EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000012674 (Gene tree)
Gene ID: 445101
Gene Symbol: rpusd4
Alias: si:ch211-14i3.3|zgc:92006
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 117176 bases
Position: chr11:17964689-18081864
Accession: ZDB-GENE-040801-238
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000011603	PseudoU_synth_2	PF00849.22	3.1e-35	1	1
ENSDARP00000144970	PseudoU_synth_2	PF00849.22	3.1e-35	1	1
ENSDARP00000152597	PseudoU_synth_2	PF00849.22	3.1e-35	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000168082	-	706	-	-	- (aa)	-	-
ENSDART00000020283	-	1748	-	ENSDARP00000011603	358 (aa)	-	Q6DBR0
ENSDART00000179986	-	1077	-	ENSDARP00000152597	358 (aa)	-	Q6DBR0
ENSDART00000188329	-	1383	-	ENSDARP00000144970	358 (aa)	-	Q6DBR0

Gene Model

Click here to download ENSDARG00000012674's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000012674's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000012674	rpusd4	90	49.068	ENSG00000165526	RPUSD4	90	47.965	Homo_sapiens
ENSDARG00000012674	rpusd4	95	55.556	ENSAPOG00000011024	rpusd4	88	55.556	Acanthochromis_polyacanthus
ENSDARG00000012674	rpusd4	97	49.284	ENSAMEG00000000127	-	92	49.284	Ailuropoda_melanoleuca
ENSDARG00000012674	rpusd4	73	51.020	ENSAMEG00000005953	-	94	51.020	Ailuropoda_melanoleuca
ENSDARG00000012674	rpusd4	90	60.062	ENSACIG00000003533	rpusd4	89	61.513	Amphilophus_citrinellus
ENSDARG00000012674	rpusd4	95	55.429	ENSAOCG00000015409	rpusd4	86	55.429	Amphiprion_ocellaris
ENSDARG00000012674	rpusd4	95	56.000	ENSAPEG00000018935	rpusd4	86	56.000	Amphiprion_percula
ENSDARG00000012674	rpusd4	93	59.184	ENSATEG00000008059	rpusd4	85	59.184	Anabas_testudineus
ENSDARG00000012674	rpusd4	77	51.439	ENSAPLG00000013250	RPUSD4	99	50.340	Anas_platyrhynchos
ENSDARG00000012674	rpusd4	91	49.080	ENSACAG00000000189	RPUSD4	89	49.080	Anolis_carolinensis
ENSDARG00000012674	rpusd4	96	46.221	ENSANAG00000024050	RPUSD4	92	46.221	Aotus_nancymaae
ENSDARG00000012674	rpusd4	90	59.877	ENSACLG00000020996	rpusd4	83	59.327	Astatotilapia_calliptera
ENSDARG00000012674	rpusd4	98	68.362	ENSAMXG00000031479	rpusd4	97	69.096	Astyanax_mexicanus
ENSDARG00000012674	rpusd4	91	49.538	ENSBTAG00000020900	RPUSD4	85	49.231	Bos_taurus
ENSDARG00000012674	rpusd4	96	46.512	ENSCJAG00000042850	RPUSD4	86	46.512	Callithrix_jacchus
ENSDARG00000012674	rpusd4	97	48.424	ENSCAFG00000010488	RPUSD4	92	48.424	Canis_familiaris
ENSDARG00000012674	rpusd4	97	48.424	ENSCAFG00020010621	RPUSD4	92	48.424	Canis_lupus_dingo
ENSDARG00000012674	rpusd4	91	49.846	ENSCHIG00000009975	RPUSD4	85	49.538	Capra_hircus
ENSDARG00000012674	rpusd4	91	49.538	ENSTSYG00000008456	RPUSD4	86	49.231	Carlito_syrichta
ENSDARG00000012674	rpusd4	68	51.012	ENSCAPG00000006040	RPUSD4	94	51.012	Cavia_aperea
