EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000012274 (Gene tree)
Gene ID: 550549
Gene Symbol: eif4e1c
Alias: eif4E-1C|fb57e09|wu:fb57e09|zgc:110154
Full Name: eukaryotic translation initiation factor 4E family member 1c
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 13060 bases
Position: chr13:18311410-18324469
Accession: ZDB-GENE-050417-398
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000031553	IF4E	PF01652.18	5.9e-57	1	1
ENSDARP00000119224	IF4E	PF01652.18	7.5e-57	1	1
ENSDARP00000150557	IF4E	PF01652.18	1.1e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000180947	-	356	XM_021480575	ENSDARP00000150557	117 (aa)	XP_021336250	Q568Q8
ENSDART00000145506	-	868	-	-	- (aa)	-	-
ENSDART00000036718	-	1815	-	ENSDARP00000031553	213 (aa)	-	A9JT06
ENSDART00000108764	-	1645	-	ENSDARP00000124732	88 (aa)	-	F8W2H1
ENSDART00000132073	-	1005	XM_005156639	ENSDARP00000119224	230 (aa)	XP_005156696	B8A6A1
ENSDART00000141724	-	196	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000012274's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG
dre04150	mTOR signaling pathway	KEGG
dre04910	Insulin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000012274's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000012274	eif4e1c	97	31.897	ENSDARG00000005078	eif4e3	84	31.088
ENSDARG00000012274	eif4e1c	100	59.829	ENSDARG00000014565	eif4e1b	100	65.574
ENSDARG00000012274	eif4e1c	100	70.940	ENSDARG00000077012	eif4ea	100	68.664
ENSDARG00000012274	eif4e1c	100	70.085	ENSDARG00000013274	eif4eb	100	68.349
ENSDARG00000012274	eif4e1c	97	33.628	ENSDARG00000015835	eif4e2rs1	78	34.973
ENSDARG00000012274	eif4e1c	89	35.897	ENSDARG00000038585	eif4e2	86	39.024

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000012274	eif4e1c	100	92.308	ENSAPOG00000019534	eif4e1c	100	89.202	Acanthochromis_polyacanthus
ENSDARG00000012274	eif4e1c	100	92.308	ENSACIG00000021242	eif4e1c	99	93.820	Amphilophus_citrinellus
ENSDARG00000012274	eif4e1c	100	93.162	ENSAOCG00000004344	eif4e1c	100	89.671	Amphiprion_ocellaris
ENSDARG00000012274	eif4e1c	100	93.162	ENSAPEG00000013289	eif4e1c	100	89.671	Amphiprion_percula
ENSDARG00000012274	eif4e1c	100	89.744	ENSATEG00000001670	eif4e1c	98	92.147	Anabas_testudineus
ENSDARG00000012274	eif4e1c	100	92.308	ENSACLG00000011119	eif4e1c	100	89.202	Astatotilapia_calliptera
ENSDARG00000012274	eif4e1c	100	97.436	ENSAMXG00000029997	eif4e1c	100	93.897	Astyanax_mexicanus
ENSDARG00000012274	eif4e1c	96	47.321	WBGene00002061	ife-3	75	52.151	Caenorhabditis_elegans
ENSDARG00000012274	eif4e1c	100	92.308	ENSCSEG00000006680	eif4e1c	98	85.185	Cynoglossus_semilaevis
ENSDARG00000012274	eif4e1c	100	90.598	ENSCVAG00000013853	eif4e1c	100	86.854	Cyprinodon_variegatus
ENSDARG00000012274	eif4e1c	100	91.453	ENSELUG00000022791	eif4e1c	100	85.455	Esox_lucius
ENSDARG00000012274	eif4e1c	100	89.744	ENSFHEG00000002097	eif4e1c	100	86.854	Fundulus_heteroclitus
ENSDARG00000012274	eif4e1c	100	91.453	ENSGMOG00000006731	eif4e1c	99	87.562	Gadus_morhua
ENSDARG00000012274	eif4e1c	100	89.744	ENSGAFG00000009446	eif4e1c	100	87.324	Gambusia_affinis
ENSDARG00000012274	eif4e1c	100	90.598	ENSGACG00000007799	eif4e1c	100	90.598	Gasterosteus_aculeatus
ENSDARG00000012274	eif4e1c	100	92.308	ENSHBUG00000022939	eif4e1c	100	89.202	Haplochromis_burtoni
ENSDARG00000012274	eif4e1c	100	84.615	ENSHCOG00000004116	eif4e1c	100	83.568	Hippocampus_comes
ENSDARG00000012274	eif4e1c	100	94.017	ENSIPUG00000005027	if4e	100	92.488	Ictalurus_punctatus
