EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000011405 (Gene tree)
Gene ID
114420
Gene Symbol
rps9
Alias
hm:zeh0819
Full Name
ribosomal protein S9
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Plus strand
Length
5711 bases
Position
chr16:31921812-31927522
Accession
ZDB-GENE-010724-15
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000144431S4PF01479.252e-1011
ENSDARP00000147936S4PF01479.252e-1011
ENSDARP00000112704S4PF01479.256.1e-0511
ENSDARP00000114119S4PF01479.256.1e-0511
ENSDARP00000114316S4PF01479.256.1e-0511
ENSDARP00000112704Ribosomal_S4PF00163.195.1e-0511
ENSDARP00000114119Ribosomal_S4PF00163.195.1e-0511
ENSDARP00000114316Ribosomal_S4PF00163.195.1e-0511
ENSDARP00000144431Ribosomal_S4PF00163.198.2e-0511
ENSDARP00000147936Ribosomal_S4PF00163.198.2e-0511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000131661-453-ENSDARP00000112704135 (aa)-A3KQ06
ENSDART00000133934-847--- (aa)--
ENSDART00000145510-475-ENSDARP00000114316135 (aa)-A3KQ06
ENSDART00000193733-4538-ENSDARP00000147936194 (aa)-Q6P5M3
ENSDART00000144194-469-ENSDARP00000114119135 (aa)-A3KQ06
ENSDART00000176928-3843-ENSDARP00000144431194 (aa)-Q6P5M3
Gene Model
Click here to download ENSDARG00000011405's gene model file
Pathways
Pathway IDPathway NameSource
dre03010RibosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000011405's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000011405rps910095.556ENSG00000170889RPS910093.525Homo_sapiens
ENSDARG00000011405rps910097.037ENSAPOG00000016312rps910096.392Acanthochromis_polyacanthus
ENSDARG00000011405rps910095.556ENSAMEG00000004630RPS99795.556Ailuropoda_melanoleuca
ENSDARG00000011405rps910097.037ENSAOCG00000021159rps910096.392Amphiprion_ocellaris
ENSDARG00000011405rps910097.037ENSAPEG00000008214rps910096.392Amphiprion_percula
ENSDARG00000011405rps910097.778ENSATEG00000022661rps910096.907Anabas_testudineus
ENSDARG00000011405rps910094.815ENSACAG00000016566RPS99495.055Anolis_carolinensis
ENSDARG00000011405rps910095.556ENSANAG00000004180RPS910093.525Aotus_nancymaae
ENSDARG00000011405rps95982.278ENSANAG00000020343-9882.278Aotus_nancymaae
ENSDARG00000011405rps910097.037ENSACLG00000021384rps910096.392Astatotilapia_calliptera
ENSDARG00000011405rps910097.778ENSAMXG00000010402rps910097.794Astyanax_mexicanus
ENSDARG00000011405rps910095.556ENSBTAG00000006487RPS99993.525Bos_taurus
ENSDARG00000011405rps99584.375WBGene00004478rps-99282.759Caenorhabditis_elegans
ENSDARG00000011405rps910091.852ENSCJAG00000017658-8691.216Callithrix_jacchus
ENSDARG00000011405rps910095.556ENSCJAG00000001130-9595.556Callithrix_jacchus
ENSDARG00000011405rps910095.556ENSCAFG00000002652RPS99495.604Canis_familiaris
ENSDARG00000011405rps910095.556ENSCAFG00020018329RPS910093.525Canis_lupus_dingo
ENSDARG00000011405rps910091.111ENSCHIG00000026324-9491.176Capra_hircus
ENSDARG00000011405rps910095.556ENSCHIG00000024085RPS99495.604Capra_hircus
ENSDARG00000011405rps910095.556ENSTSYG00000012074-9695.556Carlito_syrichta
