EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000011247 (Gene tree)
Gene ID: 565672
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 33481 bases
Position: chr24:28934875-28968355
Accession: ZDB-GENE-060312-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000019728	RRM_1	PF00076.22	5.1e-16	1	2
ENSDARP00000019728	RRM_1	PF00076.22	5.1e-16	2	2
ENSDARP00000155505	RRM_1	PF00076.22	5.1e-16	1	2
ENSDARP00000155505	RRM_1	PF00076.22	5.1e-16	2	2
ENSDARP00000155778	RRM_1	PF00076.22	5.1e-16	1	2
ENSDARP00000155778	RRM_1	PF00076.22	5.1e-16	2	2
ENSDARP00000127851	RRM_1	PF00076.22	3.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000153761	-	897	-	ENSDARP00000127851	186 (aa)	-	X1WCA8
ENSDART00000183580	-	3458	-	ENSDARP00000155505	505 (aa)	-	F1Q8J0
ENSDART00000185020	-	6855	XM_005162821	ENSDARP00000155778	505 (aa)	XP_005162878	F1Q8J0
ENSDART00000017427	-	1729	XM_005162819	ENSDARP00000019728	505 (aa)	XP_005162876	F1Q8J0

Gene Model

Click here to download ENSDARG00000011247's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000011247's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000011247	rnpc3	94	65.143	ENSG00000185946	RNPC3	100	58.696	Homo_sapiens
ENSDARG00000011247	rnpc3	98	67.191	ENSAPOG00000017371	rnpc3	99	66.601	Acanthochromis_polyacanthus
ENSDARG00000011247	rnpc3	99	63.441	ENSAMEG00000001694	RNPC3	94	57.515	Ailuropoda_melanoleuca
ENSDARG00000011247	rnpc3	97	69.892	ENSACIG00000021043	rnpc3	99	64.314	Amphilophus_citrinellus
ENSDARG00000011247	rnpc3	94	72.727	ENSAOCG00000014052	rnpc3	97	67.984	Amphiprion_ocellaris
ENSDARG00000011247	rnpc3	94	72.727	ENSAPEG00000008739	rnpc3	97	67.787	Amphiprion_percula
ENSDARG00000011247	rnpc3	99	64.854	ENSATEG00000021263	rnpc3	99	65.825	Anabas_testudineus
ENSDARG00000011247	rnpc3	91	64.912	ENSAPLG00000015605	RNPC3	99	55.921	Anas_platyrhynchos
ENSDARG00000011247	rnpc3	95	56.823	ENSACAG00000002029	RNPC3	95	53.908	Anolis_carolinensis
ENSDARG00000011247	rnpc3	94	65.517	ENSANAG00000019950	RNPC3	95	57.510	Aotus_nancymaae
ENSDARG00000011247	rnpc3	99	64.510	ENSACLG00000014702	rnpc3	99	64.118	Astatotilapia_calliptera
ENSDARG00000011247	rnpc3	99	71.820	ENSAMXG00000033372	rnpc3	99	72.603	Astyanax_mexicanus
ENSDARG00000011247	rnpc3	93	64.740	ENSBTAG00000019091	RNPC3	95	56.410	Bos_taurus
ENSDARG00000011247	rnpc3	94	65.517	ENSCJAG00000035686	RNPC3	95	56.972	Callithrix_jacchus
ENSDARG00000011247	rnpc3	97	58.032	ENSCAFG00000019972	RNPC3	95	57.631	Canis_familiaris
ENSDARG00000011247	rnpc3	97	58.517	ENSCAFG00020011300	RNPC3	95	57.631	Canis_lupus_dingo
ENSDARG00000011247	rnpc3	93	64.740	ENSCHIG00000020361	RNPC3	95	55.030	Capra_hircus
ENSDARG00000011247	rnpc3	96	63.128	ENSTSYG00000030256	RNPC3	95	55.556	Carlito_syrichta
