EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000012776 (Gene tree)
Gene ID: 559803
Gene Symbol: smarca1
Alias: si:dkey-148b12.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 35655 bases
Position: chr5:21852714-21888368
Accession: ZDB-GENE-070705-296
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000023313	ResIII	PF04851.15	7.2e-12	1	1
ENSDARP00000023313	DEAD	PF00270.29	7.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000144319	-	770	-	-	- (aa)	-	-
ENSDART00000020725	-	3843	XM_005165157	ENSDARP00000023313	1036 (aa)	XP_005165214	A5WUY4
ENSDART00000141350	-	518	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000012776's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000012776's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000012776	smarca1	52	44.973	ENSDARG00000015471	chd1l	53	44.872
ENSDARG00000012776	smarca1	99	81.086	ENSDARG00000052348	smarca5	95	82.260
ENSDARG00000012776	smarca1	51	46.825	ENSDARG00000057738	hells	61	46.825

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000012776	smarca1	97	85.375	ENSG00000102038	SMARCA1	93	85.375	Homo_sapiens
ENSDARG00000012776	smarca1	96	82.915	ENSAPOG00000016035	smarca5	98	82.869	Acanthochromis_polyacanthus
ENSDARG00000012776	smarca1	97	84.562	ENSAMEG00000015218	SMARCA1	93	84.562	Ailuropoda_melanoleuca
ENSDARG00000012776	smarca1	89	82.863	ENSACIG00000016982	smarca5	99	82.951	Amphilophus_citrinellus
ENSDARG00000012776	smarca1	96	82.915	ENSAOCG00000015578	smarca5	94	82.915	Amphiprion_ocellaris
ENSDARG00000012776	smarca1	96	82.915	ENSAPEG00000011117	smarca5	99	83.045	Amphiprion_percula
ENSDARG00000012776	smarca1	99	81.068	ENSATEG00000012894	smarca5	94	83.640	Anabas_testudineus
ENSDARG00000012776	smarca1	96	88.855	ENSAPLG00000013149	SMARCA1	99	88.855	Anas_platyrhynchos
ENSDARG00000012776	smarca1	99	87.175	ENSACAG00000011376	SMARCA1	94	88.374	Anolis_carolinensis
ENSDARG00000012776	smarca1	97	80.534	ENSANAG00000023098	SMARCA1	93	80.534	Aotus_nancymaae
ENSDARG00000012776	smarca1	96	83.083	ENSACLG00000025356	smarca5	94	83.083	Astatotilapia_calliptera
ENSDARG00000012776	smarca1	96	83.333	ENSAMXG00000005709	smarca5	94	83.317	Astyanax_mexicanus
ENSDARG00000012776	smarca1	92	93.075	ENSAMXG00000011227	smarca1	100	93.075	Astyanax_mexicanus
ENSDARG00000012776	smarca1	98	85.094	ENSBTAG00000002292	SMARCA1	93	84.791	Bos_taurus
ENSDARG00000012776	smarca1	94	62.563	WBGene00002169	isw-1	95	61.919	Caenorhabditis_elegans
ENSDARG00000012776	smarca1	97	85.375	ENSCJAG00000002868	SMARCA1	93	85.375	Callithrix_jacchus
ENSDARG00000012776	smarca1	97	75.996	ENSCAFG00000018673	SMARCA1	99	77.535	Canis_familiaris
