EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000012763 (Gene tree)
Gene ID: 286784
Gene Symbol: arl13b
Alias: arl2l1|chunp6872|dkfzp761h079|fc23g07|scorpion|un-named hi459|unm hi459|wu:fc23g07|zgc:123149
Full Name: ADP-ribosylation factor-like 13b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 26560 bases
Position: chr1:33668236-33694795
Accession: ZDB-GENE-021217-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000110549	MMR_HSR1	PF01926.23	6e-05	1	1
ENSDARP00000092960	MMR_HSR1	PF01926.23	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000122316	-	2153	-	ENSDARP00000110549	261 (aa)	-	B8JIH7
ENSDART00000149105	-	520	-	-	- (aa)	-	-
ENSDART00000102184	-	2808	-	ENSDARP00000092960	407 (aa)	-	Q8JHI3

Gene Model

Click here to download ENSDARG00000012763's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000012763's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000012763	arl13b	66	32.184	ENSDARG00000101680	arl1	88	34.839
ENSDARG00000012763	arl13b	54	30.714	ENSDARG00000033320	sar1ab	69	30.714
ENSDARG00000012763	arl13b	66	32.749	ENSDARG00000016393	arf2b	100	33.784
ENSDARG00000012763	arl13b	62	30.675	ENSDARG00000094709	arl8	86	30.675
ENSDARG00000012763	arl13b	64	30.539	ENSDARG00000035719	arl5c	84	32.026
ENSDARG00000012763	arl13b	69	38.333	ENSDARG00000069496	arl2	93	38.333
ENSDARG00000012763	arl13b	66	31.250	ENSDARG00000032056	arl6	89	30.857
ENSDARG00000012763	arl13b	69	30.645	ENSDARG00000032708	arl4cb	91	31.319
ENSDARG00000012763	arl13b	66	32.749	ENSDARG00000056582	arf2b	90	32.749
ENSDARG00000012763	arl13b	67	32.759	ENSDARG00000056794	zgc:110197	91	32.759
ENSDARG00000012763	arl13b	66	30.636	ENSDARG00000113899	zgc:77650	91	30.636
ENSDARG00000012763	arl13b	57	37.908	ENSDARG00000063223	arl14	75	37.908
ENSDARG00000012763	arl13b	66	32.164	ENSDARG00000070539	arf3a	90	32.164
ENSDARG00000012763	arl13b	65	33.333	ENSDARG00000099918	arl4aa	89	31.892
ENSDARG00000012763	arl13b	66	30.636	ENSDARG00000070472	arf5	91	30.636
ENSDARG00000012763	arl13b	86	46.429	ENSDARG00000052575	arl13a	50	47.005
ENSDARG00000012763	arl13b	62	32.727	ENSDARG00000070318	arl8bb	88	32.738
ENSDARG00000012763	arl13b	57	35.065	ENSDARG00000045074	arl4d	83	33.908
ENSDARG00000012763	arl13b	66	32.749	ENSDARG00000014763	arf2a	90	32.749
ENSDARG00000012763	arl13b	66	33.526	ENSDARG00000071409	arl3	90	33.526
ENSDARG00000012763	arl13b	62	32.727	ENSDARG00000078686	arl8a	87	32.727
ENSDARG00000012763	arl13b	62	33.540	ENSDARG00000015404	arl3l2	85	33.333
ENSDARG00000012763	arl13b	61	35.185	ENSDARG00000036637	arl11	88	35.185
ENSDARG00000012763	arl13b	66	33.333	ENSDARG00000111106	arl3l1	87	33.140
ENSDARG00000012763	arl13b	70	30.319	ENSDARG00000033182	arl4ab	89	30.645