ENSDARG00000011247	rnpc3	88	61.585	ENSCAPG00000013600	RNPC3	97	49.425	Cavia_aperea
ENSDARG00000011247	rnpc3	96	63.687	ENSCPOG00000031638	RNPC3	95	57.937	Cavia_porcellus
ENSDARG00000011247	rnpc3	94	65.517	ENSCCAG00000024301	RNPC3	95	56.522	Cebus_capucinus
ENSDARG00000011247	rnpc3	94	64.943	ENSCATG00000002086	RNPC3	94	57.822	Cercocebus_atys
ENSDARG00000011247	rnpc3	93	60.694	ENSCATG00000035930	-	53	52.823	Cercocebus_atys
ENSDARG00000011247	rnpc3	90	65.868	ENSCLAG00000005169	RNPC3	95	55.621	Chinchilla_lanigera
ENSDARG00000011247	rnpc3	94	64.943	ENSCSAG00000001519	RNPC3	94	57.822	Chlorocebus_sabaeus
ENSDARG00000011247	rnpc3	89	66.272	ENSCPBG00000028311	RNPC3	95	56.713	Chrysemys_picta_bellii
ENSDARG00000011247	rnpc3	94	37.526	ENSCSAVG00000002800	-	100	37.214	Ciona_savignyi
ENSDARG00000011247	rnpc3	94	64.943	ENSCANG00000031444	RNPC3	94	57.822	Colobus_angolensis_palliatus
ENSDARG00000011247	rnpc3	93	62.428	ENSCGRG00001019276	Rnpc3	95	56.375	Cricetulus_griseus_chok1gshd
ENSDARG00000011247	rnpc3	94	61.714	ENSCGRG00000000053	Rnpc3	100	54.957	Cricetulus_griseus_crigri
ENSDARG00000011247	rnpc3	99	63.796	ENSCSEG00000013475	rnpc3	99	63.601	Cynoglossus_semilaevis
ENSDARG00000011247	rnpc3	98	66.602	ENSCVAG00000002645	rnpc3	99	65.698	Cyprinodon_variegatus
ENSDARG00000011247	rnpc3	93	65.896	ENSDNOG00000047498	-	95	55.622	Dasypus_novemcinctus
ENSDARG00000011247	rnpc3	93	65.318	ENSDNOG00000044555	-	95	55.221	Dasypus_novemcinctus
ENSDARG00000011247	rnpc3	89	66.667	ENSDORG00000027343	Rnpc3	95	56.944	Dipodomys_ordii
ENSDARG00000011247	rnpc3	96	59.218	ENSEBUG00000002068	rnpc3	99	47.368	Eptatretus_burgeri
ENSDARG00000011247	rnpc3	91	64.118	ENSEASG00005015957	RNPC3	95	55.556	Equus_asinus_asinus
ENSDARG00000011247	rnpc3	91	64.118	ENSECAG00000021148	RNPC3	95	55.556	Equus_caballus
ENSDARG00000011247	rnpc3	99	67.437	ENSELUG00000002264	rnpc3	99	68.208	Esox_lucius
ENSDARG00000011247	rnpc3	99	63.441	ENSFCAG00000024312	RNPC3	95	56.574	Felis_catus
ENSDARG00000011247	rnpc3	94	62.857	ENSFALG00000002580	RNPC3	99	59.070	Ficedula_albicollis
ENSDARG00000011247	rnpc3	93	65.896	ENSFDAG00000019948	RNPC3	95	56.250	Fukomys_damarensis
ENSDARG00000011247	rnpc3	97	62.298	ENSFHEG00000020647	rnpc3	97	62.298	Fundulus_heteroclitus
ENSDARG00000011247	rnpc3	99	64.356	ENSGMOG00000019213	rnpc3	98	63.294	Gadus_morhua
ENSDARG00000011247	rnpc3	91	64.912	ENSGALG00000005162	RNPC3	89	52.268	Gallus_gallus
ENSDARG00000011247	rnpc3	99	63.976	ENSGAFG00000017236	rnpc3	99	63.386	Gambusia_affinis
ENSDARG00000011247	rnpc3	99	62.718	ENSGACG00000002048	rnpc3	99	64.591	Gasterosteus_aculeatus
ENSDARG00000011247	rnpc3	89	65.089	ENSGAGG00000008438	RNPC3	95	56.972	Gopherus_agassizii
ENSDARG00000011247	rnpc3	89	58.434	ENSGGOG00000026201	-	94	49.495	Gorilla_gorilla
