EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000011597 (Gene tree)
Gene ID: 324525
Gene Symbol: atxn2l
Alias: wu:fc31f08|wu:fi19h05|zgc:66471
Full Name: ataxin 2-like
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 31262 bases
Position: chr3:15394428-15425689
Accession: ZDB-GENE-030131-3246
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000115477	PAM2	PF07145.15	2.3e-05	1	1
ENSDARP00000115477	LsmAD	PF06741.13	1.3e-17	1	1
ENSDARP00000115477	SM-ATX	PF14438.6	2e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000133168	-	3681	XM_005163799	ENSDARP00000115477	1004 (aa)	XP_005163856	F1QA42

Gene Model

Click here to download ENSDARG00000011597's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000011597's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000011597	atxn2l	66	52.027	ENSDARG00000052897	atxn2	74	49.527

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000011597	atxn2l	96	42.735	ENSG00000168488	ATXN2L	100	63.000	Homo_sapiens
ENSDARG00000011597	atxn2l	96	59.267	ENSAPOG00000010103	atxn2l	99	61.644	Acanthochromis_polyacanthus
ENSDARG00000011597	atxn2l	99	57.116	ENSAPOG00000021412	-	99	57.963	Acanthochromis_polyacanthus
ENSDARG00000011597	atxn2l	93	43.478	ENSAMEG00000015502	ATXN2L	85	43.856	Ailuropoda_melanoleuca
ENSDARG00000011597	atxn2l	81	64.345	ENSACIG00000024435	atxn2l	92	66.574	Amphilophus_citrinellus
ENSDARG00000011597	atxn2l	94	59.839	ENSAOCG00000011378	atxn2l	98	61.546	Amphiprion_ocellaris
ENSDARG00000011597	atxn2l	87	54.555	ENSAOCG00000002581	-	100	55.510	Amphiprion_ocellaris
ENSDARG00000011597	atxn2l	99	56.066	ENSAPEG00000011038	-	100	56.799	Amphiprion_percula
ENSDARG00000011597	atxn2l	78	55.515	ENSATEG00000017689	atxn2l	99	56.212	Anabas_testudineus
ENSDARG00000011597	atxn2l	99	56.538	ENSATEG00000019382	-	99	57.287	Anabas_testudineus
ENSDARG00000011597	atxn2l	96	41.343	ENSACAG00000005425	ATXN2L	100	42.079	Anolis_carolinensis
ENSDARG00000011597	atxn2l	99	41.835	ENSANAG00000026257	ATXN2L	94	41.260	Aotus_nancymaae
ENSDARG00000011597	atxn2l	99	56.986	ENSACLG00000009975	-	99	57.749	Astatotilapia_calliptera
ENSDARG00000011597	atxn2l	97	59.252	ENSAMXG00000020362	-	99	59.357	Astyanax_mexicanus
ENSDARG00000011597	atxn2l	92	66.784	ENSAMXG00000003332	atxn2l	100	80.851	Astyanax_mexicanus
ENSDARG00000011597	atxn2l	96	42.481	ENSBTAG00000032087	ATXN2L	92	42.763	Bos_taurus
ENSDARG00000011597	atxn2l	96	42.640	ENSCJAG00000006251	ATXN2L	91	42.018	Callithrix_jacchus
ENSDARG00000011597	atxn2l	92	43.478	ENSCAFG00000017174	ATXN2L	86	43.996	Canis_familiaris
ENSDARG00000011597	atxn2l	95	43.317	ENSCAFG00020017576	ATXN2L	89	43.891	Canis_lupus_dingo
ENSDARG00000011597	atxn2l	96	42.694	ENSTSYG00000013854	ATXN2L	91	42.294	Carlito_syrichta
ENSDARG00000011597	atxn2l	95	42.155	ENSCPOG00000010521	ATXN2L	99	42.383	Cavia_porcellus
ENSDARG00000011597	atxn2l	96	42.051	ENSCCAG00000033928	ATXN2L	93	42.445	Cebus_capucinus
ENSDARG00000011597	atxn2l	96	42.926	ENSCATG00000021354	ATXN2L	96	43.466	Cercocebus_atys
ENSDARG00000011597	atxn2l	83	40.994	ENSCPBG00000003859	ATXN2L	84	40.333	Chrysemys_picta_bellii
ENSDARG00000011597	atxn2l	96	40.649	ENSCANG00000043625	ATXN2L	99	40.129	Colobus_angolensis_palliatus
ENSDARG00000011597	atxn2l	60	54.003	ENSCSEG00000008530	-	98	54.488	Cynoglossus_semilaevis
ENSDARG00000011597	atxn2l	98	54.911	ENSCVAG00000015825	-	100	55.764	Cyprinodon_variegatus
