EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000011125 (Gene tree)
Gene ID: 402966
Gene Symbol: snrpb
Alias: zgc:77315
Full Name: small nuclear ribonucleoprotein polypeptides B and B1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 7075 bases
Position: chr6:57478337-57485411
Accession: ZDB-GENE-040426-1819
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000023337	LSM	PF01423.22	1.3e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000011663	-	963	-	ENSDARP00000023337	239 (aa)	-	Q9I9E5

Gene Model

Click here to download ENSDARG00000011125's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000011125's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000011125	snrpb	69	94.643	ENSG00000125835	SNRPB	74	100.000	Homo_sapiens
ENSDARG00000011125	snrpb	100	97.095	ENSAPOG00000019606	snrpb	82	97.095	Acanthochromis_polyacanthus
ENSDARG00000011125	snrpb	69	94.611	ENSAMEG00000011353	SNRPB	69	92.814	Ailuropoda_melanoleuca
ENSDARG00000011125	snrpb	92	97.309	ENSACIG00000014480	snrpb	99	97.309	Amphilophus_citrinellus
ENSDARG00000011125	snrpb	100	97.510	ENSAOCG00000006876	snrpb	100	97.510	Amphiprion_ocellaris
ENSDARG00000011125	snrpb	100	97.510	ENSAPEG00000021585	snrpb	100	97.510	Amphiprion_percula
ENSDARG00000011125	snrpb	100	96.266	ENSATEG00000009836	snrpb	100	96.266	Anabas_testudineus
ENSDARG00000011125	snrpb	66	95.625	ENSACAG00000002053	SNRPB	69	94.375	Anolis_carolinensis
ENSDARG00000011125	snrpb	96	87.879	ENSANAG00000036271	-	68	85.119	Aotus_nancymaae
ENSDARG00000011125	snrpb	69	94.643	ENSANAG00000024443	-	73	92.857	Aotus_nancymaae
ENSDARG00000011125	snrpb	100	97.095	ENSACLG00000014707	snrpb	100	97.095	Astatotilapia_calliptera
ENSDARG00000011125	snrpb	99	98.729	ENSAMXG00000029434	snrpb	99	98.729	Astyanax_mexicanus
ENSDARG00000011125	snrpb	91	83.710	ENSBTAG00000001038	SNRPB	73	93.452	Bos_taurus
ENSDARG00000011125	snrpb	69	94.643	ENSCJAG00000020971	-	73	92.857	Callithrix_jacchus
ENSDARG00000011125	snrpb	89	86.449	ENSCJAG00000023097	-	70	86.905	Callithrix_jacchus
ENSDARG00000011125	snrpb	75	81.522	ENSCAFG00000031109	-	70	81.657	Canis_familiaris
ENSDARG00000011125	snrpb	69	94.643	ENSCAFG00000006693	-	73	92.857	Canis_familiaris
ENSDARG00000011125	snrpb	69	94.643	ENSCAFG00020016981	-	70	92.857	Canis_lupus_dingo
ENSDARG00000011125	snrpb	76	94.536	ENSCHIG00000025449	-	73	93.452	Capra_hircus
ENSDARG00000011125	snrpb	69	94.643	ENSTSYG00000014498	-	73	92.857	Carlito_syrichta
ENSDARG00000011125	snrpb	96	73.478	ENSTSYG00000032303	-	55	76.000	Carlito_syrichta
ENSDARG00000011125	snrpb	69	94.611	ENSCAPG00000012669	SNRPB	73	92.814	Cavia_aperea
