EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000012572 (Gene tree)
Gene ID: 394162
Gene Symbol: polr3f
Alias: zgc:56299|zgc:76983
Full Name: polymerase (RNA) III (DNA directed) polypeptide F
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 8364 bases
Position: chr22:25034740-25043103
Accession: ZDB-GENE-040426-972
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000004882	RNA_pol_Rpc34	PF05158.12	6.6e-102	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000015512	-	1453	-	ENSDARP00000004882	314 (aa)	-	Q6NYQ9

Gene Model

Click here to download ENSDARG00000012572's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03020	RNA polymerase	KEGG
dre04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000012572's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000012572	polr3f	100	88.608	ENSG00000132664	POLR3F	100	88.608	Homo_sapiens
ENSDARG00000012572	polr3f	100	90.506	ENSAPOG00000008271	polr3f	100	90.506	Acanthochromis_polyacanthus
ENSDARG00000012572	polr3f	100	88.291	ENSAMEG00000005222	POLR3F	100	88.291	Ailuropoda_melanoleuca
ENSDARG00000012572	polr3f	100	85.669	ENSACIG00000006705	polr3f	100	85.669	Amphilophus_citrinellus
ENSDARG00000012572	polr3f	100	90.506	ENSAOCG00000000687	polr3f	100	90.506	Amphiprion_ocellaris
ENSDARG00000012572	polr3f	100	90.190	ENSAPEG00000015263	polr3f	100	90.190	Amphiprion_percula
ENSDARG00000012572	polr3f	88	93.455	ENSATEG00000015539	polr3f	100	93.455	Anabas_testudineus
ENSDARG00000012572	polr3f	88	90.182	ENSAPLG00000005533	POLR3F	100	90.182	Anas_platyrhynchos
ENSDARG00000012572	polr3f	98	86.731	ENSACAG00000014293	POLR3F	99	86.731	Anolis_carolinensis
ENSDARG00000012572	polr3f	100	88.291	ENSANAG00000026726	POLR3F	100	88.291	Aotus_nancymaae
ENSDARG00000012572	polr3f	100	91.772	ENSACLG00000003615	polr3f	100	91.772	Astatotilapia_calliptera
ENSDARG00000012572	polr3f	100	94.586	ENSAMXG00000036020	polr3f	100	94.586	Astyanax_mexicanus
ENSDARG00000012572	polr3f	100	87.975	ENSBTAG00000008825	POLR3F	100	87.975	Bos_taurus
ENSDARG00000012572	polr3f	98	33.442	WBGene00021112	W09C3.4	98	33.442	Caenorhabditis_elegans
ENSDARG00000012572	polr3f	100	88.291	ENSCJAG00000005159	POLR3F	100	88.291	Callithrix_jacchus
ENSDARG00000012572	polr3f	100	87.975	ENSCAFG00000005420	POLR3F	100	87.975	Canis_familiaris
ENSDARG00000012572	polr3f	100	87.975	ENSCAFG00020027500	POLR3F	100	87.975	Canis_lupus_dingo
ENSDARG00000012572	polr3f	100	87.975	ENSCHIG00000014743	POLR3F	100	87.975	Capra_hircus
ENSDARG00000012572	polr3f	100	87.975	ENSTSYG00000004207	POLR3F	100	87.975	Carlito_syrichta
ENSDARG00000012572	polr3f	94	50.000	ENSCAPG00000008423	POLR3F	100	50.000	Cavia_aperea
ENSDARG00000012572	polr3f	100	87.975	ENSCPOG00000002400	POLR3F	100	87.975	Cavia_porcellus
ENSDARG00000012572	polr3f	100	78.481	ENSCCAG00000021800	POLR3F	100	78.481	Cebus_capucinus
ENSDARG00000012572	polr3f	100	88.291	ENSCATG00000019507	POLR3F	100	88.291	Cercocebus_atys
