EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000011564 (Gene tree)
Gene ID: 406564
Gene Symbol: sfpq
Alias: hm:zeh0027|wis|wu:fa11h12|wu:fd10f03|zgc:85935
Full Name: splicing factor proline/glutamine-rich
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 29464 bases
Position: chr19:40025928-40055391
Accession: ZDB-GENE-040426-2452
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000020522	RRM_1	PF00076.22	9.8e-28	1	2
ENSDARP00000020522	RRM_1	PF00076.22	9.8e-28	2	2
ENSDARP00000126326	RRM_1	PF00076.22	9.3e-14	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000123647	-	688	-	ENSDARP00000126326	115 (aa)	-	I3ITQ3
ENSDART00000134873	-	818	-	-	- (aa)	-	-
ENSDART00000017359	-	2424	-	ENSDARP00000020522	638 (aa)	-	Q1L8R2
ENSDART00000151438	-	2273	-	ENSDARP00000126177	607 (aa)	-	I3ITB4

Gene Model

Click here to download ENSDARG00000011564's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000011564's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000011564	sfpq	97	75.893	ENSDARG00000006621	pspc1	84	60.767
ENSDARG00000011564	sfpq	100	69.565	ENSDARG00000020482	nono	83	67.742

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000011564	sfpq	100	83.478	ENSG00000116560	SFPQ	100	69.196	Homo_sapiens
ENSDARG00000011564	sfpq	100	86.087	ENSAPOG00000024257	sfpq	63	77.829	Acanthochromis_polyacanthus
ENSDARG00000011564	sfpq	100	83.478	ENSAMEG00000000815	SFPQ	99	71.526	Ailuropoda_melanoleuca
ENSDARG00000011564	sfpq	100	84.348	ENSACIG00000000905	sfpq	94	64.495	Amphilophus_citrinellus
ENSDARG00000011564	sfpq	100	84.348	ENSAOCG00000002889	sfpq	61	77.598	Amphiprion_ocellaris
ENSDARG00000011564	sfpq	100	84.348	ENSAPEG00000016556	sfpq	61	77.598	Amphiprion_percula
ENSDARG00000011564	sfpq	100	88.696	ENSATEG00000002981	sfpq	95	67.264	Anabas_testudineus
ENSDARG00000011564	sfpq	100	82.609	ENSANAG00000027438	-	64	62.025	Aotus_nancymaae
ENSDARG00000011564	sfpq	94	62.963	ENSANAG00000037798	-	99	50.857	Aotus_nancymaae
ENSDARG00000011564	sfpq	100	83.478	ENSANAG00000021268	-	100	47.009	Aotus_nancymaae
ENSDARG00000011564	sfpq	100	84.348	ENSACLG00000022332	sfpq	63	78.271	Astatotilapia_calliptera
ENSDARG00000011564	sfpq	100	91.304	ENSAMXG00000011538	sfpq	100	64.521	Astyanax_mexicanus
ENSDARG00000011564	sfpq	100	83.478	ENSBTAG00000016328	SFPQ	60	74.065	Bos_taurus
ENSDARG00000011564	sfpq	98	55.752	WBGene00017778	nono-1	67	50.199	Caenorhabditis_elegans
ENSDARG00000011564	sfpq	100	83.478	ENSCJAG00000001431	SFPQ	62	71.298	Callithrix_jacchus
ENSDARG00000011564	sfpq	100	81.739	ENSCAFG00000018271	-	66	67.273	Canis_familiaris
ENSDARG00000011564	sfpq	100	77.391	ENSCAFG00000017608	-	64	65.753	Canis_familiaris
ENSDARG00000011564	sfpq	100	83.478	ENSCAFG00000003595	-	66	71.298	Canis_familiaris
ENSDARG00000011564	sfpq	100	81.739	ENSCAFG00020004881	-	66	67.273	Canis_lupus_dingo
ENSDARG00000011564	sfpq	100	83.478	ENSCAFG00020010702	-	100	64.265	Canis_lupus_dingo