ENSDARG00000012763	arl13b	62	32.727	ENSDARG00000006915	arl8ba	87	32.727
ENSDARG00000012763	arl13b	73	31.579	ENSDARG00000009484	arf1	98	31.579
ENSDARG00000012763	arl13b	66	30.000	ENSDARG00000057857	arfrp1	93	30.000
ENSDARG00000012763	arl13b	66	32.749	ENSDARG00000036998	arf3b	90	32.749
ENSDARG00000012763	arl13b	70	33.152	ENSDARG00000074210	ARF5	86	33.152

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000012763	arl13b	99	80.145	ENSAPOG00000013256	arl13b	99	79.661	Acanthochromis_polyacanthus
ENSDARG00000012763	arl13b	100	79.115	ENSACIG00000017582	arl13b	90	92.627	Amphilophus_citrinellus
ENSDARG00000012763	arl13b	99	80.387	ENSAOCG00000002828	arl13b	99	79.903	Amphiprion_ocellaris
ENSDARG00000012763	arl13b	83	92.627	ENSAPEG00000014654	arl13b	99	80.206	Amphiprion_percula
ENSDARG00000012763	arl13b	95	77.749	ENSATEG00000017586	arl13b	97	78.372	Anabas_testudineus
ENSDARG00000012763	arl13b	84	80.909	ENSACAG00000000523	ARL13B	99	61.928	Anolis_carolinensis
ENSDARG00000012763	arl13b	83	92.627	ENSACLG00000024227	arl13b	86	91.584	Astatotilapia_calliptera
ENSDARG00000012763	arl13b	100	84.428	ENSAMXG00000042824	arl13b	100	83.415	Astyanax_mexicanus
ENSDARG00000012763	arl13b	78	80.788	ENSCAPG00000006764	ARL13B	75	80.303	Cavia_aperea
ENSDARG00000012763	arl13b	82	77.209	ENSCPOG00000002558	ARL13B	100	59.169	Cavia_porcellus
ENSDARG00000012763	arl13b	80	80.000	ENSCLAG00000006379	ARL13B	100	60.192	Chinchilla_lanigera
ENSDARG00000012763	arl13b	85	82.063	ENSCPBG00000005599	ARL13B	100	65.057	Chrysemys_picta_bellii
ENSDARG00000012763	arl13b	88	92.576	ENSCSEG00000005258	arl13b	99	72.087	Cynoglossus_semilaevis
ENSDARG00000012763	arl13b	100	74.634	ENSCVAG00000001545	arl13b	86	89.401	Cyprinodon_variegatus
ENSDARG00000012763	arl13b	88	55.217	ENSEBUG00000006528	arl13b	90	49.627	Eptatretus_burgeri
ENSDARG00000012763	arl13b	90	78.723	ENSEEUG00000010823	ARL13B	76	78.723	Erinaceus_europaeus
ENSDARG00000012763	arl13b	83	78.704	ENSFALG00000001654	ARL13B	99	57.463	Ficedula_albicollis
ENSDARG00000012763	arl13b	87	79.204	ENSFDAG00000006556	ARL13B	100	61.485	Fukomys_damarensis
ENSDARG00000012763	arl13b	83	88.479	ENSFHEG00000016049	arl13b	99	74.286	Fundulus_heteroclitus
ENSDARG00000012763	arl13b	79	90.291	ENSGMOG00000018628	arl13b	100	63.918	Gadus_morhua
ENSDARG00000012763	arl13b	99	82.692	ENSGAFG00000000025	arl13b	99	72.953	Gambusia_affinis
ENSDARG00000012763	arl13b	88	89.956	ENSGACG00000014228	arl13b	99	74.877	Gasterosteus_aculeatus
ENSDARG00000012763	arl13b	87	80.973	ENSGAGG00000019336	ARL13B	100	64.368	Gopherus_agassizii
ENSDARG00000012763	arl13b	100	78.102	ENSHBUG00000020619	arl13b	100	78.729	Haplochromis_burtoni
ENSDARG00000012763	arl13b	83	93.088	ENSHCOG00000006106	arl13b	99	77.003	Hippocampus_comes
