EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000011648 (Gene tree)
Gene ID
192331
Gene Symbol
snrpd1
Alias
CHUNP6882|fk26a01|wu:fk26a01|zgc:86929
Full Name
small nuclear ribonucleoprotein D1 polypeptide
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Plus strand
Length
4953 bases
Position
chr19:1872794-1877746
Accession
ZDB-GENE-020419-14
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000120135LSMPF01423.225e-1911
ENSDARP00000027770LSMPF01423.228.6e-1911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000145246-768-ENSDARP0000012013595 (aa)-B8JKY9
ENSDART00000013217-732-ENSDARP00000027770119 (aa)-Q8JHH1
Gene Model
Click here to download ENSDARG00000011648's gene model file
Pathways
Pathway IDPathway NameSource
dre03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000011648's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000011648snrpd17133.803ENSDARG00000013800snrpd36531.325
ENSDARG00000011648snrpd17133.803ENSDARG00000042452p2rx4b6531.325
ENSDARG00000011648snrpd17133.803ENSDARG00000076283snrpd3l6531.325
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000011648snrpd110097.479ENSG00000167088SNRPD110097.479Homo_sapiens
ENSDARG00000011648snrpd110099.160ENSAPOG00000019446snrpd16599.160Acanthochromis_polyacanthus
ENSDARG00000011648snrpd19895.726ENSAMEG00000002576SNRPD110095.726Ailuropoda_melanoleuca
ENSDARG00000011648snrpd19499.107ENSACIG00000011263snrpd110099.107Amphilophus_citrinellus
ENSDARG00000011648snrpd110099.160ENSAOCG00000007406snrpd110099.160Amphiprion_ocellaris
ENSDARG00000011648snrpd110094.958ENSAPEG00000014961snrpd110094.958Amphiprion_percula
ENSDARG00000011648snrpd19499.107ENSAPEG00000012539SNRPD110099.107Amphiprion_percula
ENSDARG00000011648snrpd110099.160ENSATEG00000014399snrpd110099.160Anabas_testudineus
ENSDARG00000011648snrpd19797.391ENSAPLG00000012256SNRPD19797.391Anas_platyrhynchos
ENSDARG00000011648snrpd110097.479ENSACAG00000006364SNRPD110097.479Anolis_carolinensis
ENSDARG00000011648snrpd110097.479ENSANAG00000025641SNRPD110097.479Aotus_nancymaae
ENSDARG00000011648snrpd19499.107ENSACLG00000017406snrpd110099.107Astatotilapia_calliptera
ENSDARG00000011648snrpd1100100.000ENSAMXG00000004589snrpd1100100.000Astyanax_mexicanus
ENSDARG00000011648snrpd110097.479ENSBTAG00000008292SNRPD110097.479Bos_taurus
ENSDARG00000011648snrpd19692.308ENSBTAG00000047266-9493.750Bos_taurus
ENSDARG00000011648snrpd19693.407ENSBTAG00000012376-7294.792Bos_taurus
ENSDARG00000011648snrpd19494.382ENSBTAG00000055316-8191.489Bos_taurus
ENSDARG00000011648snrpd18976.471WBGene00004916snr-37673.958Caenorhabditis_elegans
ENSDARG00000011648snrpd110097.479ENSCJAG00000042955SNRPD110097.479Callithrix_jacchus
ENSDARG00000011648snrpd110097.479ENSCAFG00000018247SNRPD110097.479Canis_familiaris
ENSDARG00000011648snrpd19596.667ENSCAFG00020015914SNRPD17496.842Canis_lupus_dingo
ENSDARG00000011648snrpd110094.958ENSCHIG00000005557SNRPD110094.958Capra_hircus
ENSDARG00000011648snrpd110097.479ENSTSYG00000030028SNRPD110097.479Carlito_syrichta