ENSDARG00000011125	snrpb	69	94.643	ENSCPOG00000039408	SNRPB	73	92.857	Cavia_porcellus
ENSDARG00000011125	snrpb	69	94.643	ENSCCAG00000026002	SNRPB	73	92.857	Cebus_capucinus
ENSDARG00000011125	snrpb	53	83.465	ENSCCAG00000035140	-	89	86.275	Cebus_capucinus
ENSDARG00000011125	snrpb	69	94.643	ENSCATG00000030230	SNRPB	73	92.857	Cercocebus_atys
ENSDARG00000011125	snrpb	69	94.643	ENSCLAG00000012442	SNRPB	71	92.857	Chinchilla_lanigera
ENSDARG00000011125	snrpb	69	94.643	ENSCSAG00000010840	SNRPB	73	92.857	Chlorocebus_sabaeus
ENSDARG00000011125	snrpb	95	96.943	ENSCPBG00000026801	SNRPB	99	96.943	Chrysemys_picta_bellii
ENSDARG00000011125	snrpb	69	94.643	ENSCANG00000019461	SNRPB	73	92.857	Colobus_angolensis_palliatus
ENSDARG00000011125	snrpb	69	94.643	ENSCGRG00001023046	Snrpb	73	92.857	Cricetulus_griseus_chok1gshd
ENSDARG00000011125	snrpb	67	94.479	ENSCGRG00000010423	Snrpb	71	93.125	Cricetulus_griseus_crigri
ENSDARG00000011125	snrpb	100	97.908	ENSCSEG00000020328	snrpb	100	97.908	Cynoglossus_semilaevis
ENSDARG00000011125	snrpb	69	94.643	ENSDNOG00000015545	-	70	92.857	Dasypus_novemcinctus
ENSDARG00000011125	snrpb	69	88.690	ENSDNOG00000007896	-	69	87.500	Dasypus_novemcinctus
ENSDARG00000011125	snrpb	73	94.350	ENSDORG00000029558	Snrpb	70	93.210	Dipodomys_ordii
ENSDARG00000011125	snrpb	62	69.799	FBgn0262601	SmB	74	69.799	Drosophila_melanogaster
ENSDARG00000011125	snrpb	75	81.522	ENSEBUG00000007467	SNRPB	62	89.262	Eptatretus_burgeri
ENSDARG00000011125	snrpb	69	94.048	ENSEASG00005012991	SNRPB	73	92.857	Equus_asinus_asinus
ENSDARG00000011125	snrpb	69	94.643	ENSECAG00000011944	SNRPB	73	92.857	Equus_caballus
ENSDARG00000011125	snrpb	69	94.643	ENSEEUG00000015568	SNRPB	59	92.857	Erinaceus_europaeus
ENSDARG00000011125	snrpb	99	97.458	ENSELUG00000014564	snrpb	99	97.458	Esox_lucius
ENSDARG00000011125	snrpb	69	94.643	ENSFCAG00000034090	-	73	92.857	Felis_catus
ENSDARG00000011125	snrpb	72	95.429	ENSFALG00000004866	SNRPB	69	95.000	Ficedula_albicollis
ENSDARG00000011125	snrpb	69	94.643	ENSFDAG00000009937	SNRPB	73	92.857	Fukomys_damarensis
ENSDARG00000011125	snrpb	76	95.628	ENSGALG00000035421	SNRPN	70	94.643	Gallus_gallus
ENSDARG00000011125	snrpb	71	98.235	ENSGAFG00000019558	snrpb	72	98.182	Gambusia_affinis
ENSDARG00000011125	snrpb	100	97.071	ENSGACG00000003262	snrpb	100	97.071	Gasterosteus_aculeatus
ENSDARG00000011125	snrpb	69	96.429	ENSGAGG00000001308	SNRPB	70	94.643	Gopherus_agassizii
ENSDARG00000011125	snrpb	69	94.643	ENSGGOG00000016138	SNRPB	73	92.857	Gorilla_gorilla
ENSDARG00000011125	snrpb	100	97.095	ENSHBUG00000008369	snrpb	100	97.095	Haplochromis_burtoni
