EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000012642 (Gene tree)
Gene ID: 793549
Gene Symbol: si:ch211-266d19.4
Alias: wu:fb98d12
Full Name: si:ch211-266d19.4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 22738 bases
Position: chr24:2318351-2341088
Accession: ZDB-GENE-091204-74
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	1	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	2	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	3	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	4	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	5	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	6	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	7	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	8	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	9	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	10	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	11	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	12	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	13	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	14	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	15	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	16	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	17	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	18	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	19	20
ENSDARP00000115548	zf-C2H2	PF00096.26	2.7e-107	20	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	1	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	2	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	3	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	4	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	5	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	6	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	7	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	8	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	9	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	10	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	11	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	12	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	13	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	14	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	15	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	16	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	17	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	18	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	19	20
ENSDARP00000152230	zf-C2H2	PF00096.26	7.1e-107	20	20
ENSDARP00000115548	zf-met	PF12874.7	4e-21	1	4
ENSDARP00000115548	zf-met	PF12874.7	4e-21	2	4
ENSDARP00000115548	zf-met	PF12874.7	4e-21	3	4
ENSDARP00000115548	zf-met	PF12874.7	4e-21	4	4
ENSDARP00000152230	zf-met	PF12874.7	8.8e-21	1	4
ENSDARP00000152230	zf-met	PF12874.7	8.8e-21	2	4
ENSDARP00000152230	zf-met	PF12874.7	8.8e-21	3	4
ENSDARP00000152230	zf-met	PF12874.7	8.8e-21	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000132530	-	4120	XM_009297216	ENSDARP00000115548	1055 (aa)	XP_009295491	E9QG35
ENSDART00000186328	-	3390	XM_001333296	ENSDARP00000152230	1089 (aa)	XP_001333332	A0A2R8QGS5