ENSDARG00000011648snrpd19796.522ENSCAPG00000008103SNRPD19996.522Cavia_aperea
ENSDARG00000011648snrpd110097.479ENSCPOG00000004679SNRPD110097.479Cavia_porcellus
ENSDARG00000011648snrpd19691.209ENSCCAG00000005390-8192.708Cebus_capucinus
ENSDARG00000011648snrpd110096.639ENSCCAG00000020611-10096.639Cebus_capucinus
ENSDARG00000011648snrpd110097.479ENSCCAG00000032658SNRPD110097.479Cebus_capucinus
ENSDARG00000011648snrpd19493.750ENSCCAG00000016652-9493.750Cebus_capucinus
ENSDARG00000011648snrpd110097.479ENSCATG00000039978SNRPD110097.479Cercocebus_atys
ENSDARG00000011648snrpd110097.479ENSCLAG00000008691SNRPD110097.479Chinchilla_lanigera
ENSDARG00000011648snrpd110097.479ENSCSAG00000017654SNRPD110097.479Chlorocebus_sabaeus
ENSDARG00000011648snrpd110097.479ENSCPBG00000023143SNRPD110097.479Chrysemys_picta_bellii
ENSDARG00000011648snrpd18784.337ENSCING00000024100-6984.884Ciona_intestinalis
ENSDARG00000011648snrpd18884.524ENSCSAVG00000004578-7085.057Ciona_savignyi
ENSDARG00000011648snrpd110097.479ENSCGRG00001021055-10097.479Cricetulus_griseus_chok1gshd
ENSDARG00000011648snrpd19473.034ENSCGRG00001009945-8572.917Cricetulus_griseus_chok1gshd
ENSDARG00000011648snrpd110097.479ENSCGRG00000000490-10097.479Cricetulus_griseus_crigri
ENSDARG00000011648snrpd19473.034ENSCGRG00000006224-8572.917Cricetulus_griseus_crigri
ENSDARG00000011648snrpd110097.479ENSCSEG00000018141snrpd110097.479Cynoglossus_semilaevis
ENSDARG00000011648snrpd110099.160ENSCVAG00000000534snrpd110099.160Cyprinodon_variegatus
ENSDARG00000011648snrpd110097.479ENSDNOG00000040310SNRPD110097.479Dasypus_novemcinctus
ENSDARG00000011648snrpd110097.479ENSDORG00000008349Snrpd110097.479Dipodomys_ordii
ENSDARG00000011648snrpd19679.121FBgn0261933SmD17680.851Drosophila_melanogaster
ENSDARG00000011648snrpd17496.591ENSETEG00000011689SNRPD17496.591Echinops_telfairi
ENSDARG00000011648snrpd19492.857ENSEBUG00000003170snrpd19492.857Eptatretus_burgeri
ENSDARG00000011648snrpd19497.321ENSEASG00005002433SNRPD110097.321Equus_asinus_asinus
ENSDARG00000011648snrpd19497.321ENSECAG00000014373SNRPD110097.321Equus_caballus
ENSDARG00000011648snrpd19496.629ENSEEUG00000004987SNRPD110096.629Erinaceus_europaeus
ENSDARG00000011648snrpd19697.802ENSELUG00000000088snrpd17998.936Esox_lucius
ENSDARG00000011648snrpd110097.479ENSFCAG00000012352SNRPD110097.479Felis_catus
ENSDARG00000011648snrpd19497.321ENSFALG00000002646SNRPD110097.321Ficedula_albicollis
ENSDARG00000011648snrpd1100100.000ENSGMOG00000015607snrpd1100100.000Gadus_morhua
ENSDARG00000011648snrpd110097.479ENSGALG00000041334SNRPD110097.479Gallus_gallus
ENSDARG00000011648snrpd110099.160ENSGAFG00000011171snrpd110099.160Gambusia_affinis
ENSDARG00000011648snrpd1100100.000ENSGACG00000005201SNRPD1100100.000Gasterosteus_aculeatus
ENSDARG00000011648snrpd110097.479ENSGAGG00000011197SNRPD110097.479Gopherus_agassizii
ENSDARG00000011648snrpd19690.110ENSGGOG00000026706-8091.667Gorilla_gorilla