ENSDARG00000012572	polr3f	100	88.291	ENSCLAG00000016296	POLR3F	100	88.291	Chinchilla_lanigera
ENSDARG00000012572	polr3f	100	88.291	ENSCSAG00000011513	POLR3F	100	88.291	Chlorocebus_sabaeus
ENSDARG00000012572	polr3f	73	88.764	ENSCHOG00000013268	POLR3F	73	88.764	Choloepus_hoffmanni
ENSDARG00000012572	polr3f	88	89.818	ENSCPBG00000023473	POLR3F	100	89.818	Chrysemys_picta_bellii
ENSDARG00000012572	polr3f	99	61.146	ENSCING00000001212	-	99	61.146	Ciona_intestinalis
ENSDARG00000012572	polr3f	71	60.987	ENSCSAVG00000003340	-	99	60.987	Ciona_savignyi
ENSDARG00000012572	polr3f	92	88.316	ENSCANG00000037390	POLR3F	100	88.316	Colobus_angolensis_palliatus
ENSDARG00000012572	polr3f	100	87.975	ENSCGRG00001002032	Polr3f	100	87.975	Cricetulus_griseus_chok1gshd
ENSDARG00000012572	polr3f	100	87.975	ENSCGRG00000010852	Polr3f	100	87.975	Cricetulus_griseus_crigri
ENSDARG00000012572	polr3f	100	89.873	ENSCSEG00000001247	polr3f	100	89.873	Cynoglossus_semilaevis
ENSDARG00000012572	polr3f	100	89.557	ENSCVAG00000007611	polr3f	100	89.557	Cyprinodon_variegatus
ENSDARG00000012572	polr3f	100	86.076	ENSDNOG00000010719	POLR3F	100	86.076	Dasypus_novemcinctus
ENSDARG00000012572	polr3f	100	88.291	ENSDORG00000016352	Polr3f	100	88.291	Dipodomys_ordii
ENSDARG00000012572	polr3f	92	51.724	FBgn0038951	CG5380	96	51.724	Drosophila_melanogaster
ENSDARG00000012572	polr3f	89	53.047	ENSETEG00000015485	-	99	53.047	Echinops_telfairi
ENSDARG00000012572	polr3f	100	77.070	ENSEBUG00000006783	polr3f	100	77.070	Eptatretus_burgeri
ENSDARG00000012572	polr3f	100	88.608	ENSEASG00005002022	POLR3F	100	88.608	Equus_asinus_asinus
ENSDARG00000012572	polr3f	100	88.608	ENSECAG00000009920	POLR3F	100	88.608	Equus_caballus
ENSDARG00000012572	polr3f	80	92.000	ENSEEUG00000000184	POLR3F	80	92.000	Erinaceus_europaeus
ENSDARG00000012572	polr3f	100	94.904	ENSELUG00000001558	polr3f	100	94.904	Esox_lucius
ENSDARG00000012572	polr3f	100	88.291	ENSFCAG00000013828	POLR3F	100	88.291	Felis_catus
ENSDARG00000012572	polr3f	88	91.636	ENSFALG00000007623	POLR3F	100	91.636	Ficedula_albicollis
ENSDARG00000012572	polr3f	100	87.975	ENSFDAG00000002528	POLR3F	100	87.975	Fukomys_damarensis
ENSDARG00000012572	polr3f	100	88.924	ENSFHEG00000006450	polr3f	100	88.924	Fundulus_heteroclitus
ENSDARG00000012572	polr3f	100	89.809	ENSGALG00000008749	POLR3F	100	89.809	Gallus_gallus
ENSDARG00000012572	polr3f	100	91.139	ENSGAFG00000003698	polr3f	100	91.139	Gambusia_affinis
ENSDARG00000012572	polr3f	100	88.217	ENSGAGG00000006151	POLR3F	100	88.217	Gopherus_agassizii
ENSDARG00000012572	polr3f	100	88.608	ENSGGOG00000011543	POLR3F	100	88.608	Gorilla_gorilla
ENSDARG00000012572	polr3f	100	92.089	ENSHBUG00000013806	polr3f	100	92.089	Haplochromis_burtoni
ENSDARG00000012572	polr3f	100	87.975	ENSHGLG00000011867	POLR3F	100	87.975	Heterocephalus_glaber_female
