EuRBPDB

Description
Ensembl ID
ENSDARG00000012222 (Gene tree)
Gene ID
337461
Gene Symbol
nup35
Alias
fj68d11|wu:fj68d11|zgc:65979
Full Name
nucleoporin 35
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
142403 bases
Position
chr9:12259469-12401871
Accession
ZDB-GENE-030131-9407
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein ID
Domain
Pfam ID
E-value
Domain number
Total number
ENSDARP00000149133Nup35_RRMPF05172.132.5e-2611
ENSDARP00000033355Nup35_RRMPF05172.132.6e-2611
ENSDARP00000123351Nup35_RRMPF05172.131.3e-2111
ENSDARP00000117749Nup35_RRMPF05172.133e-1812
ENSDARP00000117749Nup35_RRMPF05172.133e-1822
ENSDARP00000123351Nup35_RRM_2PF14605.67.5e-1111
ENSDARP00000149133Nup35_RRM_2PF14605.61.1e-1011
ENSDARP00000033355Nup35_RRM_2PF14605.61.2e-1011
Transcripts
Transcript ID
Name
Length
RefSeq ID
Protein ID
Length
RefSeq ID
UniportKB ID
ENSDART00000136558-710-ENSDARP00000117749230 (aa)-B0R0Z4
ENSDART00000144734-759-ENSDARP00000123351227 (aa)-B0R0Z3
ENSDART00000032344-1756XM_009304508ENSDARP00000033355308 (aa)XP_009302783Q6P6X9
ENSDART00000191901-3205-ENSDARP00000149133299 (aa)-A0A2R8Q7N6
ENSDART00000131766-532-ENSDARP00000116419112 (aa)-B0R0Z6
Gene Model
Pathways
Pathway ID
Pathway Name
Source
dre03013RNA transportKEGG
Protein-Protein Interaction (PPI)
Orthologs
Ensembl ID
Gene Symbol
Coverage
Identiy
Ortholog
Gene Symbol
Coverage
Identiy
Species
ENSDARG00000012222nup3510074.434ENSG00000163002NUP3510081.579Homo_sapiens
ENSDARG00000012222nup3510063.344ENSAPOG00000003630nup3510063.125Acanthochromis_polyacanthus
ENSDARG00000012222nup3510072.436ENSAMEG00000001191NUP359572.611Ailuropoda_melanoleuca
ENSDARG00000012222nup358464.032ENSACIG00000023984nup359864.427Amphilophus_citrinellus
ENSDARG00000012222nup3510064.821ENSAOCG00000007484nup3510064.557Amphiprion_ocellaris
ENSDARG00000012222nup3510063.666ENSAPEG00000020027nup3510064.669Amphiprion_percula
ENSDARG00000012222nup3510066.447ENSATEG00000019305nup3510065.312Anabas_testudineus
ENSDARG00000012222nup3510075.081ENSAPLG00000009161NUP359774.132Anas_platyrhynchos
ENSDARG00000012222nup3510072.727ENSACAG00000008692NUP359572.903Anolis_carolinensis
ENSDARG00000012222nup3510074.110ENSANAG00000021090NUP359574.277Aotus_nancymaae
ENSDARG00000012222nup3510065.161ENSACLG00000013918nup3510064.890Astatotilapia_calliptera
ENSDARG00000012222nup3510081.311ENSAMXG00000003371nup3510081.311Astyanax_mexicanus
ENSDARG00000012222nup3510073.226ENSBTAG00000009777NUP359573.397Bos_taurus
ENSDARG00000012222nup3510074.434ENSCJAG00000011104NUP359574.598Callithrix_jacchus
ENSDARG00000012222nup3510073.077ENSCAFG00000031849NUP3510073.077Canis_familiaris
ENSDARG00000012222nup3510073.077ENSCAFG00020008408NUP359573.248Canis_lupus_dingo
ENSDARG00000012222nup3510073.226ENSCHIG00000023148NUP3510073.226Capra_hircus
ENSDARG00000012222nup3510074.757ENSTSYG00000002117NUP359574.920Carlito_syrichta