ENSDARG00000011405rps96495.161ENSCAPG00000013312RPS96996.429Cavia_aperea
ENSDARG00000011405rps910095.556ENSCPOG00000020893RPS99795.556Cavia_porcellus
ENSDARG00000011405rps910095.556ENSCCAG00000007081-10093.525Cebus_capucinus
ENSDARG00000011405rps910095.556ENSCATG00000029320RPS910093.525Cercocebus_atys
ENSDARG00000011405rps910095.556ENSCLAG00000000504RPS99795.556Chinchilla_lanigera
ENSDARG00000011405rps910095.556ENSCSAG00000018755-9495.055Chlorocebus_sabaeus
ENSDARG00000011405rps99296.089ENSCPBG00000018251RPS99297.605Chrysemys_picta_bellii
ENSDARG00000011405rps910088.889ENSCING00000021248-9590.608Ciona_intestinalis
ENSDARG00000011405rps99988.060ENSCSAVG00000003644-9988.060Ciona_savignyi
ENSDARG00000011405rps99978.986ENSCANG00000036954-7880.272Colobus_angolensis_palliatus
ENSDARG00000011405rps910095.556ENSCANG00000036604RPS910094.245Colobus_angolensis_palliatus
ENSDARG00000011405rps910095.556ENSCGRG00001001119Rps99994.203Cricetulus_griseus_chok1gshd
ENSDARG00000011405rps910082.990ENSCGRG00000000157-9382.967Cricetulus_griseus_crigri
ENSDARG00000011405rps910097.037ENSCSEG00000018918rps910096.392Cynoglossus_semilaevis
ENSDARG00000011405rps910097.037ENSCVAG00000007999rps910096.392Cyprinodon_variegatus
ENSDARG00000011405rps910095.556ENSDNOG00000044158RPS99495.604Dasypus_novemcinctus
ENSDARG00000011405rps910095.556ENSDORG00000015828Rps99795.556Dipodomys_ordii
ENSDARG00000011405rps99589.844FBgn0010408RpS99489.922Drosophila_melanogaster
ENSDARG00000011405rps910073.196ENSETEG00000009696RPS99473.077Echinops_telfairi
ENSDARG00000011405rps910094.074ENSEBUG00000011539rps99393.407Eptatretus_burgeri
ENSDARG00000011405rps910095.556ENSECAG00000020316RPS99795.556Equus_caballus
ENSDARG00000011405rps910097.037ENSELUG00000015000rps99497.253Esox_lucius
ENSDARG00000011405rps910095.556ENSFCAG00000014048RPS910093.525Felis_catus
ENSDARG00000011405rps910095.556ENSFDAG00000007469RPS99795.556Fukomys_damarensis
ENSDARG00000011405rps910097.037ENSFHEG00000016569rps910096.392Fundulus_heteroclitus
ENSDARG00000011405rps910096.296ENSGMOG00000005074rps99496.703Gadus_morhua
ENSDARG00000011405rps910097.037ENSGAFG00000013201rps910096.392Gambusia_affinis
ENSDARG00000011405rps910097.037ENSGACG00000010761rps99996.350Gasterosteus_aculeatus
ENSDARG00000011405rps910096.296ENSGAGG00000002562RPS99896.324Gopherus_agassizii
ENSDARG00000011405rps910091.852ENSGGOG00000042271-9492.308Gorilla_gorilla
ENSDARG00000011405rps99892.424ENSGGOG00000025031-8392.424Gorilla_gorilla
ENSDARG00000011405rps910085.567ENSGGOG00000025810-9485.714Gorilla_gorilla
ENSDARG00000011405rps910095.556ENSGGOG00000027839-10093.525Gorilla_gorilla
ENSDARG00000011405rps910097.037ENSHBUG00000013399rps910096.392Haplochromis_burtoni
ENSDARG00000011405rps910095.556ENSHGLG00000017784RPS99994.203Heterocephalus_glaber_female
ENSDARG00000011405rps910095.556ENSHGLG00100003924RPS99994.203Heterocephalus_glaber_male
ENSDARG00000011405rps910095.556ENSHCOG00000020779rps99495.604Hippocampus_comes
ENSDARG00000011405rps910097.778ENSIPUG00000000061rps910097.423Ictalurus_punctatus