ENSDARG00000011247	rnpc3	84	72.785	ENSHBUG00000015966	rnpc3	85	66.667	Haplochromis_burtoni
ENSDARG00000011247	rnpc3	93	65.318	ENSHGLG00000001708	RNPC3	95	57.229	Heterocephalus_glaber_female
ENSDARG00000011247	rnpc3	93	65.318	ENSHGLG00100003005	RNPC3	95	57.229	Heterocephalus_glaber_male
ENSDARG00000011247	rnpc3	94	67.978	ENSHCOG00000017135	rnpc3	98	64.271	Hippocampus_comes
ENSDARG00000011247	rnpc3	100	70.727	ENSIPUG00000002916	rnpc3	100	70.334	Ictalurus_punctatus
ENSDARG00000011247	rnpc3	92	64.912	ENSSTOG00000025020	RNPC3	95	55.888	Ictidomys_tridecemlineatus
ENSDARG00000011247	rnpc3	97	57.143	ENSJJAG00000010203	Rnpc3	96	56.287	Jaculus_jaculus
ENSDARG00000011247	rnpc3	98	66.333	ENSKMAG00000017358	rnpc3	99	64.729	Kryptolebias_marmoratus
ENSDARG00000011247	rnpc3	99	64.706	ENSLBEG00000024901	rnpc3	98	64.118	Labrus_bergylta
ENSDARG00000011247	rnpc3	99	59.766	ENSLACG00000005720	RNPC3	93	59.766	Latimeria_chalumnae
ENSDARG00000011247	rnpc3	95	72.316	ENSLOCG00000007986	rnpc3	98	67.000	Lepisosteus_oculatus
ENSDARG00000011247	rnpc3	93	65.318	ENSLAFG00000032342	RNPC3	95	56.048	Loxodonta_africana
ENSDARG00000011247	rnpc3	85	62.893	ENSMFAG00000002917	-	52	53.556	Macaca_fascicularis
ENSDARG00000011247	rnpc3	94	64.943	ENSMFAG00000002004	RNPC3	94	57.822	Macaca_fascicularis
ENSDARG00000011247	rnpc3	94	64.943	ENSMMUG00000018039	RNPC3	94	57.624	Macaca_mulatta
ENSDARG00000011247	rnpc3	85	63.522	ENSMMUG00000002098	-	85	54.545	Macaca_mulatta
ENSDARG00000011247	rnpc3	97	54.851	ENSMNEG00000033950	RNPC3	94	54.455	Macaca_nemestrina
ENSDARG00000011247	rnpc3	94	64.943	ENSMLEG00000033628	RNPC3	94	57.822	Mandrillus_leucophaeus
ENSDARG00000011247	rnpc3	85	64.151	ENSMLEG00000034644	-	95	44.490	Mandrillus_leucophaeus
ENSDARG00000011247	rnpc3	97	60.040	ENSMAMG00000007496	rnpc3	98	57.791	Mastacembelus_armatus
ENSDARG00000011247	rnpc3	99	64.008	ENSMZEG00005020233	rnpc3	99	63.992	Maylandia_zebra
ENSDARG00000011247	rnpc3	89	67.066	ENSMGAG00000006381	RNPC3	99	55.702	Meleagris_gallopavo
ENSDARG00000011247	rnpc3	93	63.006	ENSMAUG00000001358	Rnpc3	95	56.970	Mesocricetus_auratus
ENSDARG00000011247	rnpc3	94	66.092	ENSMICG00000029591	RNPC3	95	56.338	Microcebus_murinus
ENSDARG00000011247	rnpc3	93	63.584	ENSMOCG00000013423	Rnpc3	95	57.371	Microtus_ochrogaster
ENSDARG00000011247	rnpc3	99	63.745	ENSMMOG00000005309	rnpc3	99	63.546	Mola_mola
ENSDARG00000011247	rnpc3	94	63.793	ENSMODG00000002946	RNPC3	95	56.262	Monodelphis_domestica
ENSDARG00000011247	rnpc3	98	62.624	ENSMALG00000015471	rnpc3	98	62.425	Monopterus_albus
ENSDARG00000011247	rnpc3	93	63.006	MGP_CAROLIEiJ_G0025555	Rnpc3	96	57.258	Mus_caroli
ENSDARG00000011247	rnpc3	93	63.584	ENSMUSG00000027981	Rnpc3	99	54.927	Mus_musculus
ENSDARG00000011247	rnpc3	94	60.920	MGP_PahariEiJ_G0027001	Rnpc3	97	54.528	Mus_pahari