ENSDARG00000012222nup3510058.974ENSCAPG00000005703NUP359760.191Cavia_aperea
ENSDARG00000012222nup3510072.903ENSCPOG00000011906NUP359774.038Cavia_porcellus
ENSDARG00000012222nup3510074.434ENSCCAG00000025009NUP359678.646Cebus_capucinus
ENSDARG00000012222nup3510063.844ENSCATG00000033109NUP359564.078Cercocebus_atys
ENSDARG00000012222nup3510073.871ENSCLAG00000012559NUP359574.038Chinchilla_lanigera
ENSDARG00000012222nup3510074.110ENSCSAG00000012620NUP359574.277Chlorocebus_sabaeus
ENSDARG00000012222nup3510074.516ENSCPBG00000001303NUP359675.000Chrysemys_picta_bellii
ENSDARG00000012222nup359941.975ENSCING00000009659-9842.378Ciona_intestinalis
ENSDARG00000012222nup359941.667ENSCSAVG00000007467-9942.012Ciona_savignyi
ENSDARG00000012222nup3510074.110ENSCANG00000030785NUP359877.436Colobus_angolensis_palliatus
ENSDARG00000012222nup3510072.403ENSCGRG00001018638-9572.581Cricetulus_griseus_chok1gshd
ENSDARG00000012222nup3510072.403ENSCGRG00000011313-9572.581Cricetulus_griseus_crigri
ENSDARG00000012222nup3510064.610ENSCSEG00000000938nup3510064.353Cynoglossus_semilaevis
ENSDARG00000012222nup3510065.957ENSCVAG00000001792nup3510064.286Cyprinodon_variegatus
ENSDARG00000012222nup3510072.581ENSDNOG00000038754-9572.756Dasypus_novemcinctus
ENSDARG00000012222nup3510073.226ENSDNOG00000009513-8473.397Dasypus_novemcinctus
ENSDARG00000012222nup3510072.816ENSDORG00000010458-9772.990Dipodomys_ordii
ENSDARG00000012222nup3510072.903ENSETEG00000005896NUP359973.077Echinops_telfairi
ENSDARG00000012222nup359759.821ENSEBUG00000013034nup359856.563Eptatretus_burgeri
ENSDARG00000012222nup3510073.226ENSEASG00005022100NUP359573.397Equus_asinus_asinus
ENSDARG00000012222nup3510073.226ENSECAG00000003968NUP3510073.226Equus_caballus
ENSDARG00000012222nup3510065.484ENSEEUG00000008469NUP359565.705Erinaceus_europaeus
ENSDARG00000012222nup3510079.016ENSELUG00000013693nup3510079.016Esox_lucius
ENSDARG00000012222nup3510072.115ENSFCAG00000025636NUP3510072.756Felis_catus
ENSDARG00000012222nup3510072.258ENSFALG00000013175NUP359673.077Ficedula_albicollis
ENSDARG00000012222nup3510073.463ENSFDAG00000017998NUP359573.633Fukomys_damarensis
ENSDARG00000012222nup3510066.239ENSFHEG00000010229nup3510065.931Fundulus_heteroclitus
ENSDARG00000012222nup358360.938ENSGMOG00000003337nup3510060.938Gadus_morhua
ENSDARG00000012222nup3510073.871ENSGALG00000002689NUP359674.038Gallus_gallus
ENSDARG00000012222nup3510065.260ENSGAFG00000022048nup3510065.300Gambusia_affinis
ENSDARG00000012222nup3510062.136ENSGACG00000008203nup3510062.264Gasterosteus_aculeatus
ENSDARG00000012222nup3510074.920ENSGAGG00000001967NUP3510074.920Gopherus_agassizii
ENSDARG00000012222nup3510074.434ENSGGOG00000009919NUP359976.098Gorilla_gorilla
ENSDARG00000012222nup3510056.494ENSHGLG00000000414-9656.774Heterocephalus_glaber_female
ENSDARG00000012222nup359762.882ENSHGLG00000008616-9061.695Heterocephalus_glaber_female