ENSDARG00000011125	snrpb	69	94.643	ENSHGLG00000016241	-	73	92.857	Heterocephalus_glaber_female
ENSDARG00000011125	snrpb	63	86.000	ENSHGLG00000016505	-	72	86.000	Heterocephalus_glaber_female
ENSDARG00000011125	snrpb	63	86.000	ENSHGLG00100004178	-	72	86.000	Heterocephalus_glaber_male
ENSDARG00000011125	snrpb	69	94.643	ENSHGLG00100012877	-	73	92.857	Heterocephalus_glaber_male
ENSDARG00000011125	snrpb	100	98.326	ENSHCOG00000014888	snrpb	100	98.326	Hippocampus_comes
ENSDARG00000011125	snrpb	99	99.576	ENSIPUG00000024569	SNRPB	99	99.576	Ictalurus_punctatus
ENSDARG00000011125	snrpb	69	92.857	ENSSTOG00000033664	-	70	91.667	Ictidomys_tridecemlineatus
ENSDARG00000011125	snrpb	90	78.037	ENSSTOG00000027821	-	62	94.853	Ictidomys_tridecemlineatus
ENSDARG00000011125	snrpb	69	94.643	ENSJJAG00000024170	Snrpb	73	92.857	Jaculus_jaculus
ENSDARG00000011125	snrpb	95	96.943	ENSKMAG00000014494	snrpb	93	96.943	Kryptolebias_marmoratus
ENSDARG00000011125	snrpb	100	97.908	ENSLBEG00000005678	snrpb	100	97.908	Labrus_bergylta
ENSDARG00000011125	snrpb	76	94.536	ENSLACG00000011459	SNRPB	70	94.048	Latimeria_chalumnae
ENSDARG00000011125	snrpb	99	99.153	ENSLOCG00000002687	snrpb	99	99.153	Lepisosteus_oculatus
ENSDARG00000011125	snrpb	75	90.110	ENSLAFG00000017588	SNRPB	71	88.024	Loxodonta_africana
ENSDARG00000011125	snrpb	69	94.643	ENSMFAG00000038756	SNRPB	73	92.857	Macaca_fascicularis
ENSDARG00000011125	snrpb	69	94.643	ENSMMUG00000010050	SNRPB	73	92.857	Macaca_mulatta
ENSDARG00000011125	snrpb	69	94.643	ENSMNEG00000027954	SNRPB	73	92.857	Macaca_nemestrina
ENSDARG00000011125	snrpb	69	94.643	ENSMLEG00000022346	SNRPB	73	92.857	Mandrillus_leucophaeus
ENSDARG00000011125	snrpb	99	97.083	ENSMAMG00000009294	snrpb	97	97.083	Mastacembelus_armatus
ENSDARG00000011125	snrpb	100	97.095	ENSMZEG00005011856	snrpb	100	97.095	Maylandia_zebra
ENSDARG00000011125	snrpb	76	94.536	ENSMICG00000016519	SNRPB	73	93.452	Microcebus_murinus
ENSDARG00000011125	snrpb	75	84.530	ENSMICG00000015983	-	77	83.333	Microcebus_murinus
ENSDARG00000011125	snrpb	69	94.048	ENSMOCG00000002892	-	73	92.857	Microtus_ochrogaster
ENSDARG00000011125	snrpb	58	78.417	ENSMOCG00000021362	-	58	78.417	Microtus_ochrogaster
ENSDARG00000011125	snrpb	95	98.230	ENSMMOG00000013226	snrpb	97	98.230	Mola_mola
ENSDARG00000011125	snrpb	100	96.266	ENSMALG00000020839	snrpb	81	96.266	Monopterus_albus
ENSDARG00000011125	snrpb	69	94.643	MGP_CAROLIEiJ_G0024293	Snrpb	74	100.000	Mus_caroli
ENSDARG00000011125	snrpb	69	94.643	ENSMUSG00000027404	Snrpb	74	100.000	Mus_musculus
ENSDARG00000011125	snrpb	69	94.643	MGP_PahariEiJ_G0025738	Snrpb	74	100.000	Mus_pahari