ENSDARG00000011247	rnpc3	93	63.006	MGP_SPRETEiJ_G0026505	Rnpc3	96	56.349	Mus_spretus
ENSDARG00000011247	rnpc3	99	62.703	ENSMPUG00000007349	RNPC3	95	57.315	Mustela_putorius_furo
ENSDARG00000011247	rnpc3	90	65.089	ENSMLUG00000028743	RNPC3	94	57.520	Myotis_lucifugus
ENSDARG00000011247	rnpc3	96	63.128	ENSNGAG00000010939	Rnpc3	95	56.855	Nannospalax_galili
ENSDARG00000011247	rnpc3	99	64.706	ENSNBRG00000012196	rnpc3	97	63.938	Neolamprologus_brichardi
ENSDARG00000011247	rnpc3	94	65.143	ENSNLEG00000012013	RNPC3	95	57.510	Nomascus_leucogenys
ENSDARG00000011247	rnpc3	93	65.318	ENSODEG00000007612	RNPC3	95	56.827	Octodon_degus
ENSDARG00000011247	rnpc3	97	68.478	ENSONIG00000004770	rnpc3	100	66.129	Oreochromis_niloticus
ENSDARG00000011247	rnpc3	87	68.519	ENSOANG00000008220	RNPC3	99	56.751	Ornithorhynchus_anatinus
ENSDARG00000011247	rnpc3	93	65.896	ENSOCUG00000004016	RNPC3	95	56.338	Oryctolagus_cuniculus
ENSDARG00000011247	rnpc3	99	65.098	ENSORLG00000005694	rnpc3	99	64.510	Oryzias_latipes
ENSDARG00000011247	rnpc3	99	65.039	ENSORLG00020005513	rnpc3	99	64.453	Oryzias_latipes_hni
ENSDARG00000011247	rnpc3	99	65.226	ENSORLG00015002179	rnpc3	99	64.637	Oryzias_latipes_hsok
ENSDARG00000011247	rnpc3	99	64.764	ENSOMEG00000017737	rnpc3	99	64.032	Oryzias_melastigma
ENSDARG00000011247	rnpc3	96	64.607	ENSOGAG00000026182	RNPC3	95	56.151	Otolemur_garnettii
ENSDARG00000011247	rnpc3	93	64.740	ENSOARG00000018719	RNPC3	95	55.030	Ovis_aries
ENSDARG00000011247	rnpc3	94	65.143	ENSPPAG00000037459	RNPC3	95	57.199	Pan_paniscus
ENSDARG00000011247	rnpc3	89	59.639	ENSPPAG00000030278	-	97	49.699	Pan_paniscus
ENSDARG00000011247	rnpc3	99	63.441	ENSPPRG00000020246	RNPC3	95	56.751	Panthera_pardus
ENSDARG00000011247	rnpc3	99	63.441	ENSPTIG00000009887	RNPC3	97	55.773	Panthera_tigris_altaica
ENSDARG00000011247	rnpc3	94	65.143	ENSPTRG00000033902	RNPC3	95	57.708	Pan_troglodytes
ENSDARG00000011247	rnpc3	89	60.241	ENSPTRG00000044227	-	97	49.900	Pan_troglodytes
ENSDARG00000011247	rnpc3	94	64.943	ENSPANG00000012137	RNPC3	94	57.822	Papio_anubis
ENSDARG00000011247	rnpc3	99	64.625	ENSPKIG00000008828	rnpc3	99	64.902	Paramormyrops_kingsleyae
ENSDARG00000011247	rnpc3	85	66.875	ENSPSIG00000007396	RNPC3	99	54.762	Pelodiscus_sinensis
ENSDARG00000011247	rnpc3	64	40.833	ENSPSIG00000003931	RBM41	63	33.929	Pelodiscus_sinensis
ENSDARG00000011247	rnpc3	92	70.286	ENSPMGG00000011742	rnpc3	97	61.569	Periophthalmus_magnuspinnatus
ENSDARG00000011247	rnpc3	93	63.006	ENSPEMG00000020112	Rnpc3	100	55.388	Peromyscus_maniculatus_bairdii
ENSDARG00000011247	rnpc3	97	57.315	ENSPCIG00000004415	-	95	56.487	Phascolarctos_cinereus
ENSDARG00000011247	rnpc3	94	69.714	ENSPFOG00000009895	rnpc3	99	62.868	Poecilia_formosa