ENSDARG00000011564	sfpq	100	83.478	ENSCHIG00000023097	SFPQ	62	71.298	Capra_hircus
ENSDARG00000011564	sfpq	98	65.789	ENSTSYG00000035106	-	98	58.046	Carlito_syrichta
ENSDARG00000011564	sfpq	100	83.478	ENSTSYG00000037120	-	100	69.886	Carlito_syrichta
ENSDARG00000011564	sfpq	100	83.478	ENSCPOG00000015018	-	100	60.055	Cavia_porcellus
ENSDARG00000011564	sfpq	100	83.478	ENSCCAG00000029361	-	62	71.298	Cebus_capucinus
ENSDARG00000011564	sfpq	56	64.615	ENSCATG00000032664	-	61	44.944	Cercocebus_atys
ENSDARG00000011564	sfpq	100	83.478	ENSCATG00000036179	-	53	75.749	Cercocebus_atys
ENSDARG00000011564	sfpq	100	83.478	ENSCLAG00000009583	-	100	69.886	Chinchilla_lanigera
ENSDARG00000011564	sfpq	100	83.478	ENSCSAG00000001082	SFPQ	62	71.298	Chlorocebus_sabaeus
ENSDARG00000011564	sfpq	100	83.478	ENSCHOG00000009131	SFPQ	100	70.866	Choloepus_hoffmanni
ENSDARG00000011564	sfpq	100	83.478	ENSCPBG00000018674	SFPQ	67	70.345	Chrysemys_picta_bellii
ENSDARG00000011564	sfpq	100	83.478	ENSCANG00000028087	-	100	69.886	Colobus_angolensis_palliatus
ENSDARG00000011564	sfpq	100	83.478	ENSCGRG00001011698	Sfpq	82	60.172	Cricetulus_griseus_chok1gshd
ENSDARG00000011564	sfpq	100	83.478	ENSCGRG00000010128	Sfpq	95	72.622	Cricetulus_griseus_crigri
ENSDARG00000011564	sfpq	100	86.957	ENSCSEG00000007852	sfpq	65	79.236	Cynoglossus_semilaevis
ENSDARG00000011564	sfpq	100	75.652	ENSCVAG00000019538	sfpq	92	57.492	Cyprinodon_variegatus
ENSDARG00000011564	sfpq	100	83.478	ENSDNOG00000049454	SFPQ	62	71.298	Dasypus_novemcinctus
ENSDARG00000011564	sfpq	100	83.478	ENSDORG00000008109	Sfpq	62	71.298	Dipodomys_ordii
ENSDARG00000011564	sfpq	100	83.478	ENSETEG00000001095	SFPQ	61	60.879	Echinops_telfairi
ENSDARG00000011564	sfpq	100	83.478	ENSEASG00005012012	SFPQ	86	59.059	Equus_asinus_asinus
ENSDARG00000011564	sfpq	100	83.478	ENSECAG00000000642	SFPQ	86	59.059	Equus_caballus
ENSDARG00000011564	sfpq	100	90.435	ENSELUG00000023145	sfpq	95	65.610	Esox_lucius
ENSDARG00000011564	sfpq	100	83.478	ENSFCAG00000042862	SFPQ	62	71.298	Felis_catus
ENSDARG00000011564	sfpq	100	83.478	ENSFALG00000000731	SFPQ	100	67.614	Ficedula_albicollis
ENSDARG00000011564	sfpq	100	83.478	ENSFDAG00000017723	-	100	61.190	Fukomys_damarensis
ENSDARG00000011564	sfpq	100	80.870	ENSFHEG00000015200	sfpq	56	74.702	Fundulus_heteroclitus
ENSDARG00000011564	sfpq	100	86.957	ENSGMOG00000011950	SFPQ	94	64.677	Gadus_morhua
ENSDARG00000011564	sfpq	100	85.217	ENSGMOG00000011957	sfpq	94	61.120	Gadus_morhua
ENSDARG00000011564	sfpq	100	83.478	ENSGALG00000002514	SFPQ	66	70.302	Gallus_gallus
ENSDARG00000011564	sfpq	100	78.261	ENSGAFG00000014571	sfpq	90	59.747	Gambusia_affinis
ENSDARG00000011564	sfpq	100	86.087	ENSGACG00000002034	sfpq	95	65.691	Gasterosteus_aculeatus
ENSDARG00000011564	sfpq	100	83.478	ENSGGOG00000026354	SFPQ	100	69.886	Gorilla_gorilla
ENSDARG00000011564	sfpq	100	84.348	ENSHBUG00000016818	sfpq	63	78.271	Haplochromis_burtoni