ENSDARG00000012674	rpusd4	91	52.454	ENSCPOG00000014971	RPUSD4	80	53.770	Cavia_porcellus
ENSDARG00000012674	rpusd4	91	48.308	ENSCCAG00000027838	RPUSD4	87	48.308	Cebus_capucinus
ENSDARG00000012674	rpusd4	96	47.384	ENSCATG00000041570	RPUSD4	90	47.384	Cercocebus_atys
ENSDARG00000012674	rpusd4	97	48.571	ENSCLAG00000016553	RPUSD4	92	48.571	Chinchilla_lanigera
ENSDARG00000012674	rpusd4	96	47.674	ENSCSAG00000002274	RPUSD4	90	47.674	Chlorocebus_sabaeus
ENSDARG00000012674	rpusd4	76	51.095	ENSCHOG00000010249	RPUSD4	95	51.095	Choloepus_hoffmanni
ENSDARG00000012674	rpusd4	80	53.147	ENSCPBG00000011175	RPUSD4	98	53.147	Chrysemys_picta_bellii
ENSDARG00000012674	rpusd4	89	35.952	ENSCSAVG00000000872	-	60	36.656	Ciona_savignyi
ENSDARG00000012674	rpusd4	95	46.921	ENSCANG00000039684	RPUSD4	90	46.921	Colobus_angolensis_palliatus
ENSDARG00000012674	rpusd4	91	50.613	ENSCGRG00001024141	Rpusd4	85	50.613	Cricetulus_griseus_chok1gshd
ENSDARG00000012674	rpusd4	91	50.613	ENSCGRG00000014415	Rpusd4	85	50.613	Cricetulus_griseus_crigri
ENSDARG00000012674	rpusd4	59	42.723	ENSCSEG00000006462	-	88	42.723	Cynoglossus_semilaevis
ENSDARG00000012674	rpusd4	96	56.977	ENSCVAG00000000392	rpusd4	97	56.686	Cyprinodon_variegatus
ENSDARG00000012674	rpusd4	90	58.642	ENSCVAG00000008761	rpusd4	90	55.114	Cyprinodon_variegatus
ENSDARG00000012674	rpusd4	98	47.740	ENSDNOG00000020026	RPUSD4	91	47.740	Dasypus_novemcinctus
ENSDARG00000012674	rpusd4	98	46.875	ENSDORG00000016717	Rpusd4	93	46.875	Dipodomys_ordii
ENSDARG00000012674	rpusd4	91	52.308	ENSETEG00000013953	RPUSD4	86	52.000	Echinops_telfairi
ENSDARG00000012674	rpusd4	91	51.077	ENSEASG00005022982	RPUSD4	85	51.077	Equus_asinus_asinus
ENSDARG00000012674	rpusd4	91	51.385	ENSECAG00000000557	RPUSD4	85	51.385	Equus_caballus
ENSDARG00000012674	rpusd4	71	53.333	ENSEEUG00000014036	RPUSD4	62	53.333	Erinaceus_europaeus
ENSDARG00000012674	rpusd4	91	59.281	ENSELUG00000008075	rpusd4	80	61.639	Esox_lucius
ENSDARG00000012674	rpusd4	91	49.846	ENSFCAG00000029789	RPUSD4	85	49.846	Felis_catus
ENSDARG00000012674	rpusd4	92	49.091	ENSFALG00000005171	RPUSD4	97	49.091	Ficedula_albicollis
ENSDARG00000012674	rpusd4	91	49.846	ENSFDAG00000014307	RPUSD4	86	49.846	Fukomys_damarensis
ENSDARG00000012674	rpusd4	97	58.453	ENSFHEG00000004329	rpusd4	90	58.453	Fundulus_heteroclitus
ENSDARG00000012674	rpusd4	90	55.901	ENSGMOG00000017726	rpusd4	96	55.901	Gadus_morhua
ENSDARG00000012674	rpusd4	79	53.169	ENSGALG00000024326	RPUSD4	94	49.112	Gallus_gallus
ENSDARG00000012674	rpusd4	90	58.232	ENSGAFG00000021559	rpusd4	84	58.232	Gambusia_affinis
ENSDARG00000012674	rpusd4	90	57.716	ENSGACG00000001657	rpusd4	97	60.932	Gasterosteus_aculeatus
ENSDARG00000012674	rpusd4	96	48.696	ENSGAGG00000000132	RPUSD4	94	48.406	Gopherus_agassizii
ENSDARG00000012674	rpusd4	90	49.068	ENSGGOG00000016494	RPUSD4	90	47.965	Gorilla_gorilla