Gene Model

Click here to download ENSDARG00000012642's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000012642's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000012642	si:ch211-266d19.4	95	34.073	ENSDARG00000026972	si:ch211-119o8.6	77	33.673
ENSDARG00000012642	si:ch211-266d19.4	93	46.000	ENSDARG00000096614	si:dkey-182i3.10	74	41.964
ENSDARG00000012642	si:ch211-266d19.4	96	36.364	ENSDARG00000057238	si:dkey-30k6.5	99	36.364
ENSDARG00000012642	si:ch211-266d19.4	93	31.557	ENSDARG00000058562	znf991	99	31.485
ENSDARG00000012642	si:ch211-266d19.4	95	35.703	ENSDARG00000071714	znf983	98	36.129
ENSDARG00000012642	si:ch211-266d19.4	96	34.091	ENSDARG00000071589	si:dkey-253d23.2	96	32.419
ENSDARG00000012642	si:ch211-266d19.4	90	50.847	ENSDARG00000111465	znf1104	94	41.975
ENSDARG00000012642	si:ch211-266d19.4	96	36.128	ENSDARG00000098898	si:ch211-255f4.2	100	36.128
ENSDARG00000012642	si:ch211-266d19.4	97	41.958	ENSDARG00000095890	znf236	80	41.958
ENSDARG00000012642	si:ch211-266d19.4	93	40.268	ENSDARG00000091679	FO704858.1	99	40.268
ENSDARG00000012642	si:ch211-266d19.4	93	35.667	ENSDARG00000101562	znf1014	94	37.470
ENSDARG00000012642	si:ch211-266d19.4	92	46.809	ENSDARG00000113626	znf976	99	42.500
ENSDARG00000012642	si:ch211-266d19.4	94	31.601	ENSDARG00000006288	prdm5	84	31.601
ENSDARG00000012642	si:ch211-266d19.4	93	47.826	ENSDARG00000096575	si:dkey-182i3.9	98	39.437
ENSDARG00000012642	si:ch211-266d19.4	93	44.144	ENSDARG00000087290	si:ch211-202h22.10	99	44.144
ENSDARG00000012642	si:ch211-266d19.4	95	44.231	ENSDARG00000075834	si:dkey-182i3.8	97	44.231
ENSDARG00000012642	si:ch211-266d19.4	95	40.404	ENSDARG00000061424	znf646	98	40.404
ENSDARG00000012642	si:ch211-266d19.4	93	47.500	ENSDARG00000014775	zgc:113220	95	47.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000012642	si:ch211-266d19.4	96	39.109	ENSAPEG00000019755	-	69	41.333	Amphiprion_percula
ENSDARG00000012642	si:ch211-266d19.4	80	34.028	WBGene00021374	Y37E11B.1	100	33.858	Caenorhabditis_elegans
ENSDARG00000012642	si:ch211-266d19.4	97	35.648	ENSCSAVG00000009574	-	99	35.484	Ciona_savignyi
ENSDARG00000012642	si:ch211-266d19.4	100	33.014	ENSCSEG00000005491	-	97	33.014	Cynoglossus_semilaevis
ENSDARG00000012642	si:ch211-266d19.4	92	38.333	ENSCVAG00000016098	-	99	38.333	Cyprinodon_variegatus
ENSDARG00000012642	si:ch211-266d19.4	97	40.323	ENSCVAG00000002295	-	87	40.323	Cyprinodon_variegatus
ENSDARG00000012642	si:ch211-266d19.4	97	34.395	ENSEBUG00000004841	-	87	34.478	Eptatretus_burgeri
ENSDARG00000012642	si:ch211-266d19.4	93	37.204	ENSEBUG00000000735	-	100	37.204	Eptatretus_burgeri
ENSDARG00000012642	si:ch211-266d19.4	95	37.179	ENSEBUG00000008392	-	85	34.940	Eptatretus_burgeri
ENSDARG00000012642	si:ch211-266d19.4	98	34.671	ENSEBUG00000015522	-	75	33.748	Eptatretus_burgeri
ENSDARG00000012642	si:ch211-266d19.4	96	41.237	ENSELUG00000010454	-	66	46.250	Esox_lucius
ENSDARG00000012642	si:ch211-266d19.4	94	39.167	ENSFHEG00000003596	-	82	39.167	Fundulus_heteroclitus
ENSDARG00000012642	si:ch211-266d19.4	94	43.333	ENSFHEG00000012990	-	97	30.660	Fundulus_heteroclitus
ENSDARG00000012642	si:ch211-266d19.4	96	39.683	ENSFHEG00000013644	-	80	35.476	Fundulus_heteroclitus
ENSDARG00000012642	si:ch211-266d19.4	93	38.525	ENSHCOG00000008181	-	81	38.525	Hippocampus_comes
ENSDARG00000012642	si:ch211-266d19.4	93	32.632	ENSHCOG00000014887	-	82	32.632	Hippocampus_comes
ENSDARG00000012642	si:ch211-266d19.4	95	41.975	ENSHCOG00000014881	-	75	41.975	Hippocampus_comes
ENSDARG00000012642	si:ch211-266d19.4	59	35.802	ENSMMOG00000001961	-	100	35.802	Mola_mola
ENSDARG00000012642	si:ch211-266d19.4	96	37.755	ENSONIG00000016416	-	98	37.255	Oreochromis_niloticus
ENSDARG00000012642	si:ch211-266d19.4	96	36.634	ENSONIG00000007812	-	99	38.889	Oreochromis_niloticus
ENSDARG00000012642	si:ch211-266d19.4	95	35.294	ENSPMGG00000013602	-	97	35.294	Periophthalmus_magnuspinnatus
ENSDARG00000012642	si:ch211-266d19.4	94	47.917	ENSPMGG00000022524	-	97	40.000	Periophthalmus_magnuspinnatus
ENSDARG00000012642	si:ch211-266d19.4	93	32.738	ENSPMGG00000010664	-	95	33.333	Periophthalmus_magnuspinnatus
ENSDARG00000012642	si:ch211-266d19.4	97	37.173	ENSPMGG00000000458	-	79	37.719	Periophthalmus_magnuspinnatus
ENSDARG00000012642	si:ch211-266d19.4	93	42.991	ENSPMGG00000010563	-	82	31.605	Periophthalmus_magnuspinnatus
ENSDARG00000012642	si:ch211-266d19.4	93	37.431	ENSPFOG00000002879	-	99	42.446	Poecilia_formosa
ENSDARG00000012642	si:ch211-266d19.4	97	36.905	ENSPLAG00000006174	-	76	35.885	Poecilia_latipinna
ENSDARG00000012642	si:ch211-266d19.4	90	39.175	ENSPMEG00000022676	-	100	39.175	Poecilia_mexicana
ENSDARG00000012642	si:ch211-266d19.4	92	39.437	ENSPMEG00000019229	-	67	39.437	Poecilia_mexicana
ENSDARG00000012642	si:ch211-266d19.4	92	38.732	ENSPREG00000007146	-	67	38.732	Poecilia_reticulata
ENSDARG00000012642	si:ch211-266d19.4	92	33.582	ENSPREG00000016204	-	73	31.501	Poecilia_reticulata
ENSDARG00000012642	si:ch211-266d19.4	96	41.758	ENSSDUG00000000946	-	99	36.648	Seriola_dumerili

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function