ENSDARG00000012776	smarca1	94	88.889	ENSCAFG00020001751	SMARCA1	93	88.889	Canis_lupus_dingo
ENSDARG00000012776	smarca1	98	85.192	ENSCHIG00000009837	SMARCA1	93	85.192	Capra_hircus
ENSDARG00000012776	smarca1	99	83.493	ENSTSYG00000004240	SMARCA1	97	85.757	Carlito_syrichta
ENSDARG00000012776	smarca1	98	84.004	ENSCPOG00000013601	SMARCA1	94	84.195	Cavia_porcellus
ENSDARG00000012776	smarca1	97	82.510	ENSCCAG00000030817	SMARCA1	93	82.510	Cebus_capucinus
ENSDARG00000012776	smarca1	96	86.103	ENSCATG00000015921	SMARCA1	93	86.103	Cercocebus_atys
ENSDARG00000012776	smarca1	98	84.403	ENSCLAG00000002171	SMARCA1	93	84.403	Chinchilla_lanigera
ENSDARG00000012776	smarca1	97	85.375	ENSCSAG00000008460	SMARCA1	93	85.375	Chlorocebus_sabaeus
ENSDARG00000012776	smarca1	98	88.137	ENSCPBG00000001146	SMARCA1	94	88.473	Chrysemys_picta_bellii
ENSDARG00000012776	smarca1	99	70.862	ENSCING00000004110	swi/snf	97	71.767	Ciona_intestinalis
ENSDARG00000012776	smarca1	96	72.417	ENSCSAVG00000004620	-	100	72.737	Ciona_savignyi
ENSDARG00000012776	smarca1	97	85.474	ENSCANG00000007183	SMARCA1	93	85.474	Colobus_angolensis_palliatus
ENSDARG00000012776	smarca1	98	84.501	ENSCGRG00001010776	Smarca1	93	84.501	Cricetulus_griseus_chok1gshd
ENSDARG00000012776	smarca1	96	84.585	ENSCGRG00000015301	Smarca1	97	84.585	Cricetulus_griseus_crigri
ENSDARG00000012776	smarca1	96	82.814	ENSCSEG00000000328	smarca5	94	82.748	Cynoglossus_semilaevis
ENSDARG00000012776	smarca1	96	82.482	ENSCVAG00000008668	smarca5	99	82.488	Cyprinodon_variegatus
ENSDARG00000012776	smarca1	96	85.185	ENSDNOG00000004315	SMARCA1	94	85.513	Dasypus_novemcinctus
ENSDARG00000012776	smarca1	97	84.653	ENSDORG00000009270	Smarca1	93	85.714	Dipodomys_ordii
ENSDARG00000012776	smarca1	98	70.278	FBgn0011604	Iswi	97	71.875	Drosophila_melanogaster
ENSDARG00000012776	smarca1	80	84.821	ENSETEG00000017426	SMARCA1	85	84.821	Echinops_telfairi
ENSDARG00000012776	smarca1	99	80.174	ENSEBUG00000001239	smarca5	98	81.182	Eptatretus_burgeri
ENSDARG00000012776	smarca1	97	80.674	ENSEASG00005008218	SMARCA1	99	81.836	Equus_asinus_asinus
ENSDARG00000012776	smarca1	98	85.094	ENSECAG00000012106	SMARCA1	93	85.094	Equus_caballus
ENSDARG00000012776	smarca1	79	87.417	ENSEEUG00000014927	SMARCA1	82	87.417	Erinaceus_europaeus
ENSDARG00000012776	smarca1	100	90.883	ENSELUG00000010515	smarca1	100	91.118	Esox_lucius
ENSDARG00000012776	smarca1	97	85.178	ENSFCAG00000018496	SMARCA1	94	84.180	Felis_catus
ENSDARG00000012776	smarca1	90	89.103	ENSFALG00000000209	SMARCA1	98	89.103	Ficedula_albicollis
ENSDARG00000012776	smarca1	96	84.394	ENSFDAG00000009818	SMARCA1	96	84.394	Fukomys_damarensis
