EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000011020 (Gene tree)
Gene ID: -
Gene Symbol: hnrnpa1a
Alias: zgc:66127
Full Name: heterogeneous nuclear ribonucleoprotein A1a
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 10693 bases
Position: chr11:2240075-2250767
Accession: ZDB-GENE-040426-1546
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000024594	RRM_1	PF00076.22	1.7e-33	1	2
ENSDARP00000024594	RRM_1	PF00076.22	1.7e-33	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000018131	-	1167	XM_021479559	ENSDARP00000024594	388 (aa)	XP_021335234	E7FAQ8

Gene Model

Click here to download ENSDARG00000011020's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000011020's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000011020	hnrnpa1a	59	36.667	ENSDARG00000010710	msi1	54	37.975
ENSDARG00000011020	hnrnpa1a	58	65.333	ENSDARG00000059351	hnrnpa3	78	76.064
ENSDARG00000011020	hnrnpa1a	66	32.616	ENSDARG00000070846	dazap1	97	38.514
ENSDARG00000011020	hnrnpa1a	57	46.330	ENSDARG00000036162	hnrnpa0b	75	42.128
ENSDARG00000011020	hnrnpa1a	74	50.350	ENSDARG00000036161	hnrnpa0l	60	57.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000011020	hnrnpa1a	56	75.000	ENSAPOG00000019369	-	57	80.208	Acanthochromis_polyacanthus
ENSDARG00000011020	hnrnpa1a	58	75.000	ENSAOCG00000005289	-	57	80.208	Amphiprion_ocellaris
ENSDARG00000011020	hnrnpa1a	58	75.000	ENSAPEG00000004179	-	57	80.208	Amphiprion_percula
ENSDARG00000011020	hnrnpa1a	58	73.214	ENSATEG00000022918	hnrnpa1a	87	81.183	Anabas_testudineus
ENSDARG00000011020	hnrnpa1a	86	61.493	ENSACLG00000006940	-	57	81.250	Astatotilapia_calliptera
ENSDARG00000011020	hnrnpa1a	86	62.090	ENSCSEG00000007589	hnrnpa1a	69	81.915	Cynoglossus_semilaevis
ENSDARG00000011020	hnrnpa1a	53	54.762	ENSDORG00000026425	-	59	53.883	Dipodomys_ordii
ENSDARG00000011020	hnrnpa1a	50	82.474	ENSELUG00000007372	-	52	84.409	Esox_lucius
ENSDARG00000011020	hnrnpa1a	86	62.388	ENSGAFG00000007751	-	56	81.250	Gambusia_affinis
ENSDARG00000011020	hnrnpa1a	68	59.307	ENSGACG00000009435	-	53	81.579	Gasterosteus_aculeatus
ENSDARG00000011020	hnrnpa1a	56	86.574	ENSIPUG00000002023	hnrnpa1a	72	93.889	Ictalurus_punctatus
ENSDARG00000011020	hnrnpa1a	51	76.263	ENSIPUG00000022440	-	73	77.647	Ictalurus_punctatus
ENSDARG00000011020	hnrnpa1a	57	61.278	ENSKMAG00000020859	-	57	81.771	Kryptolebias_marmoratus
ENSDARG00000011020	hnrnpa1a	64	71.600	ENSLBEG00000010010	hnrnpa1a	55	81.250	Labrus_bergylta
ENSDARG00000011020	hnrnpa1a	86	62.388	ENSMAMG00000007606	-	56	81.250	Mastacembelus_armatus
ENSDARG00000011020	hnrnpa1a	86	61.194	ENSMZEG00005027173	hnrnpa1a	57	81.250	Maylandia_zebra
ENSDARG00000011020	hnrnpa1a	52	79.310	ENSMMOG00000008251	hnrnpa1a	79	80.829	Mola_mola
ENSDARG00000011020	hnrnpa1a	86	62.687	ENSMALG00000014091	hnrnpa1a	55	80.729	Monopterus_albus
ENSDARG00000011020	hnrnpa1a	60	60.573	ENSNBRG00000018441	-	58	81.250	Neolamprologus_brichardi
ENSDARG00000011020	hnrnpa1a	51	47.396	ENSORLG00000029240	-	99	50.000	Oryzias_latipes
ENSDARG00000011020	hnrnpa1a	82	61.635	ENSORLG00000008001	-	58	81.250	Oryzias_latipes
ENSDARG00000011020	hnrnpa1a	82	61.635	ENSORLG00020006582	hnrnpa1a	86	81.421	Oryzias_latipes_hni
ENSDARG00000011020	hnrnpa1a	71	43.273	ENSORLG00020006043	-	59	48.864	Oryzias_latipes_hni
ENSDARG00000011020	hnrnpa1a	86	62.090	ENSOMEG00000015959	-	58	81.250	Oryzias_melastigma
ENSDARG00000011020	hnrnpa1a	62	65.272	ENSPMGG00000011804	hnrnpa1a	70	80.851	Periophthalmus_magnuspinnatus
ENSDARG00000011020	hnrnpa1a	55	76.498	ENSPFOG00000001825	-	56	81.250	Poecilia_formosa
ENSDARG00000011020	hnrnpa1a	55	76.498	ENSPMEG00000002425	-	56	81.250	Poecilia_mexicana
ENSDARG00000011020	hnrnpa1a	86	60.896	ENSPNAG00000021630	-	52	77.202	Pygocentrus_nattereri
ENSDARG00000011020	hnrnpa1a	65	94.737	ENSPNAG00000007752	hnrnpa1a	78	94.388	Pygocentrus_nattereri
ENSDARG00000011020	hnrnpa1a	57	72.851	ENSSMAG00000004641	hnrnpa1a	61	80.645	Scophthalmus_maximus
ENSDARG00000011020	hnrnpa1a	87	72.646	ENSSDUG00000013908	hnrnpa1a	84	82.222	Seriola_dumerili
ENSDARG00000011020	hnrnpa1a	71	72.065	ENSSLDG00000003718	hnrnpa1a	80	81.065	Seriola_lalandi_dorsalis
ENSDARG00000011020	hnrnpa1a	61	72.152	ENSSPAG00000018518	-	66	79.787	Stegastes_partitus
ENSDARG00000011020	hnrnpa1a	72	48.014	ENSTNIG00000007398	-	69	56.250	Tetraodon_nigroviridis
ENSDARG00000011020	hnrnpa1a	78	84.177	ENSXCOG00000009001	-	82	80.829	Xiphophorus_couchianus
ENSDARG00000011020	hnrnpa1a	55	76.498	ENSXMAG00000008076	-	56	81.250	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component