ENSDARG00000011597	atxn2l	96	43.816	ENSEASG00005014992	ATXN2L	97	43.936	Equus_asinus_asinus
ENSDARG00000011597	atxn2l	86	54.963	ENSELUG00000022915	-	89	55.398	Esox_lucius
ENSDARG00000011597	atxn2l	100	63.811	ENSELUG00000023740	atxn2l	100	63.680	Esox_lucius
ENSDARG00000011597	atxn2l	99	41.582	ENSFCAG00000027807	ATXN2L	94	42.463	Felis_catus
ENSDARG00000011597	atxn2l	63	49.271	ENSFHEG00000004491	-	84	50.663	Fundulus_heteroclitus
ENSDARG00000011597	atxn2l	69	65.079	ENSGMOG00000000316	atxn2l	91	65.354	Gadus_morhua
ENSDARG00000011597	atxn2l	69	52.075	ENSGAFG00000019364	-	99	51.715	Gambusia_affinis
ENSDARG00000011597	atxn2l	98	55.534	ENSGACG00000007446	-	100	55.758	Gasterosteus_aculeatus
ENSDARG00000011597	atxn2l	66	51.282	ENSGGOG00000036669	-	79	50.542	Gorilla_gorilla
ENSDARG00000011597	atxn2l	99	56.895	ENSHBUG00000007997	-	100	57.479	Haplochromis_burtoni
ENSDARG00000011597	atxn2l	100	73.734	ENSIPUG00000001761	atxn2l	100	73.734	Ictalurus_punctatus
ENSDARG00000011597	atxn2l	77	42.230	ENSSTOG00000011807	ATXN2L	99	42.275	Ictidomys_tridecemlineatus
ENSDARG00000011597	atxn2l	93	42.830	ENSJJAG00000005629	Atxn2l	99	42.057	Jaculus_jaculus
ENSDARG00000011597	atxn2l	98	56.176	ENSKMAG00000021450	-	99	56.783	Kryptolebias_marmoratus
ENSDARG00000011597	atxn2l	91	41.802	ENSLAFG00000018143	ATXN2L	92	44.091	Loxodonta_africana
ENSDARG00000011597	atxn2l	93	42.718	ENSMFAG00000030590	ATXN2L	84	41.838	Macaca_fascicularis
ENSDARG00000011597	atxn2l	94	42.594	ENSMNEG00000032716	ATXN2L	91	43.175	Macaca_nemestrina
ENSDARG00000011597	atxn2l	96	41.751	ENSMLEG00000034087	ATXN2L	96	42.304	Mandrillus_leucophaeus
ENSDARG00000011597	atxn2l	99	54.977	ENSMAMG00000013005	-	99	56.279	Mastacembelus_armatus
ENSDARG00000011597	atxn2l	96	58.383	ENSMAMG00000017977	atxn2l	99	61.040	Mastacembelus_armatus
ENSDARG00000011597	atxn2l	99	56.986	ENSMZEG00005013869	-	99	57.749	Maylandia_zebra
ENSDARG00000011597	atxn2l	92	56.204	ENSMMOG00000001440	-	98	56.934	Mola_mola
ENSDARG00000011597	atxn2l	82	61.598	ENSMALG00000008430	-	93	58.963	Monopterus_albus
ENSDARG00000011597	atxn2l	96	43.118	MGP_CAROLIEiJ_G0030450	Atxn2l	79	65.934	Mus_caroli
ENSDARG00000011597	atxn2l	99	41.410	ENSMUSG00000032637	Atxn2l	79	65.934	Mus_musculus
ENSDARG00000011597	atxn2l	96	41.993	MGP_PahariEiJ_G0013660	Atxn2l	99	42.430	Mus_pahari
ENSDARG00000011597	atxn2l	99	41.501	MGP_SPRETEiJ_G0031564	Atxn2l	79	65.934	Mus_spretus
ENSDARG00000011597	atxn2l	93	42.899	ENSNGAG00000021446	Atxn2l	99	42.828	Nannospalax_galili
ENSDARG00000011597	atxn2l	77	47.696	ENSNBRG00000020833	-	97	53.923	Neolamprologus_brichardi
ENSDARG00000011597	atxn2l	99	41.797	ENSNLEG00000011004	ATXN2L	92	41.903	Nomascus_leucogenys
ENSDARG00000011597	atxn2l	81	58.900	ENSMEUG00000011098	ATXN2L	75	59.932	Notamacropus_eugenii
ENSDARG00000011597	atxn2l	93	40.744	ENSOPRG00000002270	-	91	41.052	Ochotona_princeps
ENSDARG00000011597	atxn2l	96	55.104	ENSONIG00000009388	atxn2l	99	56.706	Oreochromis_niloticus
ENSDARG00000011597	atxn2l	98	57.664	ENSONIG00000011478	-	100	57.330	Oreochromis_niloticus
ENSDARG00000011597	atxn2l	99	57.236	ENSORLG00000006059	-	99	56.651	Oryzias_latipes
ENSDARG00000011597	atxn2l	99	57.328	ENSORLG00020000991	-	99	56.839	Oryzias_latipes_hni
ENSDARG00000011597	atxn2l	99	57.514	ENSORLG00015014174	-	99	56.892	Oryzias_latipes_hsok
ENSDARG00000011597	atxn2l	99	56.611	ENSOMEG00000021118	-	99	56.215	Oryzias_melastigma