ENSDARG00000011125	snrpb	69	94.643	MGP_SPRETEiJ_G0025213	Snrpb	73	100.000	Mus_spretus
ENSDARG00000011125	snrpb	69	94.643	ENSMPUG00000009283	SNRPB	73	92.857	Mustela_putorius_furo
ENSDARG00000011125	snrpb	92	90.045	ENSMLUG00000016951	SNRPB	92	90.498	Myotis_lucifugus
ENSDARG00000011125	snrpb	69	94.643	ENSNGAG00000012051	Snrpb	73	92.857	Nannospalax_galili
ENSDARG00000011125	snrpb	95	95.197	ENSNBRG00000006353	snrpb	87	95.197	Neolamprologus_brichardi
ENSDARG00000011125	snrpb	69	94.643	ENSNLEG00000029067	SNRPB	70	93.413	Nomascus_leucogenys
ENSDARG00000011125	snrpb	69	94.611	ENSMEUG00000015625	SNRPB	74	93.413	Notamacropus_eugenii
ENSDARG00000011125	snrpb	69	89.286	ENSODEG00000016060	-	70	88.095	Octodon_degus
ENSDARG00000011125	snrpb	69	94.643	ENSODEG00000004305	-	73	92.857	Octodon_degus
ENSDARG00000011125	snrpb	100	97.095	ENSONIG00000000248	snrpb	100	97.095	Oreochromis_niloticus
ENSDARG00000011125	snrpb	76	94.536	ENSOCUG00000014042	-	70	92.857	Oryctolagus_cuniculus
ENSDARG00000011125	snrpb	88	66.197	ENSOCUG00000026813	-	63	66.892	Oryctolagus_cuniculus
ENSDARG00000011125	snrpb	88	92.019	ENSOCUG00000028215	-	70	91.071	Oryctolagus_cuniculus
ENSDARG00000011125	snrpb	89	89.767	ENSOCUG00000021456	-	70	89.286	Oryctolagus_cuniculus
ENSDARG00000011125	snrpb	74	88.268	ENSOCUG00000022423	-	86	88.690	Oryctolagus_cuniculus
ENSDARG00000011125	snrpb	75	97.207	ENSORLG00000021862	snrpb	69	98.795	Oryzias_latipes
ENSDARG00000011125	snrpb	69	94.643	ENSOGAG00000016149	SNRPB	70	92.857	Otolemur_garnettii
ENSDARG00000011125	snrpb	76	94.536	ENSOARG00000006740	SNRPB	73	93.452	Ovis_aries
ENSDARG00000011125	snrpb	69	94.643	ENSPPAG00000036314	SNRPB	73	92.857	Pan_paniscus
ENSDARG00000011125	snrpb	69	94.643	ENSPPRG00000003233	-	73	92.857	Panthera_pardus
ENSDARG00000011125	snrpb	69	94.611	ENSPTIG00000007468	SNRPB	72	92.814	Panthera_tigris_altaica
ENSDARG00000011125	snrpb	69	94.643	ENSPTRG00000013176	SNRPB	73	92.857	Pan_troglodytes
ENSDARG00000011125	snrpb	69	94.643	ENSPANG00000020362	SNRPB	70	92.857	Papio_anubis
ENSDARG00000011125	snrpb	99	98.729	ENSPKIG00000002865	snrpb	99	98.729	Paramormyrops_kingsleyae
ENSDARG00000011125	snrpb	69	96.407	ENSPSIG00000014125	SNRPB	69	94.611	Pelodiscus_sinensis
ENSDARG00000011125	snrpb	74	96.591	ENSPMGG00000016349	snrpb	69	97.516	Periophthalmus_magnuspinnatus
ENSDARG00000011125	snrpb	69	94.643	ENSPEMG00000007948	Snrpb	73	92.857	Peromyscus_maniculatus_bairdii
ENSDARG00000011125	snrpb	69	94.012	ENSPCIG00000004694	SNRPB	69	92.216	Phascolarctos_cinereus
ENSDARG00000011125	snrpb	62	98.658	ENSPFOG00000011802	snrpb	63	98.658	Poecilia_formosa