ENSDARG00000012222nup3510072.581ENSHGLG00000013230NUP359572.756Heterocephalus_glaber_female
ENSDARG00000012222nup3510056.494ENSHGLG00100010869-9656.774Heterocephalus_glaber_male
ENSDARG00000012222nup3510072.581ENSHGLG00100012840NUP359572.756Heterocephalus_glaber_male
ENSDARG00000012222nup359762.882ENSHGLG00100000091-9161.695Heterocephalus_glaber_male
ENSDARG00000012222nup3510063.696ENSHCOG00000003882nup3510063.462Hippocampus_comes
ENSDARG00000012222nup3510076.496ENSIPUG00000002798nup3510074.921Ictalurus_punctatus
ENSDARG00000012222nup3510071.935ENSSTOG00000000711NUP359572.115Ictidomys_tridecemlineatus
ENSDARG00000012222nup359964.286ENSJJAG00000017434-9564.516Jaculus_jaculus
ENSDARG00000012222nup3510062.623ENSJJAG00000007003-9761.830Jaculus_jaculus
ENSDARG00000012222nup359468.037ENSJJAG00000006387-9364.982Jaculus_jaculus
ENSDARG00000012222nup3510071.521ENSJJAG00000016432-9671.704Jaculus_jaculus
ENSDARG00000012222nup3510063.983ENSKMAG00000011162nup3510063.836Kryptolebias_marmoratus
ENSDARG00000012222nup3510053.922ENSLBEG00000012416nup359854.221Labrus_bergylta
ENSDARG00000012222nup3510075.884ENSLACG00000008247NUP3510075.884Latimeria_chalumnae
ENSDARG00000012222nup3510075.570ENSLOCG00000006726nup3510075.949Lepisosteus_oculatus
ENSDARG00000012222nup3510071.111ENSLAFG00000008155NUP359571.293Loxodonta_africana
ENSDARG00000012222nup3510073.786ENSMFAG00000000834NUP3510073.786Macaca_fascicularis
ENSDARG00000012222nup3510074.110ENSMMUG00000004140NUP359974.277Macaca_mulatta
ENSDARG00000012222nup3510074.110ENSMNEG00000029014NUP359574.277Macaca_nemestrina
ENSDARG00000012222nup3510074.110ENSMLEG00000035422NUP359877.436Mandrillus_leucophaeus
ENSDARG00000012222nup3510065.232ENSMAMG00000013232nup3510064.465Mastacembelus_armatus
ENSDARG00000012222nup3510065.273ENSMZEG00005020619nup359863.051Maylandia_zebra
ENSDARG00000012222nup3510072.258ENSMGAG00000004412NUP359572.581Meleagris_gallopavo
ENSDARG00000012222nup3510073.139ENSMAUG00000013776-9573.312Mesocricetus_auratus
ENSDARG00000012222nup3510072.903ENSMICG00000006790NUP3510073.226Microcebus_murinus
ENSDARG00000012222nup3510073.139ENSMOCG00000014754-9573.312Microtus_ochrogaster
ENSDARG00000012222nup3510064.348ENSMMOG00000005026nup3510063.987Mola_mola
ENSDARG00000012222nup3510072.581ENSMODG00000010578NUP359572.756Monodelphis_domestica
ENSDARG00000012222nup3510065.894ENSMALG00000020187nup3510065.595Monopterus_albus
ENSDARG00000012222nup3510071.521MGP_CAROLIEiJ_G0023709-9571.704Mus_caroli
ENSDARG00000012222nup3510071.197ENSMUSG00000026999Nup359571.197Mus_musculus
ENSDARG00000012222nup3510072.168MGP_PahariEiJ_G0025160-9572.347Mus_pahari
ENSDARG00000012222nup358661.873MGP_SPRETEiJ_G0033063-9961.873Mus_spretus
ENSDARG00000012222nup3510072.756ENSMPUG00000002063NUP359573.567Mustela_putorius_furo
ENSDARG00000012222nup3510074.516ENSMLUG00000013154NUP359574.679Myotis_lucifugus