ENSDARG00000011405rps910095.556ENSSTOG00000020325RPS99795.556Ictidomys_tridecemlineatus
ENSDARG00000011405rps910080.928ENSJJAG00000015488-9380.769Jaculus_jaculus
ENSDARG00000011405rps910095.556ENSJJAG00000015795-10095.588Jaculus_jaculus
ENSDARG00000011405rps910091.237ENSJJAG00000013812-9491.758Jaculus_jaculus
ENSDARG00000011405rps910097.037ENSKMAG00000005101rps910096.392Kryptolebias_marmoratus
ENSDARG00000011405rps910097.037ENSLBEG00000017125rps910096.392Labrus_bergylta
ENSDARG00000011405rps910096.296ENSLACG00000011099RPS99995.652Latimeria_chalumnae
ENSDARG00000011405rps910072.165ENSLOCG00000008007rps99471.978Lepisosteus_oculatus
ENSDARG00000011405rps910095.556ENSLAFG00000010760RPS99495.604Loxodonta_africana
ENSDARG00000011405rps910095.556ENSMFAG00000033649RPS910094.245Macaca_fascicularis
ENSDARG00000011405rps910095.556ENSMMUG00000022552RPS99495.604Macaca_mulatta
ENSDARG00000011405rps910095.556ENSMNEG00000013713RPS910094.245Macaca_nemestrina
ENSDARG00000011405rps910095.556ENSMLEG00000023735RPS910094.245Mandrillus_leucophaeus
ENSDARG00000011405rps910097.037ENSMAMG00000019474rps910096.392Mastacembelus_armatus
ENSDARG00000011405rps910097.037ENSMZEG00005016370rps910096.392Maylandia_zebra
ENSDARG00000011405rps910095.556ENSMAUG00000016938Rps99994.203Mesocricetus_auratus
ENSDARG00000011405rps910095.556ENSMICG00000014928RPS99795.556Microcebus_murinus
ENSDARG00000011405rps910095.556ENSMOCG00000004350-9395.604Microtus_ochrogaster
ENSDARG00000011405rps910090.370ENSMOCG00000006744-9489.560Microtus_ochrogaster
ENSDARG00000011405rps910095.556ENSMOCG00000010762Rps99795.556Microtus_ochrogaster
ENSDARG00000011405rps910097.037ENSMMOG00000016468rps910096.392Mola_mola
ENSDARG00000011405rps910075.258ENSMODG00000003974RPS99374.725Monodelphis_domestica
ENSDARG00000011405rps910097.778ENSMALG00000009363rps910096.907Monopterus_albus
ENSDARG00000011405rps910095.556MGP_CAROLIEiJ_G0029100Rps910095.588Mus_caroli
ENSDARG00000011405rps910095.556ENSMUSG00000006333Rps910095.588Mus_musculus
ENSDARG00000011405rps910094.815MGP_PahariEiJ_G0020969Rps910094.853Mus_pahari
ENSDARG00000011405rps910095.556MGP_SPRETEiJ_G0030153Rps910095.588Mus_spretus
ENSDARG00000011405rps910089.706ENSMPUG00000019169-9487.978Mustela_putorius_furo
ENSDARG00000011405rps910095.556ENSMPUG00000010394RPS99495.604Mustela_putorius_furo
ENSDARG00000011405rps910094.815ENSMLUG00000016897-9495.055Myotis_lucifugus
ENSDARG00000011405rps910094.074ENSMLUG00000002154-9494.505Myotis_lucifugus
ENSDARG00000011405rps910080.741ENSNGAG00000017852-9689.565Nannospalax_galili
ENSDARG00000011405rps910095.556ENSNGAG00000023394Rps99495.604Nannospalax_galili
ENSDARG00000011405rps910097.037ENSNBRG00000003450rps910096.392Neolamprologus_brichardi
ENSDARG00000011405rps910093.333ENSNLEG00000018247-9992.086Nomascus_leucogenys
ENSDARG00000011405rps910095.556ENSNLEG00000006314RPS99795.556Nomascus_leucogenys
ENSDARG00000011405rps910090.370ENSNLEG00000035027-9789.781Nomascus_leucogenys