ENSDARG00000011648snrpd110097.479ENSGGOG00000041053SNRPD110097.479Gorilla_gorilla
ENSDARG00000011648snrpd110099.160ENSHBUG00000003236snrpd110099.160Haplochromis_burtoni
ENSDARG00000011648snrpd110097.479ENSHGLG00000007152SNRPD110097.479Heterocephalus_glaber_female
ENSDARG00000011648snrpd110097.479ENSHGLG00100008618SNRPD110097.479Heterocephalus_glaber_male
ENSDARG00000011648snrpd110099.160ENSIPUG00000003576snrpd110099.160Ictalurus_punctatus
ENSDARG00000011648snrpd110097.479ENSSTOG00000000485SNRPD110097.479Ictidomys_tridecemlineatus
ENSDARG00000011648snrpd110097.479ENSJJAG00000017698Snrpd110097.479Jaculus_jaculus
ENSDARG00000011648snrpd110099.160ENSKMAG00000005987snrpd110099.160Kryptolebias_marmoratus
ENSDARG00000011648snrpd110099.160ENSLBEG00000003327snrpd110099.160Labrus_bergylta
ENSDARG00000011648snrpd110097.479ENSLACG00000001955SNRPD110097.479Latimeria_chalumnae
ENSDARG00000011648snrpd19896.581ENSLOCG00000002003snrpd110096.581Lepisosteus_oculatus
ENSDARG00000011648snrpd19596.667ENSLAFG00000005819SNRPD19495.495Loxodonta_africana
ENSDARG00000011648snrpd110097.479ENSMFAG00000042080SNRPD110097.479Macaca_fascicularis
ENSDARG00000011648snrpd19697.368ENSMMUG00000003992SNRPD19797.368Macaca_mulatta
ENSDARG00000011648snrpd110097.479ENSMNEG00000041296SNRPD110097.479Macaca_nemestrina
ENSDARG00000011648snrpd110097.479ENSMLEG00000028659SNRPD110097.479Mandrillus_leucophaeus
ENSDARG00000011648snrpd110099.160ENSMAMG00000012971snrpd110099.160Mastacembelus_armatus
ENSDARG00000011648snrpd110099.160ENSMZEG00005004685snrpd110099.160Maylandia_zebra
ENSDARG00000011648snrpd19797.391ENSMGAG00000011598SNRPD19597.391Meleagris_gallopavo
ENSDARG00000011648snrpd19581.111ENSMAUG00000016467-8680.208Mesocricetus_auratus
ENSDARG00000011648snrpd19596.667ENSMAUG00000006829-5996.667Mesocricetus_auratus
ENSDARG00000011648snrpd19581.111ENSMAUG00000016502-8680.208Mesocricetus_auratus
ENSDARG00000011648snrpd110097.479ENSMICG00000044066SNRPD110097.479Microcebus_murinus
ENSDARG00000011648snrpd110097.479ENSMOCG00000017367Snrpd110097.479Microtus_ochrogaster
ENSDARG00000011648snrpd110099.160ENSMMOG00000019089snrpd110099.160Mola_mola
ENSDARG00000011648snrpd110097.479ENSMODG00000021487SNRPD110097.479Monodelphis_domestica
ENSDARG00000011648snrpd110099.160ENSMALG00000014459snrpd110099.160Monopterus_albus
ENSDARG00000011648snrpd110097.479MGP_CAROLIEiJ_G0021994Snrpd110097.479Mus_caroli
ENSDARG00000011648snrpd110097.479ENSMUSG00000002477Snrpd110097.479Mus_musculus
ENSDARG00000011648snrpd110097.479MGP_PahariEiJ_G0018731Snrpd110097.479Mus_pahari
ENSDARG00000011648snrpd110097.479MGP_SPRETEiJ_G0022910Snrpd110097.479Mus_spretus
ENSDARG00000011648snrpd110096.639ENSMPUG00000020041-10096.639Mustela_putorius_furo
ENSDARG00000011648snrpd19895.726ENSMPUG00000005567-10095.726Mustela_putorius_furo
ENSDARG00000011648snrpd19696.491ENSMLUG00000009124SNRPD18896.491Myotis_lucifugus
ENSDARG00000011648snrpd110097.479ENSNGAG00000023946Snrpd110097.479Nannospalax_galili
ENSDARG00000011648snrpd19697.802ENSNBRG00000012119snrpd17898.936Neolamprologus_brichardi