ENSDARG00000011247	rnpc3	94	69.714	ENSPLAG00000012023	rnpc3	99	62.868	Poecilia_latipinna
ENSDARG00000011247	rnpc3	94	69.886	ENSPMEG00000003663	rnpc3	99	63.065	Poecilia_mexicana
ENSDARG00000011247	rnpc3	94	68.571	ENSPREG00000010206	rnpc3	99	62.919	Poecilia_reticulata
ENSDARG00000011247	rnpc3	80	54.157	ENSPPYG00000001102	RNPC3	93	53.682	Pongo_abelii
ENSDARG00000011247	rnpc3	99	64.314	ENSPNYG00000020603	rnpc3	99	63.922	Pundamilia_nyererei
ENSDARG00000011247	rnpc3	93	63.584	ENSRNOG00000017310	Rnpc3	95	56.349	Rattus_norvegicus
ENSDARG00000011247	rnpc3	97	53.755	ENSRBIG00000043897	RNPC3	94	53.360	Rhinopithecus_bieti
ENSDARG00000011247	rnpc3	94	64.943	ENSRROG00000032334	RNPC3	94	57.822	Rhinopithecus_roxellana
ENSDARG00000011247	rnpc3	94	65.517	ENSSBOG00000024473	RNPC3	95	56.917	Saimiri_boliviensis_boliviensis
ENSDARG00000011247	rnpc3	91	65.294	ENSSHAG00000011859	RNPC3	96	56.064	Sarcophilus_harrisii
ENSDARG00000011247	rnpc3	96	73.333	ENSSFOG00015013055	rnpc3	99	68.182	Scleropages_formosus
ENSDARG00000011247	rnpc3	98	63.905	ENSSMAG00000020346	rnpc3	98	63.511	Scophthalmus_maximus
ENSDARG00000011247	rnpc3	99	67.123	ENSSDUG00000006600	rnpc3	99	66.732	Seriola_dumerili
ENSDARG00000011247	rnpc3	99	65.558	ENSSLDG00000007979	rnpc3	99	66.536	Seriola_lalandi_dorsalis
ENSDARG00000011247	rnpc3	91	64.327	ENSSPUG00000003872	-	93	52.600	Sphenodon_punctatus
ENSDARG00000011247	rnpc3	88	66.667	ENSSPUG00000008539	-	93	56.795	Sphenodon_punctatus
ENSDARG00000011247	rnpc3	94	73.295	ENSSPAG00000005633	rnpc3	99	66.004	Stegastes_partitus
ENSDARG00000011247	rnpc3	93	65.318	ENSSSCG00000037254	RNPC3	95	56.436	Sus_scrofa
ENSDARG00000011247	rnpc3	94	63.429	ENSTGUG00000004795	-	99	56.209	Taeniopygia_guttata
ENSDARG00000011247	rnpc3	88	64.881	ENSTGUG00000016137	-	99	58.333	Taeniopygia_guttata
ENSDARG00000011247	rnpc3	89	71.515	ENSTRUG00000001130	-	96	71.515	Takifugu_rubripes
ENSDARG00000011247	rnpc3	99	64.694	ENSTNIG00000018963	rnpc3	99	63.458	Tetraodon_nigroviridis
ENSDARG00000011247	rnpc3	99	63.441	ENSUMAG00000007775	RNPC3	96	57.430	Ursus_maritimus
ENSDARG00000011247	rnpc3	97	58.517	ENSVVUG00000000331	RNPC3	95	57.631	Vulpes_vulpes
ENSDARG00000011247	rnpc3	92	62.791	ENSXETG00000025027	rnpc3	97	44.487	Xenopus_tropicalis
ENSDARG00000011247	rnpc3	94	69.886	ENSXCOG00000005013	rnpc3	99	61.315	Xiphophorus_couchianus
ENSDARG00000011247	rnpc3	99	64.648	ENSXMAG00000006495	rnpc3	99	63.583	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	24516132.	IMP	Process
GO:0001889	liver development	24516132.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0030626	U12 snRNA binding	21873635.	IBA	Function
GO:0031016	pancreas development	24516132.	IMP	Process
GO:0048565	digestive tract development	24516132.	IMP	Process
GO:0097157	pre-mRNA intronic binding	21873635.	IBA	Function