ENSDARG00000011564	sfpq	100	83.478	ENSHGLG00000012001	SFPQ	87	58.128	Heterocephalus_glaber_female
ENSDARG00000011564	sfpq	100	83.478	ENSHGLG00100004136	-	100	69.886	Heterocephalus_glaber_male
ENSDARG00000011564	sfpq	100	89.565	ENSHCOG00000008612	sfpq	94	59.428	Hippocampus_comes
ENSDARG00000011564	sfpq	100	87.826	ENSIPUG00000013076	SFPQ	100	69.984	Ictalurus_punctatus
ENSDARG00000011564	sfpq	100	83.478	ENSSTOG00000014004	-	100	69.886	Ictidomys_tridecemlineatus
ENSDARG00000011564	sfpq	100	83.478	ENSJJAG00000015633	Sfpq	62	71.298	Jaculus_jaculus
ENSDARG00000011564	sfpq	100	80.000	ENSKMAG00000000238	sfpq	54	76.651	Kryptolebias_marmoratus
ENSDARG00000011564	sfpq	100	89.565	ENSLBEG00000003163	sfpq	57	79.951	Labrus_bergylta
ENSDARG00000011564	sfpq	100	81.739	ENSLACG00000014728	SFPQ	71	71.818	Latimeria_chalumnae
ENSDARG00000011564	sfpq	100	86.957	ENSLOCG00000001067	sfpq	99	63.339	Lepisosteus_oculatus
ENSDARG00000011564	sfpq	100	83.478	ENSLAFG00000015951	SFPQ	99	56.329	Loxodonta_africana
ENSDARG00000011564	sfpq	100	83.478	ENSMFAG00000000797	SFPQ	62	71.298	Macaca_fascicularis
ENSDARG00000011564	sfpq	100	83.478	ENSMMUG00000019154	SFPQ	62	71.298	Macaca_mulatta
ENSDARG00000011564	sfpq	100	83.478	ENSMNEG00000038895	SFPQ	62	71.298	Macaca_nemestrina
ENSDARG00000011564	sfpq	100	75.652	ENSMLEG00000010643	-	100	67.330	Mandrillus_leucophaeus
ENSDARG00000011564	sfpq	68	80.769	ENSMLEG00000035352	-	99	62.385	Mandrillus_leucophaeus
ENSDARG00000011564	sfpq	100	86.957	ENSMAMG00000007875	sfpq	95	66.118	Mastacembelus_armatus
ENSDARG00000011564	sfpq	100	84.348	ENSMZEG00005026091	sfpq	95	59.877	Maylandia_zebra
ENSDARG00000011564	sfpq	100	83.478	ENSMGAG00000004237	SFPQ	100	67.092	Meleagris_gallopavo
ENSDARG00000011564	sfpq	100	83.478	ENSMAUG00000006402	Sfpq	83	58.784	Mesocricetus_auratus
ENSDARG00000011564	sfpq	100	83.478	ENSMICG00000027265	SFPQ	62	71.298	Microcebus_murinus
ENSDARG00000011564	sfpq	100	74.783	ENSMOCG00000019075	Sfpq	90	69.248	Microtus_ochrogaster
ENSDARG00000011564	sfpq	100	86.087	ENSMMOG00000001074	sfpq	95	62.963	Mola_mola
ENSDARG00000011564	sfpq	100	83.478	ENSMODG00000017937	SFPQ	65	70.548	Monodelphis_domestica
ENSDARG00000011564	sfpq	100	87.826	ENSMALG00000010381	sfpq	94	64.390	Monopterus_albus
ENSDARG00000011564	sfpq	100	83.478	MGP_CAROLIEiJ_G0026487	Sfpq	63	71.526	Mus_caroli
ENSDARG00000011564	sfpq	100	83.478	ENSMUSG00000028820	Sfpq	63	71.526	Mus_musculus
ENSDARG00000011564	sfpq	100	83.478	MGP_PahariEiJ_G0028818	Sfpq	63	71.526	Mus_pahari
ENSDARG00000011564	sfpq	100	83.478	MGP_SPRETEiJ_G0027466	Sfpq	63	71.526	Mus_spretus
ENSDARG00000011564	sfpq	100	82.609	ENSMPUG00000014931	-	99	73.052	Mustela_putorius_furo
ENSDARG00000011564	sfpq	100	83.478	ENSMLUG00000027090	SFPQ	96	72.158	Myotis_lucifugus
ENSDARG00000011564	sfpq	100	83.478	ENSNGAG00000000888	Sfpq	62	71.526	Nannospalax_galili
ENSDARG00000011564	sfpq	100	85.217	ENSNBRG00000017479	sfpq	95	60.465	Neolamprologus_brichardi