ENSDARG00000011648snrpd110094.958ENSNLEG00000031430SNRPD110094.958Nomascus_leucogenys
ENSDARG00000011648snrpd110097.479ENSODEG00000005764SNRPD110097.479Octodon_degus
ENSDARG00000011648snrpd110099.160ENSONIG00000002486snrpd110099.160Oreochromis_niloticus
ENSDARG00000011648snrpd19587.778ENSOANG00000004638-8286.735Ornithorhynchus_anatinus
ENSDARG00000011648snrpd19895.726ENSOCUG00000023761-10095.726Oryctolagus_cuniculus
ENSDARG00000011648snrpd110096.639ENSOCUG00000014399-10096.639Oryctolagus_cuniculus
ENSDARG00000011648snrpd19499.107ENSORLG00000012516snrpd110099.107Oryzias_latipes
ENSDARG00000011648snrpd110099.160ENSORLG00020005743snrpd110099.160Oryzias_latipes_hni
ENSDARG00000011648snrpd110099.160ENSORLG00015013402snrpd110099.160Oryzias_latipes_hsok
ENSDARG00000011648snrpd110099.160ENSOMEG00000011571snrpd110099.160Oryzias_melastigma
ENSDARG00000011648snrpd110094.118ENSOGAG00000007833SNRPD110094.118Otolemur_garnettii
ENSDARG00000011648snrpd110092.437ENSOARG00000003413-8592.437Ovis_aries
ENSDARG00000011648snrpd110097.479ENSPPAG00000042593SNRPD110097.479Pan_paniscus
ENSDARG00000011648snrpd19471.429ENSPPRG00000005009-9271.429Panthera_pardus
ENSDARG00000011648snrpd110097.479ENSPPRG00000002399SNRPD110097.479Panthera_pardus
ENSDARG00000011648snrpd19697.368ENSPTIG00000013206SNRPD110097.368Panthera_tigris_altaica
ENSDARG00000011648snrpd110097.479ENSPTRG00000009909SNRPD110097.479Pan_troglodytes
ENSDARG00000011648snrpd19689.011ENSPTRG00000050159-8791.176Pan_troglodytes
ENSDARG00000011648snrpd110097.479ENSPANG00000023478SNRPD110097.479Papio_anubis
ENSDARG00000011648snrpd110097.479ENSPKIG00000003985SNRPD110097.479Paramormyrops_kingsleyae
ENSDARG00000011648snrpd19498.214ENSPKIG00000021610snrpd110098.214Paramormyrops_kingsleyae
ENSDARG00000011648snrpd110099.160ENSPMGG00000001862snrpd110099.160Periophthalmus_magnuspinnatus
ENSDARG00000011648snrpd110097.479ENSPEMG00000014773-10097.479Peromyscus_maniculatus_bairdii
ENSDARG00000011648snrpd19682.796ENSPMAG00000003938-8582.692Petromyzon_marinus
ENSDARG00000011648snrpd110097.479ENSPCIG00000020320SNRPD110097.479Phascolarctos_cinereus
ENSDARG00000011648snrpd110094.118ENSPFOG00000012448SNRPD110094.118Poecilia_formosa
ENSDARG00000011648snrpd110094.118ENSPLAG00000006738snrpd110094.118Poecilia_latipinna
ENSDARG00000011648snrpd110094.118ENSPMEG00000021942snrpd110094.118Poecilia_mexicana
ENSDARG00000011648snrpd110099.160ENSPREG00000007094snrpd110099.160Poecilia_reticulata
ENSDARG00000011648snrpd110097.479ENSPPYG00000025874SNRPD110097.479Pongo_abelii
ENSDARG00000011648snrpd110097.479ENSPCOG00000013327SNRPD110097.479Propithecus_coquereli
ENSDARG00000011648snrpd110097.479ENSPVAG00000005511SNRPD18097.479Pteropus_vampyrus
ENSDARG00000011648snrpd110099.160ENSPNAG00000017824snrpd110099.160Pygocentrus_nattereri
ENSDARG00000011648snrpd110097.479ENSRNOG00000013714Snrpd110097.479Rattus_norvegicus
ENSDARG00000011648snrpd110097.479ENSRBIG00000022996SNRPD110097.479Rhinopithecus_bieti
