082.315Panthera_tigris_altaica
ENSDARG00000010710msi110085.022ENSPTRG00000005531MSI19883.648Pan_troglodytes
ENSDARG00000010710msi110085.022ENSPANG00000006335MSI19881.098Papio_anubis
ENSDARG00000010710msi110092.991ENSPKIG00000023575-9486.667Paramormyrops_kingsleyae
ENSDARG00000010710msi110093.458ENSPKIG00000016497MSI19492.230Paramormyrops_kingsleyae
ENSDARG00000010710msi15283.168ENSPSIG00000016295-9386.957Pelodiscus_sinensis
ENSDARG00000010710msi18775.109ENSPSIG00000009621-10075.109Pelodiscus_sinensis
ENSDARG00000010710msi110084.112ENSPSIG00000011608-9380.635Pelodiscus_sinensis
ENSDARG00000010710msi19593.993ENSPMGG00000000514MSI19793.993Periophthalmus_magnuspinnatus
ENSDARG00000010710msi19972.667ENSPMGG00000007743-9072.667Periophthalmus_magnuspinnatus
ENSDARG00000010710msi110084.581ENSPEMG00000010491Msi19381.098Peromyscus_maniculatus_bairdii
ENSDARG00000010710msi110092.523ENSPFOG00000008319-8184.762Poecilia_formosa
ENSDARG00000010710msi110095.327ENSPFOG00000013113MSI19489.206Poecilia_formosa
ENSDARG00000010710msi110092.523ENSPLAG00000012431-9482.085Poecilia_latipinna
ENSDARG00000010710msi110095.327ENSPLAG00000014025-9489.206Poecilia_latipinna
ENSDARG00000010710msi110095.327ENSPMEG00000012796MSI19494.932Poecilia_mexicana
ENSDARG00000010710msi110091.589ENSPMEG00000007025-9382.943Poecilia_mexicana
ENSDARG00000010710msi19990.878ENSPREG00000021416-9490.878Poecilia_reticulata
ENSDARG00000010710msi18489.604ENSPREG00000014574-10089.604Poecilia_reticulata
ENSDARG00000010710msi110085.022ENSPPYG00000005027MSI19881.402Pongo_abelii
ENSDARG00000010710msi19290.355ENSPCAG00000002300MSI17290.355Procavia_capensis
ENSDARG00000010710msi110085.022ENSPCOG00000017341MSI19882.353Propithecus_coquereli
ENSDARG00000010710msi19966.463ENSPVAG00000002225MSI110066.463Pteropus_vampyrus
ENSDARG00000010710msi110092.991ENSPNYG00000004379MSI19485.397Pundamilia_nyererei
ENSDARG00000010710msi110094.860ENSPNYG00000002529-9489.206Pundamilia_nyererei
ENSDARG00000010710msi110097.664ENSPNAG00000019337msi18996.284Pygocentrus_nattereri
ENSDARG00000010710msi110084.581ENSRNOG00000001156Msi110081.994Rattus_norvegicus
ENSDARG00000010710msi110085.022ENSRBIG00000036889MSI110082.315Rhinopithecus_bieti
ENSDARG00000010710msi110085.022ENSRROG00000041076MSI19381.402Rhinopithecus_roxellana
ENSDARG00000010710msi110085.022ENSSBOG00000030259MSI19981.402Saimiri_boliviensis_boliviensis
ENSDARG00000010710msi110070.870ENSSHAG00000006834MSI110071.569Sarcophilus_harrisii
ENSDARG00000010710msi110094.393ENSSFOG00015014964-9587.619Scleropages_formosus
ENSDARG00000010710msi110094.907ENSSFOG00015005350MSI110093.581Scleropages_formosus
ENSDARG00000010710msi19995.270ENSSMAG00000018824MSI19795.270Scophthalmus_maximus
ENSDARG00000010710msi110092.991ENSSMAG00000009156-7183.588Scophthalmus_maximus
ENSDARG00000010710msi110092.523ENSSDUG00000022697-9686.084Seriola_dumerili
ENSDARG00000010710msi110095.327ENSSDUG00000001027MSI19489.524Seriola_dumerili
ENSDARG00000010710msi19986.084ENSSLDG00000018706-9686.084Seriola_lalandi_dorsalis
ENSDARG00000010710msi110095.327ENSSLDG00000016832MSI19495.270Seriola_lalandi_dorsalis
ENSDARG00000010710msi110088.426ENSSPUG00000015741MSI110083.281Sphenodon_punctatus
ENSDARG00000010710msi15297.414ENSSPAG00000015573zgc:11079660100.000Stegastes_partitus
ENSDARG00000010710msi110093.458ENSSPAG00000013098-10085.714Stegastes_partitus
ENSDARG00000010710msi18483.333ENSSPAG00000014085-10083.333Stegastes_partitus
ENSDARG00000010710msi19986.084ENSSSCG00000029365MSI19886.084Sus_scrofa
ENSDARG00000010710msi110084.889ENSTGUG00000009534MSI110081.288Taeniopygia_guttata
ENSDARG00000010710msi19984.122ENSTRUG00000015636-7984.122Takifugu_rubripes
ENSDARG00000010710msi18983.486ENSTRUG00000016249MSI110075.984Takifugu_rubripes
ENSDARG00000010710msi19963.787ENSTNIG00000019814-9463.787Tetraodon_nigroviridis
ENSDARG00000010710msi110086.636ENSTNIG00000011469MSI19483.648Tetraodon_nigroviridis
ENSDARG00000010710msi110074.009ENSTBEG00000007182MSI110072.527Tupaia_belangeri
ENSDARG00000010710msi19290.355ENSTTRG00000005663MSI17890.355Tursiops_truncatus
ENSDARG00000010710msi18387.640ENSUAMG00000015514MSI18593.264Ursus_americanus
ENSDARG00000010710msi19983.557ENSUMAG00000006176MSI18883.557Ursus_maritimus
ENSDARG00000010710msi110085.022ENSVVUG00000020993MSI110081.402Vulpes_vulpes
ENSDARG00000010710msi110084.579ENSXETG00000012216msi19481.905Xenopus_tropicalis
ENSDARG00000010710msi19976.351ENSXCOG00000017605MSI18976.351Xiphophorus_couchianus
ENSDARG00000010710msi110094.393ENSXMAG00000027103MSI19590.909Xiphophorus_maculatus
ENSDARG00000010710msi110091.589ENSXMAG00000018237-9089.865Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-IEAFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005844polysome21873635.IBAComponent
GO:0007417central nervous system development22429745.IMPProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent

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