ENSDARG00000011405rps910095.556ENSOPRG00000001628-9495.604Ochotona_princeps
ENSDARG00000011405rps910080.000ENSODEG00000016631-8980.645Octodon_degus
ENSDARG00000011405rps910095.556ENSODEG00000002087-9795.556Octodon_degus
ENSDARG00000011405rps910086.667ENSODEG00000019411-9386.740Octodon_degus
ENSDARG00000011405rps910091.237ENSODEG00000019010-9491.758Octodon_degus
ENSDARG00000011405rps910089.630ENSODEG00000019680-9490.110Octodon_degus
ENSDARG00000011405rps910097.037ENSONIG00000012752rps910096.392Oreochromis_niloticus
ENSDARG00000011405rps910094.815ENSOANG00000014748-10094.853Ornithorhynchus_anatinus
ENSDARG00000011405rps910097.037ENSORLG00000011258rps910096.392Oryzias_latipes
ENSDARG00000011405rps910097.037ENSORLG00020007734rps910096.392Oryzias_latipes_hni
ENSDARG00000011405rps910097.037ENSORLG00015013498rps99796.350Oryzias_latipes_hsok
ENSDARG00000011405rps910096.296ENSOMEG00000010547rps99496.703Oryzias_melastigma
ENSDARG00000011405rps910095.556ENSOGAG00000006813RPS99495.604Otolemur_garnettii
ENSDARG00000011405rps910092.593ENSOARG00000010831-10091.160Ovis_aries
ENSDARG00000011405rps910095.556ENSOARG00000002753-9493.407Ovis_aries
ENSDARG00000011405rps910095.556ENSPPAG00000028401RPS910093.525Pan_paniscus
ENSDARG00000011405rps910080.000ENSPPAG00000043211-9375.275Pan_paniscus
ENSDARG00000011405rps910095.556ENSPPRG00000011810RPS910093.525Panthera_pardus
ENSDARG00000011405rps99984.375ENSPTIG00000010169RPS97797.315Panthera_tigris_altaica
ENSDARG00000011405rps99993.985ENSPTRG00000041697-9488.276Pan_troglodytes
ENSDARG00000011405rps910084.444ENSPTRG00000045479-9378.571Pan_troglodytes
ENSDARG00000011405rps910095.556ENSPTRG00000050995-10093.525Pan_troglodytes
ENSDARG00000011405rps910095.556ENSPTRG00000011449RPS910093.525Pan_troglodytes
ENSDARG00000011405rps910078.351ENSPANG00000011359RPS910071.223Papio_anubis
ENSDARG00000011405rps910088.148ENSPSIG00000005938RPS99490.110Pelodiscus_sinensis
ENSDARG00000011405rps910097.037ENSPMGG00000012078rps910096.392Periophthalmus_magnuspinnatus
ENSDARG00000011405rps910095.556ENSPEMG00000013302-9994.203Peromyscus_maniculatus_bairdii
ENSDARG00000011405rps910094.815ENSPMAG00000000193-9493.956Petromyzon_marinus
ENSDARG00000011405rps910095.556ENSPCIG00000023372RPS99495.055Phascolarctos_cinereus
ENSDARG00000011405rps910096.324ENSPFOG00000009299rps910095.897Poecilia_formosa
ENSDARG00000011405rps910097.037ENSPLAG00000012829rps910096.392Poecilia_latipinna
ENSDARG00000011405rps910097.037ENSPMEG00000017606rps910096.392Poecilia_mexicana
ENSDARG00000011405rps910097.037ENSPREG00000007924rps910097.059Poecilia_reticulata
ENSDARG00000011405rps910095.556ENSPPYG00000010377RPS99495.604Pongo_abelii
ENSDARG00000011405rps910095.556ENSPCAG00000012395RPS99594.972Procavia_capensis
ENSDARG00000011405rps910095.556ENSPCOG00000013987RPS910093.525Propithecus_coquereli
ENSDARG00000011405rps96893.151ENSPVAG00000015571RPS96195.652Pteropus_vampyrus
ENSDARG00000011405rps910097.037ENSPNYG00000002115rps910096.392Pundamilia_nyererei