ENSDARG00000012776	smarca1	96	82.583	ENSFHEG00000007687	smarca5	93	82.583	Fundulus_heteroclitus
ENSDARG00000012776	smarca1	96	88.147	ENSGALG00000008431	SMARCA1	98	87.917	Gallus_gallus
ENSDARG00000012776	smarca1	99	80.680	ENSGAFG00000017731	smarca5	94	82.583	Gambusia_affinis
ENSDARG00000012776	smarca1	95	89.170	ENSGAGG00000023575	SMARCA1	99	89.170	Gopherus_agassizii
ENSDARG00000012776	smarca1	72	96.000	ENSGGOG00000012841	-	94	96.000	Gorilla_gorilla
ENSDARG00000012776	smarca1	98	83.909	ENSHGLG00000003080	SMARCA1	93	83.909	Heterocephalus_glaber_female
ENSDARG00000012776	smarca1	97	83.399	ENSHGLG00100001102	SMARCA1	99	83.399	Heterocephalus_glaber_male
ENSDARG00000012776	smarca1	96	82.748	ENSHCOG00000005458	smarca5	94	82.748	Hippocampus_comes
ENSDARG00000012776	smarca1	99	80.810	ENSIPUG00000005229	SMARCA5	98	81.998	Ictalurus_punctatus
ENSDARG00000012776	smarca1	100	90.173	ENSIPUG00000016905	Smarca1	100	91.036	Ictalurus_punctatus
ENSDARG00000012776	smarca1	98	85.291	ENSSTOG00000014524	SMARCA1	95	85.189	Ictidomys_tridecemlineatus
ENSDARG00000012776	smarca1	97	84.646	ENSJJAG00000002593	Smarca1	93	85.126	Jaculus_jaculus
ENSDARG00000012776	smarca1	96	82.849	ENSKMAG00000003777	smarca5	94	82.683	Kryptolebias_marmoratus
ENSDARG00000012776	smarca1	91	83.157	ENSLBEG00000013295	SMARCA1	100	83.415	Labrus_bergylta
ENSDARG00000012776	smarca1	96	81.982	ENSLBEG00000018112	smarca5	94	81.982	Labrus_bergylta
ENSDARG00000012776	smarca1	99	87.923	ENSLACG00000016697	SMARCA1	99	87.536	Latimeria_chalumnae
ENSDARG00000012776	smarca1	100	90.316	ENSLOCG00000014591	smarca1	100	90.221	Lepisosteus_oculatus
ENSDARG00000012776	smarca1	98	84.102	ENSLAFG00000000896	SMARCA1	99	84.515	Loxodonta_africana
ENSDARG00000012776	smarca1	97	85.375	ENSMFAG00000002117	SMARCA1	96	85.930	Macaca_fascicularis
ENSDARG00000012776	smarca1	96	86.103	ENSMMUG00000008818	SMARCA1	99	86.578	Macaca_mulatta
ENSDARG00000012776	smarca1	96	86.103	ENSMNEG00000041768	SMARCA1	96	85.930	Macaca_nemestrina
ENSDARG00000012776	smarca1	97	85.277	ENSMLEG00000043198	SMARCA1	93	85.277	Mandrillus_leucophaeus
ENSDARG00000012776	smarca1	96	83.350	ENSMAMG00000014294	smarca5	94	83.350	Mastacembelus_armatus
ENSDARG00000012776	smarca1	96	83.083	ENSMZEG00005009369	smarca5	94	83.083	Maylandia_zebra
ENSDARG00000012776	smarca1	98	86.893	ENSMGAG00000007042	SMARCA1	99	87.147	Meleagris_gallopavo
ENSDARG00000012776	smarca1	96	84.985	ENSMAUG00000008133	Smarca1	93	84.985	Mesocricetus_auratus
ENSDARG00000012776	smarca1	98	85.390	ENSMICG00000015768	SMARCA1	94	85.390	Microcebus_murinus
ENSDARG00000012776	smarca1	98	83.988	ENSMOCG00000009464	Smarca1	94	83.988	Microtus_ochrogaster