ENSDARG00000011564	sfpq	100	83.478	ENSNLEG00000035521	-	100	69.886	Nomascus_leucogenys
ENSDARG00000011564	sfpq	100	83.478	ENSMEUG00000014082	SFPQ	63	71.396	Notamacropus_eugenii
ENSDARG00000011564	sfpq	100	83.478	ENSOPRG00000013696	SFPQ	62	71.364	Ochotona_princeps
ENSDARG00000011564	sfpq	100	83.478	ENSODEG00000005485	SFPQ	72	65.404	Octodon_degus
ENSDARG00000011564	sfpq	100	85.217	ENSONIG00000017737	sfpq	63	78.037	Oreochromis_niloticus
ENSDARG00000011564	sfpq	100	82.609	ENSOANG00000008789	-	100	69.516	Ornithorhynchus_anatinus
ENSDARG00000011564	sfpq	100	83.478	ENSOCUG00000001877	SFPQ	86	71.526	Oryctolagus_cuniculus
ENSDARG00000011564	sfpq	100	87.826	ENSORLG00000007459	sfpq	57	77.804	Oryzias_latipes
ENSDARG00000011564	sfpq	100	87.826	ENSORLG00020011818	sfpq	57	77.804	Oryzias_latipes_hni
ENSDARG00000011564	sfpq	100	87.826	ENSORLG00015002131	sfpq	57	77.804	Oryzias_latipes_hsok
ENSDARG00000011564	sfpq	100	87.826	ENSOMEG00000018020	sfpq	58	75.935	Oryzias_melastigma
ENSDARG00000011564	sfpq	100	83.478	ENSOGAG00000027710	SFPQ	83	71.526	Otolemur_garnettii
ENSDARG00000011564	sfpq	100	83.478	ENSOARG00000019439	SFPQ	66	72.286	Ovis_aries
ENSDARG00000011564	sfpq	100	83.478	ENSPPAG00000030078	SFPQ	62	71.298	Pan_paniscus
ENSDARG00000011564	sfpq	100	83.478	ENSPPRG00000015478	-	100	69.688	Panthera_pardus
ENSDARG00000011564	sfpq	100	83.478	ENSPTIG00000007710	-	100	69.886	Panthera_tigris_altaica
ENSDARG00000011564	sfpq	100	60.870	ENSPTRG00000000518	SFPQ	58	67.581	Pan_troglodytes
ENSDARG00000011564	sfpq	100	83.478	ENSPANG00000005380	SFPQ	65	71.526	Papio_anubis
ENSDARG00000011564	sfpq	100	86.957	ENSPKIG00000023035	sfpq	100	67.388	Paramormyrops_kingsleyae
ENSDARG00000011564	sfpq	100	83.478	ENSPSIG00000011494	SFPQ	99	70.534	Pelodiscus_sinensis
ENSDARG00000011564	sfpq	100	87.826	ENSPMGG00000023883	sfpq	95	57.964	Periophthalmus_magnuspinnatus
ENSDARG00000011564	sfpq	100	83.478	ENSPEMG00000009794	Sfpq	90	71.754	Peromyscus_maniculatus_bairdii
ENSDARG00000011564	sfpq	100	78.261	ENSPMAG00000005583	sfpq	99	58.542	Petromyzon_marinus
ENSDARG00000011564	sfpq	100	83.478	ENSPCIG00000000923	SFPQ	59	74.169	Phascolarctos_cinereus
ENSDARG00000011564	sfpq	100	77.391	ENSPFOG00000003127	sfpq	72	71.395	Poecilia_formosa
ENSDARG00000011564	sfpq	100	78.261	ENSPREG00000008060	sfpq	59	74.524	Poecilia_reticulata
ENSDARG00000011564	sfpq	100	83.478	ENSPPYG00000001560	SFPQ	62	71.298	Pongo_abelii
ENSDARG00000011564	sfpq	100	83.478	ENSPCAG00000006164	SFPQ	60	72.093	Procavia_capensis
ENSDARG00000011564	sfpq	100	83.478	ENSPCOG00000027127	SFPQ	62	71.298	Propithecus_coquereli
ENSDARG00000011564	sfpq	100	80.000	ENSPVAG00000001865	SFPQ	62	70.023	Pteropus_vampyrus
ENSDARG00000011564	sfpq	100	84.348	ENSPNYG00000007494	sfpq	61	79.286	Pundamilia_nyererei
ENSDARG00000011564	sfpq	100	91.304	ENSPNAG00000002128	sfpq	100	73.065	Pygocentrus_nattereri