ENSDARG00000012674	rpusd4	90	59.877	ENSHBUG00000022838	rpusd4	83	59.327	Haplochromis_burtoni
ENSDARG00000012674	rpusd4	90	50.621	ENSHGLG00000002285	RPUSD4	85	50.621	Heterocephalus_glaber_female
ENSDARG00000012674	rpusd4	90	50.621	ENSHGLG00100006385	RPUSD4	85	50.621	Heterocephalus_glaber_male
ENSDARG00000012674	rpusd4	91	57.187	ENSHCOG00000006612	rpusd4	83	57.187	Hippocampus_comes
ENSDARG00000012674	rpusd4	97	66.859	ENSIPUG00000023879	rusd4	90	66.859	Ictalurus_punctatus
ENSDARG00000012674	rpusd4	97	46.991	ENSSTOG00000025280	RPUSD4	95	46.991	Ictidomys_tridecemlineatus
ENSDARG00000012674	rpusd4	90	51.840	ENSJJAG00000018673	Rpusd4	82	52.787	Jaculus_jaculus
ENSDARG00000012674	rpusd4	98	55.211	ENSKMAG00000021805	rpusd4	92	55.211	Kryptolebias_marmoratus
ENSDARG00000012674	rpusd4	98	57.790	ENSLBEG00000020394	rpusd4	98	57.790	Labrus_bergylta
ENSDARG00000012674	rpusd4	90	51.393	ENSLACG00000011028	RPUSD4	75	53.512	Latimeria_chalumnae
ENSDARG00000012674	rpusd4	97	44.663	ENSLOCG00000003124	rpusd4	95	44.663	Lepisosteus_oculatus
ENSDARG00000012674	rpusd4	96	49.128	ENSLAFG00000005211	RPUSD4	100	44.027	Loxodonta_africana
ENSDARG00000012674	rpusd4	96	47.674	ENSMFAG00000039513	RPUSD4	90	47.674	Macaca_fascicularis
ENSDARG00000012674	rpusd4	96	47.384	ENSMMUG00000007933	RPUSD4	90	47.384	Macaca_mulatta
ENSDARG00000012674	rpusd4	96	47.674	ENSMNEG00000027414	RPUSD4	90	47.674	Macaca_nemestrina
ENSDARG00000012674	rpusd4	96	47.384	ENSMLEG00000042461	RPUSD4	90	47.384	Mandrillus_leucophaeus
ENSDARG00000012674	rpusd4	90	58.104	ENSMAMG00000023839	rpusd4	84	58.104	Mastacembelus_armatus
ENSDARG00000012674	rpusd4	90	59.877	ENSMZEG00005011999	rpusd4	83	59.327	Maylandia_zebra
ENSDARG00000012674	rpusd4	78	51.418	ENSMGAG00000000840	RPUSD4	93	50.164	Meleagris_gallopavo
ENSDARG00000012674	rpusd4	96	48.555	ENSMAUG00000010280	Rpusd4	91	48.555	Mesocricetus_auratus
ENSDARG00000012674	rpusd4	91	49.538	ENSMICG00000015979	RPUSD4	91	50.329	Microcebus_murinus
ENSDARG00000012674	rpusd4	91	48.000	ENSMOCG00000000661	Rpusd4	85	48.000	Microtus_ochrogaster
ENSDARG00000012674	rpusd4	89	61.442	ENSMMOG00000021731	rpusd4	91	62.541	Mola_mola
ENSDARG00000012674	rpusd4	92	49.848	ENSMODG00000004521	RPUSD4	84	49.848	Monodelphis_domestica
ENSDARG00000012674	rpusd4	84	62.500	ENSMALG00000005839	rpusd4	92	62.500	Monopterus_albus
ENSDARG00000012674	rpusd4	91	51.227	MGP_CAROLIEiJ_G0031954	Rpusd4	85	51.227	Mus_caroli
ENSDARG00000012674	rpusd4	91	50.613	ENSMUSG00000032044	Rpusd4	85	50.613	Mus_musculus
ENSDARG00000012674	rpusd4	91	50.613	MGP_PahariEiJ_G0014819	Rpusd4	85	50.613	Mus_pahari
ENSDARG00000012674	rpusd4	91	50.613	MGP_SPRETEiJ_G0033078	Rpusd4	85	50.613	Mus_spretus
ENSDARG00000012674	rpusd4	97	49.284	ENSMPUG00000006608	RPUSD4	92	49.284	Mustela_putorius_furo
ENSDARG00000012674	rpusd4	72	51.751	ENSMLUG00000029348	-	100	51.751	Myotis_lucifugus