ENSDARG00000011648snrpd110097.479ENSRROG00000027640SNRPD110097.479Rhinopithecus_roxellana
ENSDARG00000011648snrpd110097.479ENSSBOG00000020998SNRPD110097.479Saimiri_boliviensis_boliviensis
ENSDARG00000011648snrpd110097.479ENSSHAG00000011791SNRPD110097.479Sarcophilus_harrisii
ENSDARG00000011648snrpd110098.319ENSSFOG00015022253-10098.319Scleropages_formosus
ENSDARG00000011648snrpd110098.319ENSSFOG00015008809-10098.319Scleropages_formosus
ENSDARG00000011648snrpd110098.319ENSSMAG00000008765snrpd110098.319Scophthalmus_maximus
ENSDARG00000011648snrpd19797.414ENSSDUG00000010521snrpd19897.414Seriola_dumerili
ENSDARG00000011648snrpd110099.160ENSSLDG00000011858snrpd110099.160Seriola_lalandi_dorsalis
ENSDARG00000011648snrpd17197.015ENSSARG00000004271SNRPD110097.015Sorex_araneus
ENSDARG00000011648snrpd110097.479ENSSPUG00000002824SNRPD110097.479Sphenodon_punctatus
ENSDARG00000011648snrpd19499.107ENSSPAG00000015229snrpd110099.107Stegastes_partitus
ENSDARG00000011648snrpd110097.479ENSSSCG00000003701SNRPD110097.479Sus_scrofa
ENSDARG00000011648snrpd19797.391ENSTGUG00000005095SNRPD19797.391Taeniopygia_guttata
ENSDARG00000011648snrpd19499.107ENSTRUG00000008977snrpd110099.107Takifugu_rubripes
ENSDARG00000011648snrpd18194.792ENSTNIG00000001224snrpd19294.792Tetraodon_nigroviridis
ENSDARG00000011648snrpd17496.591ENSTBEG00000013776SNRPD110096.591Tupaia_belangeri
ENSDARG00000011648snrpd19797.391ENSTTRG00000002654SNRPD110097.391Tursiops_truncatus
ENSDARG00000011648snrpd19697.368ENSUAMG00000013431SNRPD19797.368Ursus_americanus
ENSDARG00000011648snrpd110097.479ENSUMAG00000019740SNRPD110097.479Ursus_maritimus
ENSDARG00000011648snrpd110097.479ENSVPAG00000010056SNRPD18097.479Vicugna_pacos
ENSDARG00000011648snrpd19497.321ENSVVUG00000004009SNRPD110097.321Vulpes_vulpes
ENSDARG00000011648snrpd19495.536ENSXETG00000027354snrpd19495.536Xenopus_tropicalis
ENSDARG00000011648snrpd110099.160ENSXCOG00000020108snrpd110099.160Xiphophorus_couchianus
ENSDARG00000011648snrpd110099.160ENSXMAG00000003368snrpd110099.160Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000243commitment complex21873635.IBAComponent
GO:0000387spliceosomal snRNP assembly21873635.IBAProcess
GO:0000387spliceosomal snRNP assembly-IEAProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0005634nucleus-IEAComponent
GO:0005682U5 snRNP21873635.IBAComponent
GO:0005685U1 snRNP21873635.IBAComponent
GO:0005686U2 snRNP21873635.IBAComponent
GO:0005687U4 snRNP21873635.IBAComponent
GO:0005689U12-type spliceosomal complex21873635.IBAComponent
GO:0006396RNA processing-IEAProcess
GO:0006397mRNA processing-IEAProcess
GO:0007507heart development19652097.IMPProcess
GO:0008380RNA splicing-IEAProcess
GO:0019012virion-IEAComponent
GO:0019013viral nucleocapsid-IEAComponent
GO:0034715pICln-Sm protein complex21873635.IBAComponent
GO:0034719SMN-Sm protein complex21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent

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