ENSDARG00000012572	polr3f	100	87.975	ENSHGLG00100012577	POLR3F	100	87.975	Heterocephalus_glaber_male
ENSDARG00000012572	polr3f	100	81.013	ENSHCOG00000011751	polr3f	100	81.013	Hippocampus_comes
ENSDARG00000012572	polr3f	100	95.541	ENSIPUG00000013347	polr3f	100	95.541	Ictalurus_punctatus
ENSDARG00000012572	polr3f	100	88.291	ENSSTOG00000013588	POLR3F	100	88.291	Ictidomys_tridecemlineatus
ENSDARG00000012572	polr3f	100	87.658	ENSJJAG00000017513	Polr3f	100	87.658	Jaculus_jaculus
ENSDARG00000012572	polr3f	88	84.727	ENSKMAG00000016495	polr3f	100	84.727	Kryptolebias_marmoratus
ENSDARG00000012572	polr3f	74	95.690	ENSLBEG00000011998	polr3f	100	95.690	Labrus_bergylta
ENSDARG00000012572	polr3f	100	89.809	ENSLACG00000009371	POLR3F	100	89.809	Latimeria_chalumnae
ENSDARG00000012572	polr3f	100	93.631	ENSLOCG00000015701	polr3f	100	93.631	Lepisosteus_oculatus
ENSDARG00000012572	polr3f	100	87.975	ENSLAFG00000004929	POLR3F	100	87.975	Loxodonta_africana
ENSDARG00000012572	polr3f	100	88.291	ENSMFAG00000002227	POLR3F	100	88.291	Macaca_fascicularis
ENSDARG00000012572	polr3f	88	90.545	ENSMMUG00000004143	POLR3F	100	90.545	Macaca_mulatta
ENSDARG00000012572	polr3f	100	88.291	ENSMNEG00000033404	POLR3F	100	88.291	Macaca_nemestrina
ENSDARG00000012572	polr3f	100	88.291	ENSMLEG00000021905	POLR3F	100	88.291	Mandrillus_leucophaeus
ENSDARG00000012572	polr3f	100	91.772	ENSMAMG00000017975	polr3f	100	91.772	Mastacembelus_armatus
ENSDARG00000012572	polr3f	100	91.456	ENSMZEG00005015134	polr3f	100	91.456	Maylandia_zebra
ENSDARG00000012572	polr3f	100	90.446	ENSMGAG00000006691	POLR3F	100	90.446	Meleagris_gallopavo
ENSDARG00000012572	polr3f	100	87.658	ENSMAUG00000020176	Polr3f	100	87.658	Mesocricetus_auratus
ENSDARG00000012572	polr3f	100	88.291	ENSMICG00000044519	POLR3F	100	88.291	Microcebus_murinus
ENSDARG00000012572	polr3f	100	87.975	ENSMOCG00000018352	Polr3f	100	87.975	Microtus_ochrogaster
ENSDARG00000012572	polr3f	94	92.256	ENSMMOG00000018477	polr3f	100	92.256	Mola_mola
ENSDARG00000012572	polr3f	100	87.975	ENSMODG00000005624	POLR3F	100	87.975	Monodelphis_domestica
ENSDARG00000012572	polr3f	100	91.772	ENSMALG00000006685	polr3f	100	91.772	Monopterus_albus
ENSDARG00000012572	polr3f	100	87.342	MGP_CAROLIEiJ_G0024385	Polr3f	100	87.342	Mus_caroli
ENSDARG00000012572	polr3f	100	87.342	ENSMUSG00000027427	Polr3f	100	87.342	Mus_musculus
ENSDARG00000012572	polr3f	100	87.342	MGP_PahariEiJ_G0025829	Polr3f	100	87.342	Mus_pahari
ENSDARG00000012572	polr3f	100	87.342	MGP_SPRETEiJ_G0025304	Polr3f	100	87.342	Mus_spretus
ENSDARG00000012572	polr3f	99	67.391	ENSMPUG00000001252	-	99	67.391	Mustela_putorius_furo
ENSDARG00000012572	polr3f	100	88.291	ENSMLUG00000014844	POLR3F	100	88.291	Myotis_lucifugus
ENSDARG00000012572	polr3f	100	87.025	ENSNGAG00000010898	Polr3f	100	87.025	Nannospalax_galili
ENSDARG00000012572	polr3f	100	92.405	ENSNBRG00000020796	polr3f	100	92.405	Neolamprologus_brichardi