ENSDARG00000011597	atxn2l	63	54.448	ENSPPAG00000036236	-	80	53.819	Pan_paniscus
ENSDARG00000011597	atxn2l	99	41.582	ENSPPRG00000013690	ATXN2L	94	42.438	Panthera_pardus
ENSDARG00000011597	atxn2l	93	44.109	ENSPTIG00000015041	ATXN2L	93	43.158	Panthera_tigris_altaica
ENSDARG00000011597	atxn2l	95	41.994	ENSPANG00000018770	ATXN2L	90	42.006	Papio_anubis
ENSDARG00000011597	atxn2l	66	66.134	ENSPMGG00000014821	-	99	63.202	Periophthalmus_magnuspinnatus
ENSDARG00000011597	atxn2l	98	54.726	ENSPFOG00000005935	-	100	55.189	Poecilia_formosa
ENSDARG00000011597	atxn2l	98	55.009	ENSPLAG00000017094	-	100	55.472	Poecilia_latipinna
ENSDARG00000011597	atxn2l	98	54.726	ENSPMEG00000017227	-	100	55.189	Poecilia_mexicana
ENSDARG00000011597	atxn2l	98	54.854	ENSPREG00000023090	-	100	55.367	Poecilia_reticulata
ENSDARG00000011597	atxn2l	89	35.544	ENSPPYG00000017765	-	90	35.113	Pongo_abelii
ENSDARG00000011597	atxn2l	93	40.081	ENSPVAG00000003958	ATXN2L	83	40.060	Pteropus_vampyrus
ENSDARG00000011597	atxn2l	99	56.986	ENSPNYG00000017058	-	99	57.749	Pundamilia_nyererei
ENSDARG00000011597	atxn2l	81	63.610	ENSPNYG00000012482	atxn2l	94	64.183	Pundamilia_nyererei
ENSDARG00000011597	atxn2l	100	74.760	ENSPNAG00000014538	atxn2l	100	75.432	Pygocentrus_nattereri
ENSDARG00000011597	atxn2l	99	58.373	ENSPNAG00000023685	-	99	58.523	Pygocentrus_nattereri
ENSDARG00000011597	atxn2l	93	42.480	ENSRNOG00000018686	Atxn2l	84	43.120	Rattus_norvegicus
ENSDARG00000011597	atxn2l	77	62.162	ENSRBIG00000036712	ATXN2L	76	62.162	Rhinopithecus_bieti
ENSDARG00000011597	atxn2l	96	42.011	ENSRROG00000028547	ATXN2L	92	43.301	Rhinopithecus_roxellana
ENSDARG00000011597	atxn2l	94	41.994	ENSSBOG00000025782	ATXN2L	91	43.265	Saimiri_boliviensis_boliviensis
ENSDARG00000011597	atxn2l	95	42.967	ENSSHAG00000012015	ATXN2L	90	42.708	Sarcophilus_harrisii
ENSDARG00000011597	atxn2l	99	57.945	ENSSFOG00015001018	atxn2l	99	58.300	Scleropages_formosus
ENSDARG00000011597	atxn2l	77	61.122	ENSSMAG00000016365	atxn2l	93	56.974	Scophthalmus_maximus
ENSDARG00000011597	atxn2l	99	56.022	ENSSMAG00000016932	-	99	56.342	Scophthalmus_maximus
ENSDARG00000011597	atxn2l	96	58.563	ENSSDUG00000005833	atxn2l	99	60.117	Seriola_dumerili
ENSDARG00000011597	atxn2l	98	56.444	ENSSDUG00000023014	-	100	56.719	Seriola_dumerili
ENSDARG00000011597	atxn2l	81	68.702	ENSSLDG00000017701	-	66	54.027	Seriola_lalandi_dorsalis
ENSDARG00000011597	atxn2l	90	41.331	ENSSARG00000009732	ATXN2L	91	42.095	Sorex_araneus
ENSDARG00000011597	atxn2l	94	59.899	ENSSPAG00000015698	atxn2l	97	61.738	Stegastes_partitus
ENSDARG00000011597	atxn2l	99	56.221	ENSSPAG00000008174	-	99	56.131	Stegastes_partitus
ENSDARG00000011597	atxn2l	99	54.871	ENSTRUG00000007132	-	99	56.799	Takifugu_rubripes
ENSDARG00000011597	atxn2l	98	56.220	ENSTNIG00000018942	-	100	56.538	Tetraodon_nigroviridis
ENSDARG00000011597	atxn2l	99	42.553	ENSUAMG00000001462	ATXN2L	94	43.044	Ursus_americanus
ENSDARG00000011597	atxn2l	96	39.507	ENSUMAG00000009437	ATXN2L	98	42.618	Ursus_maritimus
ENSDARG00000011597	atxn2l	94	42.702	ENSVVUG00000024239	ATXN2L	100	43.379	Vulpes_vulpes
ENSDARG00000011597	atxn2l	98	54.485	ENSXMAG00000010133	-	100	54.554	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0010494	cytoplasmic stress granule	21873635.	IBA	Component
GO:0010603	regulation of cytoplasmic mRNA processing body assembly	21873635.	IBA	Process
GO:0034063	stress granule assembly	21873635.	IBA	Process