ENSDARG00000012674	rpusd4	93	50.000	ENSMLUG00000017328	-	88	50.000	Myotis_lucifugus
ENSDARG00000012674	rpusd4	91	50.769	ENSNGAG00000020847	Rpusd4	85	50.769	Nannospalax_galili
ENSDARG00000012674	rpusd4	96	58.671	ENSNBRG00000005207	rpusd4	99	58.166	Neolamprologus_brichardi
ENSDARG00000012674	rpusd4	96	48.256	ENSNLEG00000007465	RPUSD4	90	48.256	Nomascus_leucogenys
ENSDARG00000012674	rpusd4	91	50.462	ENSMEUG00000004370	RPUSD4	87	50.462	Notamacropus_eugenii
ENSDARG00000012674	rpusd4	97	48.857	ENSODEG00000004577	RPUSD4	85	51.227	Octodon_degus
ENSDARG00000012674	rpusd4	95	59.064	ENSONIG00000018879	rpusd4	91	58.551	Oreochromis_niloticus
ENSDARG00000012674	rpusd4	82	49.158	ENSOANG00000007247	RPUSD4	96	49.505	Ornithorhynchus_anatinus
ENSDARG00000012674	rpusd4	97	48.000	ENSOCUG00000017039	RPUSD4	92	47.714	Oryctolagus_cuniculus
ENSDARG00000012674	rpusd4	97	52.925	ENSORLG00000002750	rpusd4	98	52.778	Oryzias_latipes
ENSDARG00000012674	rpusd4	94	53.623	ENSORLG00020002044	rpusd4	86	53.623	Oryzias_latipes_hni
ENSDARG00000012674	rpusd4	97	52.646	ENSORLG00015020034	rpusd4	89	52.646	Oryzias_latipes_hsok
ENSDARG00000012674	rpusd4	94	55.460	ENSOMEG00000004861	rpusd4	86	55.460	Oryzias_melastigma
ENSDARG00000012674	rpusd4	89	50.784	ENSOGAG00000008922	RPUSD4	89	48.974	Otolemur_garnettii
ENSDARG00000012674	rpusd4	91	49.846	ENSOARG00000012238	RPUSD4	85	49.538	Ovis_aries
ENSDARG00000012674	rpusd4	90	49.068	ENSPPAG00000042883	RPUSD4	84	47.965	Pan_paniscus
ENSDARG00000012674	rpusd4	91	49.538	ENSPPRG00000003081	RPUSD4	85	49.538	Panthera_pardus
ENSDARG00000012674	rpusd4	91	49.538	ENSPTIG00000012059	RPUSD4	87	50.654	Panthera_tigris_altaica
ENSDARG00000012674	rpusd4	90	49.068	ENSPTRG00000004454	RPUSD4	90	47.965	Pan_troglodytes
ENSDARG00000012674	rpusd4	96	47.965	ENSPANG00000015040	RPUSD4	90	47.965	Papio_anubis
ENSDARG00000012674	rpusd4	94	62.426	ENSPKIG00000023986	rpusd4	86	62.426	Paramormyrops_kingsleyae
ENSDARG00000012674	rpusd4	84	53.000	ENSPSIG00000014268	RPUSD4	95	53.000	Pelodiscus_sinensis
ENSDARG00000012674	rpusd4	96	54.179	ENSPMGG00000002806	rpusd4	89	56.075	Periophthalmus_magnuspinnatus
ENSDARG00000012674	rpusd4	97	41.880	ENSPEMG00000000278	Rpusd4	92	41.880	Peromyscus_maniculatus_bairdii
ENSDARG00000012674	rpusd4	86	42.308	ENSPMAG00000008183	rpusd4	97	42.814	Petromyzon_marinus
ENSDARG00000012674	rpusd4	91	51.070	ENSPCIG00000010212	RPUSD4	88	51.070	Phascolarctos_cinereus
ENSDARG00000012674	rpusd4	90	56.970	ENSPFOG00000019030	rpusd4	86	56.970	Poecilia_formosa
ENSDARG00000012674	rpusd4	90	57.622	ENSPLAG00000016848	rpusd4	83	57.622	Poecilia_latipinna
ENSDARG00000012674	rpusd4	90	57.927	ENSPMEG00000017534	rpusd4	83	57.927	Poecilia_mexicana
ENSDARG00000012674	rpusd4	86	57.962	ENSPREG00000005689	rpusd4	81	57.962	Poecilia_reticulata