ENSDARG00000012222nup3510072.168ENSNGAG00000012107-9572.347Nannospalax_galili
ENSDARG00000012222nup3510065.652ENSNBRG00000020466nup359865.714Neolamprologus_brichardi
ENSDARG00000012222nup3510074.434ENSNLEG00000035026NUP3510074.434Nomascus_leucogenys
ENSDARG00000012222nup356854.545ENSMEUG00000003001-6454.545Notamacropus_eugenii
ENSDARG00000012222nup358370.229ENSOPRG00000016609NUP357870.229Ochotona_princeps
ENSDARG00000012222nup359951.656ENSODEG00000000280-9451.974Octodon_degus
ENSDARG00000012222nup3510073.226ENSODEG00000011202-9971.827Octodon_degus
ENSDARG00000012222nup3510064.725ENSONIG00000016251nup3510063.889Oreochromis_niloticus
ENSDARG00000012222nup359771.739ENSOANG00000006793-9675.214Ornithorhynchus_anatinus
ENSDARG00000012222nup3510073.139ENSOCUG00000014407NUP359573.312Oryctolagus_cuniculus
ENSDARG00000012222nup3510064.831ENSORLG00000013588nup3510064.650Oryzias_latipes
ENSDARG00000012222nup3510064.831ENSORLG00020008201nup3510064.396Oryzias_latipes_hni
ENSDARG00000012222nup3510064.831ENSORLG00015011096nup3510064.331Oryzias_latipes_hsok
ENSDARG00000012222nup3510063.248ENSOMEG00000007628nup3510062.928Oryzias_melastigma
ENSDARG00000012222nup3510071.935ENSOGAG00000011920NUP359572.436Otolemur_garnettii
ENSDARG00000012222nup3510073.226ENSOARG00000016728NUP359573.397Ovis_aries
ENSDARG00000012222nup3510074.434ENSPPAG00000036316NUP359976.098Pan_paniscus
ENSDARG00000012222nup3510072.436ENSPPRG00000024726NUP3510073.077Panthera_pardus
ENSDARG00000012222nup3510072.436ENSPTIG00000017299NUP359573.248Panthera_tigris_altaica
ENSDARG00000012222nup3510074.434ENSPTRG00000012711NUP359976.098Pan_troglodytes
ENSDARG00000012222nup3510074.110ENSPANG00000013686NUP359574.277Papio_anubis
ENSDARG00000012222nup3510081.699ENSPKIG00000022051nup3510081.587Paramormyrops_kingsleyae
ENSDARG00000012222nup3510074.516ENSPSIG00000002146NUP3510074.516Pelodiscus_sinensis
ENSDARG00000012222nup3510061.513ENSPMGG00000022915nup359762.179Periophthalmus_magnuspinnatus
ENSDARG00000012222nup3510073.139ENSPEMG00000014718-9573.312Peromyscus_maniculatus_bairdii
ENSDARG00000012222nup359763.675ENSPMAG00000006604nup359759.190Petromyzon_marinus
ENSDARG00000012222nup3510074.516ENSPCIG00000015482NUP359574.679Phascolarctos_cinereus
ENSDARG00000012222nup3510065.401ENSPFOG00000010020nup3510065.409Poecilia_formosa
ENSDARG00000012222nup3510065.049ENSPLAG00000005867nup3510065.094Poecilia_latipinna
ENSDARG00000012222nup3510066.667ENSPMEG00000010552nup3510065.409Poecilia_mexicana
ENSDARG00000012222nup3510066.667ENSPREG00000021005nup3510066.346Poecilia_reticulata
ENSDARG00000012222nup3510074.434ENSPPYG00000012998-7674.598Pongo_abelii
ENSDARG00000012222nup359758.515ENSPCAG00000000605NUP359551.572Procavia_capensis
ENSDARG00000012222nup3510073.226ENSPCOG00000024097NUP359573.718Propithecus_coquereli
ENSDARG00000012222nup3510072.903ENSPVAG00000015908NUP359573.077Pteropus_vampyrus