ENSDARG00000011564	sfpq	100	83.478	ENSRNOG00000058461	Sfpq	63	71.526	Rattus_norvegicus
ENSDARG00000011564	sfpq	100	83.478	ENSRBIG00000035286	SFPQ	100	69.886	Rhinopithecus_bieti
ENSDARG00000011564	sfpq	100	83.478	ENSRROG00000040992	SFPQ	100	69.886	Rhinopithecus_roxellana
ENSDARG00000011564	sfpq	100	83.478	ENSSBOG00000024972	-	100	69.886	Saimiri_boliviensis_boliviensis
ENSDARG00000011564	sfpq	89	62.745	ENSSBOG00000033925	-	95	50.303	Saimiri_boliviensis_boliviensis
ENSDARG00000011564	sfpq	100	82.609	ENSSHAG00000012312	-	100	66.000	Sarcophilus_harrisii
ENSDARG00000011564	sfpq	100	83.478	ENSSHAG00000016107	-	97	68.514	Sarcophilus_harrisii
ENSDARG00000011564	sfpq	100	87.826	ENSSFOG00015009289	sfpq	100	64.815	Scleropages_formosus
ENSDARG00000011564	sfpq	99	85.965	ENSSMAG00000018201	sfpq	95	63.948	Scophthalmus_maximus
ENSDARG00000011564	sfpq	100	87.826	ENSSDUG00000008402	sfpq	95	64.537	Seriola_dumerili
ENSDARG00000011564	sfpq	100	87.826	ENSSLDG00000018917	sfpq	95	64.490	Seriola_lalandi_dorsalis
ENSDARG00000011564	sfpq	100	83.478	ENSSARG00000006409	SFPQ	100	71.003	Sorex_araneus
ENSDARG00000011564	sfpq	100	85.217	ENSSPAG00000016550	sfpq	62	80.668	Stegastes_partitus
ENSDARG00000011564	sfpq	100	83.478	ENSSSCG00000035690	SFPQ	60	74.065	Sus_scrofa
ENSDARG00000011564	sfpq	100	83.478	ENSTGUG00000001722	SFPQ	99	70.070	Taeniopygia_guttata
ENSDARG00000011564	sfpq	100	89.565	ENSTRUG00000003783	sfpq	63	79.577	Takifugu_rubripes
ENSDARG00000011564	sfpq	100	89.565	ENSTNIG00000011331	sfpq	99	66.041	Tetraodon_nigroviridis
ENSDARG00000011564	sfpq	100	83.478	ENSTTRG00000013930	SFPQ	62	69.476	Tursiops_truncatus
ENSDARG00000011564	sfpq	100	83.478	ENSUAMG00000026758	SFPQ	75	81.068	Ursus_americanus
ENSDARG00000011564	sfpq	100	83.478	ENSUMAG00000008056	-	100	67.614	Ursus_maritimus
ENSDARG00000011564	sfpq	100	83.478	ENSVPAG00000006960	-	59	67.347	Vicugna_pacos
ENSDARG00000011564	sfpq	100	83.478	ENSVVUG00000000874	-	100	62.464	Vulpes_vulpes
ENSDARG00000011564	sfpq	100	83.478	ENSXETG00000009682	sfpq	93	80.769	Xenopus_tropicalis
ENSDARG00000011564	sfpq	100	79.130	ENSXMAG00000016391	sfpq	57	75.515	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000976	transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	28392072.	IDA	Component
GO:0007420	brain development	17393485.	IMP	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0021522	spinal cord motor neuron differentiation	28392072.	IMP	Process
GO:0021547	midbrain-hindbrain boundary initiation	28392072.	IMP	Process
GO:0021591	ventricular system development	9007238.9007241.	IMP	Process
GO:0021654	rhombomere boundary formation	28392072.	IMP	Process
GO:0021955	central nervous system neuron axonogenesis	28392072.	IMP	Process
GO:0043005	neuron projection	28392072.	IDA	Component
GO:0048681	negative regulation of axon regeneration	24523552.	IMP	Process
GO:0048859	formation of anatomical boundary	28392072.	IMP	Process