ENSDARG00000012763	arl13b	99	77.833	ENSKMAG00000001122	arl13b	99	78.079	Kryptolebias_marmoratus
ENSDARG00000012763	arl13b	99	78.398	ENSLBEG00000014612	arl13b	99	77.670	Labrus_bergylta
ENSDARG00000012763	arl13b	82	91.589	ENSLOCG00000010465	arl13b	100	72.831	Lepisosteus_oculatus
ENSDARG00000012763	arl13b	85	94.619	ENSMAMG00000021452	arl13b	99	79.024	Mastacembelus_armatus
ENSDARG00000012763	arl13b	100	76.585	ENSMZEG00005017827	arl13b	100	78.484	Maylandia_zebra
ENSDARG00000012763	arl13b	84	92.727	ENSMMOG00000010253	arl13b	99	74.755	Mola_mola
ENSDARG00000012763	arl13b	89	92.275	ENSMALG00000014655	arl13b	99	67.734	Monopterus_albus
ENSDARG00000012763	arl13b	84	80.455	MGP_CAROLIEiJ_G0020856	Arl13b	100	62.442	Mus_caroli
ENSDARG00000012763	arl13b	84	80.455	ENSMUSG00000022911	Arl13b	100	63.279	Mus_musculus
ENSDARG00000012763	arl13b	84	80.455	MGP_PahariEiJ_G0016561	Arl13b	100	63.510	Mus_pahari
ENSDARG00000012763	arl13b	84	80.455	MGP_SPRETEiJ_G0021763	Arl13b	100	62.818	Mus_spretus
ENSDARG00000012763	arl13b	79	78.744	ENSMLUG00000017473	ARL13B	96	63.107	Myotis_lucifugus
ENSDARG00000012763	arl13b	92	89.958	ENSNBRG00000004078	arl13b	87	92.627	Neolamprologus_brichardi
ENSDARG00000012763	arl13b	90	74.043	ENSNLEG00000001772	ARL13B	100	58.372	Nomascus_leucogenys
ENSDARG00000012763	arl13b	80	68.095	ENSMEUG00000008036	-	61	61.600	Notamacropus_eugenii
ENSDARG00000012763	arl13b	88	79.565	ENSODEG00000011381	ARL13B	100	62.326	Octodon_degus
ENSDARG00000012763	arl13b	83	92.627	ENSONIG00000001864	arl13b	100	73.455	Oreochromis_niloticus
ENSDARG00000012763	arl13b	99	76.847	ENSORLG00000006350	arl13b	86	92.166	Oryzias_latipes
ENSDARG00000012763	arl13b	99	77.340	ENSORLG00020013754	arl13b	99	76.847	Oryzias_latipes_hni
ENSDARG00000012763	arl13b	99	76.847	ENSORLG00015012586	arl13b	99	76.847	Oryzias_latipes_hsok
ENSDARG00000012763	arl13b	83	87.558	ENSOMEG00000010187	arl13b	84	87.558	Oryzias_melastigma
ENSDARG00000012763	arl13b	88	82.609	ENSPSIG00000018115	ARL13B	99	63.438	Pelodiscus_sinensis
ENSDARG00000012763	arl13b	99	77.696	ENSPMGG00000004584	arl13b	99	77.561	Periophthalmus_magnuspinnatus
ENSDARG00000012763	arl13b	87	63.717	ENSPCIG00000026984	ARL13B	98	46.404	Phascolarctos_cinereus
ENSDARG00000012763	arl13b	100	73.710	ENSPFOG00000005379	arl13b	100	74.201	Poecilia_formosa
ENSDARG00000012763	arl13b	83	88.479	ENSPLAG00000008699	arl13b	99	74.346	Poecilia_latipinna
ENSDARG00000012763	arl13b	97	72.774	ENSPMEG00000015387	arl13b	99	73.846	Poecilia_mexicana
ENSDARG00000012763	arl13b	100	72.794	ENSPREG00000006291	arl13b	100	73.039	Poecilia_reticulata
ENSDARG00000012763	arl13b	95	74.227	ENSPNYG00000022879	arl13b	98	74.485	Pundamilia_nyererei