ENSDARG00000012572	polr3f	100	88.608	ENSNLEG00000009778	POLR3F	100	88.608	Nomascus_leucogenys
ENSDARG00000012572	polr3f	94	83.390	ENSMEUG00000010320	POLR3F	100	83.390	Notamacropus_eugenii
ENSDARG00000012572	polr3f	100	87.025	ENSOPRG00000003385	POLR3F	100	87.025	Ochotona_princeps
ENSDARG00000012572	polr3f	100	88.608	ENSODEG00000011521	POLR3F	100	88.608	Octodon_degus
ENSDARG00000012572	polr3f	100	90.506	ENSONIG00000006858	polr3f	100	90.506	Oreochromis_niloticus
ENSDARG00000012572	polr3f	100	87.975	ENSOANG00000001253	POLR3F	100	87.975	Ornithorhynchus_anatinus
ENSDARG00000012572	polr3f	100	88.608	ENSOCUG00000015067	POLR3F	100	88.608	Oryctolagus_cuniculus
ENSDARG00000012572	polr3f	100	87.342	ENSORLG00000022412	polr3f	100	87.342	Oryzias_latipes
ENSDARG00000012572	polr3f	100	87.342	ENSORLG00020021944	polr3f	100	87.342	Oryzias_latipes_hni
ENSDARG00000012572	polr3f	100	87.342	ENSOGAG00000002916	POLR3F	100	87.342	Otolemur_garnettii
ENSDARG00000012572	polr3f	100	53.797	ENSOARG00000008647	-	100	53.797	Ovis_aries
ENSDARG00000012572	polr3f	100	87.975	ENSOARG00000000315	-	100	87.975	Ovis_aries
ENSDARG00000012572	polr3f	100	88.608	ENSPPAG00000036681	POLR3F	100	88.608	Pan_paniscus
ENSDARG00000012572	polr3f	100	88.291	ENSPPRG00000024604	POLR3F	100	88.291	Panthera_pardus
ENSDARG00000012572	polr3f	100	88.291	ENSPTIG00000020292	POLR3F	100	88.291	Panthera_tigris_altaica
ENSDARG00000012572	polr3f	100	88.608	ENSPTRG00000013287	POLR3F	100	88.608	Pan_troglodytes
ENSDARG00000012572	polr3f	100	88.291	ENSPANG00000025015	POLR3F	100	88.291	Papio_anubis
ENSDARG00000012572	polr3f	100	93.949	ENSPKIG00000004427	polr3f	100	93.949	Paramormyrops_kingsleyae
ENSDARG00000012572	polr3f	88	91.273	ENSPSIG00000016613	POLR3F	100	91.273	Pelodiscus_sinensis
ENSDARG00000012572	polr3f	100	57.053	ENSPMGG00000018350	polr3f	100	60.127	Periophthalmus_magnuspinnatus
ENSDARG00000012572	polr3f	100	88.291	ENSPEMG00000006966	Polr3f	100	88.291	Peromyscus_maniculatus_bairdii
ENSDARG00000012572	polr3f	100	80.255	ENSPMAG00000005530	polr3f	100	80.255	Petromyzon_marinus
ENSDARG00000012572	polr3f	100	87.975	ENSPCIG00000000908	POLR3F	85	87.975	Phascolarctos_cinereus
ENSDARG00000012572	polr3f	100	90.506	ENSPFOG00000018334	polr3f	100	90.506	Poecilia_formosa
ENSDARG00000012572	polr3f	100	90.506	ENSPLAG00000021803	polr3f	100	90.506	Poecilia_latipinna
ENSDARG00000012572	polr3f	100	90.506	ENSPMEG00000013150	polr3f	100	90.506	Poecilia_mexicana
ENSDARG00000012572	polr3f	100	90.506	ENSPREG00000005278	polr3f	100	90.506	Poecilia_reticulata
ENSDARG00000012572	polr3f	100	88.608	ENSPPYG00000010737	POLR3F	100	88.608	Pongo_abelii
ENSDARG00000012572	polr3f	66	91.216	ENSPCAG00000004893	POLR3F	71	91.216	Procavia_capensis
ENSDARG00000012572	polr3f	100	88.291	ENSPCOG00000004543	POLR3F	100	88.291	Propithecus_coquereli
ENSDARG00000012572	polr3f	100	87.975	ENSPVAG00000000403	POLR3F	100	87.975	Pteropus_vampyrus