ENSDARG00000012222nup3510066.447ENSPNYG00000012486nup359466.667Pundamilia_nyererei
ENSDARG00000012222nup3510082.566ENSPNAG00000005181nup359782.736Pygocentrus_nattereri
ENSDARG00000012222nup3510072.816ENSRNOG00000009290Nup359572.990Rattus_norvegicus
ENSDARG00000012222nup3510074.110ENSRBIG00000039427NUP359877.436Rhinopithecus_bieti
ENSDARG00000012222nup3510074.110ENSRROG00000026525NUP359877.436Rhinopithecus_roxellana
ENSDARG00000012222nup3510074.110ENSSBOG00000018676NUP3510074.519Saimiri_boliviensis_boliviensis
ENSDARG00000012222nup3510075.484ENSSHAG00000009746NUP359575.641Sarcophilus_harrisii
ENSDARG00000012222nup3510084.262ENSSFOG00015002390nup3510083.439Scleropages_formosus
ENSDARG00000012222nup3510066.957ENSSMAG00000015651nup3510065.916Scophthalmus_maximus
ENSDARG00000012222nup3510065.894ENSSDUG00000013118nup3510065.094Seriola_dumerili
ENSDARG00000012222nup3510065.049ENSSLDG00000018249nup359765.273Seriola_lalandi_dorsalis
ENSDARG00000012222nup359761.504ENSSARG00000001535-9954.984Sorex_araneus
ENSDARG00000012222nup3510071.935ENSSPUG00000018651NUP359672.115Sphenodon_punctatus
ENSDARG00000012222nup3510065.449ENSSPAG00000018264nup3510065.287Stegastes_partitus
ENSDARG00000012222nup3510073.226ENSSSCG00000028949NUP359573.397Sus_scrofa
ENSDARG00000012222nup3510071.474ENSTGUG00000011278NUP359671.656Taeniopygia_guttata
ENSDARG00000012222nup3510062.821ENSTRUG00000014111nup3510061.224Takifugu_rubripes
ENSDARG00000012222nup3510056.146ENSTNIG00000011568nup359456.436Tetraodon_nigroviridis
ENSDARG00000012222nup3510070.645ENSTBEG00000003328NUP359570.833Tupaia_belangeri
ENSDARG00000012222nup3510062.662ENSTTRG00000002512NUP359562.903Tursiops_truncatus
ENSDARG00000012222nup356377.083ENSUAMG00000018696-9377.083Ursus_americanus
ENSDARG00000012222nup359771.179ENSUMAG00000017104NUP359572.069Ursus_maritimus
ENSDARG00000012222nup3510073.226ENSVPAG00000011898NUP359573.397Vicugna_pacos
ENSDARG00000012222nup3510072.756ENSVVUG00000016832NUP3510072.756Vulpes_vulpes
ENSDARG00000012222nup3510063.871ENSXETG00000001335nup359564.103Xenopus_tropicalis
ENSDARG00000012222nup3510065.823ENSXMAG00000000409nup3510065.723Xiphophorus_maculatus
Gene Ontology
Go ID
Go_term
PubmedID
Evidence
Category
GO:0003676nucleic acid binding-IEAFunction
GO:0003697single-stranded DNA binding21873635.IBAFunction
GO:0005543phospholipid binding21873635.IBAFunction
GO:0005634nucleus-IEAComponent
GO:0005643nuclear pore-IEAComponent
GO:0006607NLS-bearing protein import into nucleus21873635.IBAProcess
GO:0006913nucleocytoplasmic transport-IEAProcess
GO:0006999nuclear pore organization21873635.IBAProcess
GO:0015031protein transport-IEAProcess
GO:0017056structural constituent of nuclear pore21873635.IBAFunction
GO:0031965nuclear membrane-IEAComponent
GO:0044613nuclear pore central transport channel21873635.IBAComponent
GO:0044615nuclear pore nuclear basket21873635.IBAComponent
GO:0051028mRNA transport-IEAProcess