ENSDARG00000011125	snrpb	89	68.075	ENSPREG00000015515	snrpb	62	98.519	Poecilia_reticulata
ENSDARG00000011125	snrpb	69	94.643	ENSPPYG00000010841	SNRPB	73	92.857	Pongo_abelii
ENSDARG00000011125	snrpb	69	94.643	ENSPCOG00000013686	SNRPB	73	92.857	Propithecus_coquereli
ENSDARG00000011125	snrpb	72	91.329	ENSPVAG00000017013	SNRPB	60	91.908	Pteropus_vampyrus
ENSDARG00000011125	snrpb	100	97.095	ENSPNYG00000014788	snrpb	100	97.095	Pundamilia_nyererei
ENSDARG00000011125	snrpb	99	99.153	ENSPNAG00000016126	snrpb	99	99.153	Pygocentrus_nattereri
ENSDARG00000011125	snrpb	69	94.643	ENSRNOG00000006961	Snrpb	73	100.000	Rattus_norvegicus
ENSDARG00000011125	snrpb	69	94.643	ENSRBIG00000040505	SNRPB	73	92.857	Rhinopithecus_bieti
ENSDARG00000011125	snrpb	69	94.643	ENSRROG00000036094	SNRPB	73	92.857	Rhinopithecus_roxellana
ENSDARG00000011125	snrpb	69	94.643	ENSSBOG00000027310	SNRPB	73	92.857	Saimiri_boliviensis_boliviensis
ENSDARG00000011125	snrpb	69	95.238	ENSSHAG00000010394	SNRPB	70	93.452	Sarcophilus_harrisii
ENSDARG00000011125	snrpb	99	97.458	ENSSFOG00015002870	snrpb	99	97.458	Scleropages_formosus
ENSDARG00000011125	snrpb	100	97.490	ENSSMAG00000006766	snrpb	100	97.490	Scophthalmus_maximus
ENSDARG00000011125	snrpb	100	97.095	ENSSDUG00000018539	snrpb	100	97.095	Seriola_dumerili
ENSDARG00000011125	snrpb	100	97.095	ENSSLDG00000022391	snrpb	100	97.095	Seriola_lalandi_dorsalis
ENSDARG00000011125	snrpb	71	77.326	ENSSARG00000003084	SNRPB	74	77.907	Sorex_araneus
ENSDARG00000011125	snrpb	69	96.407	ENSSPUG00000015659	SNRPB	70	94.611	Sphenodon_punctatus
ENSDARG00000011125	snrpb	100	97.095	ENSSPAG00000021992	snrpb	100	97.095	Stegastes_partitus
ENSDARG00000011125	snrpb	76	94.536	ENSSSCG00000040857	-	73	93.452	Sus_scrofa
ENSDARG00000011125	snrpb	95	74.236	ENSSSCG00000011966	-	77	69.945	Sus_scrofa
ENSDARG00000011125	snrpb	73	80.791	ENSTGUG00000005684	SNRPB	59	97.143	Taeniopygia_guttata
ENSDARG00000011125	snrpb	95	97.797	ENSTRUG00000023094	snrpb	99	97.797	Takifugu_rubripes
ENSDARG00000011125	snrpb	100	97.490	ENSTNIG00000002991	snrpb	100	97.490	Tetraodon_nigroviridis
ENSDARG00000011125	snrpb	69	94.643	ENSUAMG00000005984	-	80	92.857	Ursus_americanus
ENSDARG00000011125	snrpb	93	75.771	ENSVVUG00000010086	-	71	75.595	Vulpes_vulpes
ENSDARG00000011125	snrpb	69	94.048	ENSVVUG00000025654	-	70	92.857	Vulpes_vulpes
ENSDARG00000011125	snrpb	63	98.000	ENSXETG00000027266	snrpb	63	98.000	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005687	U4 snRNP	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0019012	virion	-	IEA	Component
GO:0019013	viral nucleocapsid	-	IEA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component