ENSDARG00000012572	polr3f	100	92.089	ENSPNYG00000016276	polr3f	100	92.089	Pundamilia_nyererei
ENSDARG00000012572	polr3f	100	97.134	ENSPNAG00000005164	polr3f	100	97.134	Pygocentrus_nattereri
ENSDARG00000012572	polr3f	100	87.658	ENSRNOG00000007548	Polr3f	85	87.658	Rattus_norvegicus
ENSDARG00000012572	polr3f	100	88.291	ENSRBIG00000021268	POLR3F	100	88.291	Rhinopithecus_bieti
ENSDARG00000012572	polr3f	100	88.291	ENSRROG00000039911	POLR3F	100	88.291	Rhinopithecus_roxellana
ENSDARG00000012572	polr3f	100	88.291	ENSSBOG00000018207	POLR3F	100	88.291	Saimiri_boliviensis_boliviensis
ENSDARG00000012572	polr3f	100	71.340	ENSSHAG00000018160	POLR3F	100	71.118	Sarcophilus_harrisii
ENSDARG00000012572	polr3f	100	95.541	ENSSFOG00015022433	polr3f	100	95.541	Scleropages_formosus
ENSDARG00000012572	polr3f	100	89.873	ENSSMAG00000021029	polr3f	100	89.873	Scophthalmus_maximus
ENSDARG00000012572	polr3f	100	80.380	ENSSDUG00000022435	polr3f	100	80.380	Seriola_dumerili
ENSDARG00000012572	polr3f	100	91.456	ENSSLDG00000012761	polr3f	100	91.456	Seriola_lalandi_dorsalis
ENSDARG00000012572	polr3f	99	80.192	ENSSARG00000006039	POLR3F	99	80.192	Sorex_araneus
ENSDARG00000012572	polr3f	100	87.580	ENSSPUG00000001873	POLR3F	100	87.580	Sphenodon_punctatus
ENSDARG00000012572	polr3f	100	83.228	ENSSPAG00000002092	polr3f	100	83.228	Stegastes_partitus
ENSDARG00000012572	polr3f	100	87.975	ENSSSCG00000007095	POLR3F	100	92.672	Sus_scrofa
ENSDARG00000012572	polr3f	100	90.127	ENSTGUG00000005839	POLR3F	100	90.127	Taeniopygia_guttata
ENSDARG00000012572	polr3f	100	88.608	ENSTRUG00000012101	polr3f	100	88.608	Takifugu_rubripes
ENSDARG00000012572	polr3f	100	87.658	ENSTNIG00000006456	polr3f	100	87.658	Tetraodon_nigroviridis
ENSDARG00000012572	polr3f	100	72.468	ENSTBEG00000007921	POLR3F	100	72.468	Tupaia_belangeri
ENSDARG00000012572	polr3f	100	87.975	ENSTTRG00000002580	POLR3F	100	87.975	Tursiops_truncatus
ENSDARG00000012572	polr3f	53	90.361	ENSUAMG00000024166	POLR3F	100	90.361	Ursus_americanus
ENSDARG00000012572	polr3f	100	87.975	ENSUMAG00000024944	POLR3F	100	87.975	Ursus_maritimus
ENSDARG00000012572	polr3f	100	87.975	ENSVPAG00000009063	POLR3F	100	87.975	Vicugna_pacos
ENSDARG00000012572	polr3f	100	87.975	ENSVVUG00000012925	POLR3F	100	87.975	Vulpes_vulpes
ENSDARG00000012572	polr3f	100	87.580	ENSXETG00000024898	polr3f	100	87.580	Xenopus_tropicalis
ENSDARG00000012572	polr3f	88	92.000	ENSXCOG00000010301	polr3f	100	92.000	Xiphophorus_couchianus
ENSDARG00000012572	polr3f	100	90.190	ENSXMAG00000004604	polr3f	100	90.190	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001056	RNA polymerase III activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005666	RNA polymerase III complex	21873635.	IBA	Component
GO:0005666	RNA polymerase III complex	-	IEA	Component
GO:0006383	transcription by RNA polymerase III	-	IEA	Process
GO:0060041	retina development in camera-type eye	15716491.	IMP	Process