ENSDARG00000012674	rpusd4	96	47.674	ENSPPYG00000004043	RPUSD4	90	47.674	Pongo_abelii
ENSDARG00000012674	rpusd4	71	51.316	ENSPCAG00000000753	RPUSD4	63	56.364	Procavia_capensis
ENSDARG00000012674	rpusd4	91	48.923	ENSPCOG00000020694	RPUSD4	86	48.923	Propithecus_coquereli
ENSDARG00000012674	rpusd4	91	50.462	ENSPVAG00000000988	RPUSD4	86	50.462	Pteropus_vampyrus
ENSDARG00000012674	rpusd4	90	59.877	ENSPNYG00000009652	rpusd4	83	59.327	Pundamilia_nyererei
ENSDARG00000012674	rpusd4	95	69.795	ENSPNAG00000012264	rpusd4	90	69.795	Pygocentrus_nattereri
ENSDARG00000012674	rpusd4	91	50.307	ENSRNOG00000011567	Rpusd4	85	50.307	Rattus_norvegicus
ENSDARG00000012674	rpusd4	96	48.266	ENSRBIG00000034842	RPUSD4	91	48.266	Rhinopithecus_bieti
ENSDARG00000012674	rpusd4	96	48.266	ENSRROG00000039753	RPUSD4	91	48.266	Rhinopithecus_roxellana
ENSDARG00000012674	rpusd4	96	46.512	ENSSBOG00000030413	RPUSD4	92	46.512	Saimiri_boliviensis_boliviensis
ENSDARG00000012674	rpusd4	85	50.820	ENSSHAG00000008304	RPUSD4	100	50.820	Sarcophilus_harrisii
ENSDARG00000012674	rpusd4	95	59.184	ENSSFOG00015006203	rpusd4	93	58.892	Scleropages_formosus
ENSDARG00000012674	rpusd4	93	61.078	ENSSMAG00000020978	rpusd4	88	61.078	Scophthalmus_maximus
ENSDARG00000012674	rpusd4	94	58.754	ENSSDUG00000013399	rpusd4	88	58.754	Seriola_dumerili
ENSDARG00000012674	rpusd4	94	58.754	ENSSLDG00000023507	rpusd4	88	58.754	Seriola_lalandi_dorsalis
ENSDARG00000012674	rpusd4	97	48.571	ENSSPUG00000001401	RPUSD4	95	48.857	Sphenodon_punctatus
ENSDARG00000012674	rpusd4	96	58.192	ENSSPAG00000012163	rpusd4	91	58.192	Stegastes_partitus
ENSDARG00000012674	rpusd4	96	48.837	ENSSSCG00000015233	RPUSD4	90	48.547	Sus_scrofa
ENSDARG00000012674	rpusd4	84	52.000	ENSTGUG00000000773	RPUSD4	100	52.000	Taeniopygia_guttata
ENSDARG00000012674	rpusd4	94	55.814	ENSTRUG00000012283	rpusd4	88	55.814	Takifugu_rubripes
ENSDARG00000012674	rpusd4	91	58.896	ENSTNIG00000014676	rpusd4	78	60.526	Tetraodon_nigroviridis
ENSDARG00000012674	rpusd4	98	46.591	ENSTTRG00000001555	RPUSD4	93	46.307	Tursiops_truncatus
ENSDARG00000012674	rpusd4	97	49.284	ENSUMAG00000002219	RPUSD4	92	49.284	Ursus_maritimus
ENSDARG00000012674	rpusd4	63	49.558	ENSVPAG00000001066	RPUSD4	84	49.115	Vicugna_pacos
ENSDARG00000012674	rpusd4	97	48.424	ENSVVUG00000020101	RPUSD4	92	48.424	Vulpes_vulpes
ENSDARG00000012674	rpusd4	90	57.622	ENSXCOG00000004676	rpusd4	86	57.622	Xiphophorus_couchianus
ENSDARG00000012674	rpusd4	90	57.622	ENSXMAG00000023351	rpusd4	84	57.622	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005739	mitochondrion	-	IEA	Component
GO:0005759	mitochondrial matrix	-	IEA	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0009451	RNA modification	-	IEA	Process
GO:0009982	pseudouridine synthase activity	-	IEA	Function
GO:0016853	isomerase activity	-	IEA	Function