ENSDARG00000012763	arl13b	100	85.610	ENSPNAG00000003803	arl13b	100	85.610	Pygocentrus_nattereri
ENSDARG00000012763	arl13b	91	83.193	ENSSFOG00015005491	arl13b	90	81.092	Scleropages_formosus
ENSDARG00000012763	arl13b	81	71.831	ENSSFOG00015023057	arl13b	84	71.831	Scleropages_formosus
ENSDARG00000012763	arl13b	99	72.573	ENSSMAG00000015450	arl13b	99	71.981	Scophthalmus_maximus
ENSDARG00000012763	arl13b	83	94.470	ENSSDUG00000005560	arl13b	96	80.052	Seriola_dumerili
ENSDARG00000012763	arl13b	83	94.470	ENSSLDG00000013361	arl13b	99	80.463	Seriola_lalandi_dorsalis
ENSDARG00000012763	arl13b	86	77.679	ENSSARG00000003872	ARL13B	99	62.617	Sorex_araneus
ENSDARG00000012763	arl13b	91	80.591	ENSSPUG00000006649	ARL13B	88	81.567	Sphenodon_punctatus
ENSDARG00000012763	arl13b	83	93.088	ENSSPAG00000016442	arl13b	91	78.392	Stegastes_partitus
ENSDARG00000012763	arl13b	88	78.261	ENSTGUG00000013493	ARL13B	100	57.110	Taeniopygia_guttata
ENSDARG00000012763	arl13b	90	70.168	ENSTRUG00000013035	-	84	70.046	Takifugu_rubripes
ENSDARG00000012763	arl13b	89	66.953	ENSTRUG00000003641	arl13b	87	66.953	Takifugu_rubripes
ENSDARG00000012763	arl13b	87	77.434	ENSVVUG00000021511	ARL13B	100	57.009	Vulpes_vulpes
ENSDARG00000012763	arl13b	80	39.810	ENSXETG00000026166	arl13a	50	39.810	Xenopus_tropicalis
ENSDARG00000012763	arl13b	89	81.974	ENSXETG00000032383	ARL13B	100	75.269	Xenopus_tropicalis
ENSDARG00000012763	arl13b	100	72.482	ENSXCOG00000016955	arl13b	100	72.482	Xiphophorus_couchianus
ENSDARG00000012763	arl13b	83	88.479	ENSXMAG00000002089	arl13b	99	74.346	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005886	plasma membrane	-	IEA	Component
GO:0005929	cilium	21873635.	IBA	Component
GO:0005929	cilium	19008302.19906870.	IDA	Component
GO:0005929	cilium	-	IEA	Component
GO:0007224	smoothened signaling pathway	-	ISS	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0021532	neural tube patterning	-	ISS	Process
GO:0021830	interneuron migration from the subpallium to the cortex	-	ISS	Process
GO:0021943	formation of radial glial scaffolds	-	ISS	Process
GO:0035845	photoreceptor cell outer segment organization	27571019.	IGI	Process
GO:0035845	photoreceptor cell outer segment organization	27571019.	IMP	Process
GO:0042995	cell projection	-	IEA	Component
GO:0060170	ciliary membrane	21873635.	IBA	Component
GO:0060170	ciliary membrane	-	ISS	Component
GO:0060271	cilium assembly	26582389.27571019.	IGI	Process
GO:0060271	cilium assembly	15269167.19906870.25448689.27207957.27571019.	IMP	Process
GO:0097500	receptor localization to non-motile cilium	21873635.	IBA	Process
GO:0097730	non-motile cilium	21873635.	IBA	Component
GO:1905515	non-motile cilium assembly	21873635.	IBA	Process
GO:1905515	non-motile cilium assembly	-	ISS	Process