ENSDARG00000012274	eif4e1c	100	89.744	ENSKMAG00000004557	eif4e1c	100	86.385	Kryptolebias_marmoratus
ENSDARG00000012274	eif4e1c	100	92.308	ENSLBEG00000007011	eif4e1c	100	89.671	Labrus_bergylta
ENSDARG00000012274	eif4e1c	98	67.757	ENSLACG00000015230	eif4e1c	98	67.757	Latimeria_chalumnae
ENSDARG00000012274	eif4e1c	100	90.598	ENSLOCG00000009334	eif4e1c	98	88.732	Lepisosteus_oculatus
ENSDARG00000012274	eif4e1c	100	92.308	ENSMAMG00000000450	eif4e1c	100	88.263	Mastacembelus_armatus
ENSDARG00000012274	eif4e1c	100	92.308	ENSMZEG00005027687	eif4e1c	100	89.202	Maylandia_zebra
ENSDARG00000012274	eif4e1c	100	88.034	ENSMMOG00000010487	eif4e1c	100	84.507	Mola_mola
ENSDARG00000012274	eif4e1c	100	90.598	ENSMALG00000018219	eif4e1c	100	85.915	Monopterus_albus
ENSDARG00000012274	eif4e1c	100	92.308	ENSNBRG00000020784	eif4e1c	98	86.854	Neolamprologus_brichardi
ENSDARG00000012274	eif4e1c	100	92.308	ENSONIG00000018400	eif4e1c	100	89.202	Oreochromis_niloticus
ENSDARG00000012274	eif4e1c	100	86.325	ENSORLG00000019400	eif4e1c	100	82.629	Oryzias_latipes
ENSDARG00000012274	eif4e1c	100	86.325	ENSORLG00020003856	eif4e1c	100	83.099	Oryzias_latipes_hni
ENSDARG00000012274	eif4e1c	100	86.325	ENSORLG00015009011	eif4e1c	100	83.099	Oryzias_latipes_hsok
ENSDARG00000012274	eif4e1c	100	88.889	ENSOMEG00000003911	eif4e1c	100	86.385	Oryzias_melastigma
ENSDARG00000012274	eif4e1c	100	88.034	ENSPKIG00000009484	eif4e1c	100	86.538	Paramormyrops_kingsleyae
ENSDARG00000012274	eif4e1c	100	94.017	ENSPMGG00000010390	eif4e1c	98	84.444	Periophthalmus_magnuspinnatus
ENSDARG00000012274	eif4e1c	100	89.744	ENSPFOG00000002854	eif4e1c	100	86.854	Poecilia_formosa
ENSDARG00000012274	eif4e1c	100	89.744	ENSPLAG00000009606	eif4e1c	100	86.854	Poecilia_latipinna
ENSDARG00000012274	eif4e1c	100	89.744	ENSPMEG00000003072	eif4e1c	100	86.854	Poecilia_mexicana
ENSDARG00000012274	eif4e1c	100	89.744	ENSPREG00000018571	eif4e1c	98	90.674	Poecilia_reticulata
ENSDARG00000012274	eif4e1c	100	92.308	ENSPNYG00000007444	eif4e1c	100	88.732	Pundamilia_nyererei
ENSDARG00000012274	eif4e1c	100	95.726	ENSPNAG00000027050	eif4e1c	100	93.897	Pygocentrus_nattereri
ENSDARG00000012274	eif4e1c	100	91.453	ENSSFOG00015002672	eif4e1c	100	89.202	Scleropages_formosus
ENSDARG00000012274	eif4e1c	100	91.453	ENSSMAG00000002255	eif4e1c	100	88.785	Scophthalmus_maximus
ENSDARG00000012274	eif4e1c	100	93.162	ENSSDUG00000009117	eif4e1c	100	89.720	Seriola_dumerili
ENSDARG00000012274	eif4e1c	100	93.162	ENSSLDG00000019869	eif4e1c	100	89.720	Seriola_lalandi_dorsalis
ENSDARG00000012274	eif4e1c	100	92.308	ENSSPAG00000021325	eif4e1c	88	89.671	Stegastes_partitus
ENSDARG00000012274	eif4e1c	100	88.034	ENSTRUG00000024897	eif4e1c	100	85.446	Takifugu_rubripes
ENSDARG00000012274	eif4e1c	100	87.179	ENSTNIG00000008670	eif4e1c	100	74.178	Tetraodon_nigroviridis
ENSDARG00000012274	eif4e1c	100	90.598	ENSXCOG00000012418	eif4e1c	100	87.793	Xiphophorus_couchianus
ENSDARG00000012274	eif4e1c	100	90.598	ENSXMAG00000023567	eif4e1c	100	87.793	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000340	RNA 7-methylguanosine cap binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003743	translation initiation factor activity	21873635.	IBA	Function
GO:0003743	translation initiation factor activity	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0006412	translation	-	IEA	Process
GO:0006413	translational initiation	-	IEA	Process
GO:0016281	eukaryotic translation initiation factor 4F complex	21873635.	IBA	Component