ENSDARG00000011405rps910097.037ENSPNAG00000011249rps910096.392Pygocentrus_nattereri
ENSDARG00000011405rps910091.852ENSRNOG00000039203AABR07040892.19491.758Rattus_norvegicus
ENSDARG00000011405rps910095.556ENSRNOG00000058909Rps9l110095.588Rattus_norvegicus
ENSDARG00000011405rps910090.206ENSRNOG00000050067AABR07026058.19490.659Rattus_norvegicus
ENSDARG00000011405rps910095.556ENSRBIG00000041681RPS910094.245Rhinopithecus_bieti
ENSDARG00000011405rps910089.630ENSRBIG00000040750-8689.706Rhinopithecus_bieti
ENSDARG00000011405rps910084.021ENSRBIG00000042902-9384.615Rhinopithecus_bieti
ENSDARG00000011405rps910074.742ENSRROG00000030184-9374.725Rhinopithecus_roxellana
ENSDARG00000011405rps910095.556ENSRROG00000036731RPS910094.245Rhinopithecus_roxellana
ENSDARG00000011405rps910089.630ENSRROG00000043910-8789.781Rhinopithecus_roxellana
ENSDARG00000011405rps910075.000YBR189WRPS9B9273.481Saccharomyces_cerevisiae
ENSDARG00000011405rps910074.265YPL081WRPS9A9172.928Saccharomyces_cerevisiae
ENSDARG00000011405rps910070.103ENSSBOG00000024187-9370.330Saimiri_boliviensis_boliviensis
ENSDARG00000011405rps910095.556ENSSBOG00000015501-10093.525Saimiri_boliviensis_boliviensis
ENSDARG00000011405rps910097.037ENSSFOG00015000650rps910096.907Scleropages_formosus
ENSDARG00000011405rps910097.037ENSSMAG00000013149rps910096.392Scophthalmus_maximus
ENSDARG00000011405rps910097.037ENSSDUG00000008689rps910096.392Seriola_dumerili
ENSDARG00000011405rps910097.037ENSSLDG00000022240rps910096.392Seriola_lalandi_dorsalis
ENSDARG00000011405rps910095.556ENSSARG00000005909RPS99495.604Sorex_araneus
ENSDARG00000011405rps910091.237ENSSARG00000010223-9491.758Sorex_araneus
ENSDARG00000011405rps910095.556ENSSPUG00000008604RPS99495.604Sphenodon_punctatus
ENSDARG00000011405rps910097.037ENSSPAG00000016660rps910096.392Stegastes_partitus
ENSDARG00000011405rps910095.556ENSSSCG00000029785RPS910093.525Sus_scrofa
ENSDARG00000011405rps910097.778ENSTRUG00000015896rps910096.907Takifugu_rubripes
ENSDARG00000011405rps910084.021ENSTBEG00000003585RPS99484.066Tupaia_belangeri
ENSDARG00000011405rps99096.000ENSTTRG00000006572RPS99396.933Tursiops_truncatus
ENSDARG00000011405rps910095.556ENSUMAG00000010897RPS910093.525Ursus_maritimus
ENSDARG00000011405rps910095.556ENSVVUG00000008202-9495.604Vulpes_vulpes
ENSDARG00000011405rps910097.037ENSXETG00000009030rps99496.703Xenopus_tropicalis
ENSDARG00000011405rps910097.037ENSXMAG00000012175rps910096.392Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-IEAFunction
GO:0003735structural constituent of ribosome21873635.IBAFunction
GO:0003735structural constituent of ribosome-IEAFunction
GO:0005840ribosome-IEAComponent
GO:0006412translation-IEAProcess
GO:0015935small ribosomal subunit-IEAComponent
GO:0019843rRNA binding21873635.IBAFunction
GO:0019843rRNA binding-IEAFunction
GO:0022627cytosolic small ribosomal subunit21873635.IBAComponent
GO:0045903positive regulation of translational fidelity21873635.IBAProcess

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