ENSDARG00000012776	smarca1	97	80.178	ENSMMOG00000005547	smarca5	99	80.178	Mola_mola
ENSDARG00000012776	smarca1	99	86.948	ENSMODG00000013187	-	95	88.276	Monodelphis_domestica
ENSDARG00000012776	smarca1	96	82.347	ENSMALG00000002081	smarca5	96	82.454	Monopterus_albus
ENSDARG00000012776	smarca1	98	84.479	MGP_CAROLIEiJ_G0033034	Smarca1	94	84.479	Mus_caroli
ENSDARG00000012776	smarca1	98	84.479	ENSMUSG00000031099	Smarca1	94	84.479	Mus_musculus
ENSDARG00000012776	smarca1	97	84.464	MGP_PahariEiJ_G0031579	Smarca1	94	84.464	Mus_pahari
ENSDARG00000012776	smarca1	98	84.479	MGP_SPRETEiJ_G0034192	Smarca1	94	84.479	Mus_spretus
ENSDARG00000012776	smarca1	97	84.277	ENSMPUG00000017423	SMARCA1	88	84.277	Mustela_putorius_furo
ENSDARG00000012776	smarca1	98	83.155	ENSMLUG00000029614	SMARCA1	94	83.155	Myotis_lucifugus
ENSDARG00000012776	smarca1	96	85.385	ENSNGAG00000006492	Smarca1	93	85.385	Nannospalax_galili
ENSDARG00000012776	smarca1	96	83.183	ENSNBRG00000004463	smarca5	98	83.183	Neolamprologus_brichardi
ENSDARG00000012776	smarca1	96	85.040	ENSNLEG00000015179	SMARCA1	97	85.040	Nomascus_leucogenys
ENSDARG00000012776	smarca1	93	79.363	ENSMEUG00000008819	SMARCA1	99	79.363	Notamacropus_eugenii
ENSDARG00000012776	smarca1	97	82.739	ENSODEG00000012163	SMARCA1	93	84.294	Octodon_degus
ENSDARG00000012776	smarca1	96	83.183	ENSONIG00000009993	smarca5	94	83.183	Oreochromis_niloticus
ENSDARG00000012776	smarca1	95	89.271	ENSOANG00000002862	SMARCA1	99	89.271	Ornithorhynchus_anatinus
ENSDARG00000012776	smarca1	98	84.896	ENSOCUG00000001047	SMARCA1	94	84.896	Oryctolagus_cuniculus
ENSDARG00000012776	smarca1	96	83.250	ENSORLG00000021998	smarca5	94	83.250	Oryzias_latipes
ENSDARG00000012776	smarca1	96	83.350	ENSORLG00020017679	smarca5	94	83.350	Oryzias_latipes_hni
ENSDARG00000012776	smarca1	96	83.250	ENSORLG00015017210	smarca5	94	83.250	Oryzias_latipes_hsok
ENSDARG00000012776	smarca1	96	83.651	ENSOMEG00000000086	smarca5	94	83.651	Oryzias_melastigma
ENSDARG00000012776	smarca1	96	85.274	ENSOGAG00000004399	SMARCA1	93	85.274	Otolemur_garnettii
ENSDARG00000012776	smarca1	98	84.113	ENSOARG00000014638	SMARCA1	99	86.044	Ovis_aries
ENSDARG00000012776	smarca1	97	85.375	ENSPPAG00000034647	SMARCA1	93	85.375	Pan_paniscus
ENSDARG00000012776	smarca1	97	85.277	ENSPPRG00000008929	SMARCA1	94	84.277	Panthera_pardus
ENSDARG00000012776	smarca1	97	83.479	ENSPTIG00000000915	SMARCA1	97	83.479	Panthera_tigris_altaica
ENSDARG00000012776	smarca1	97	85.375	ENSPTRG00000049876	SMARCA1	93	86.103	Pan_troglodytes
ENSDARG00000012776	smarca1	97	85.375	ENSPANG00000003871	SMARCA1	93	85.375	Papio_anubis
ENSDARG00000012776	smarca1	98	87.451	ENSPKIG00000013411	smarca1	99	87.353	Paramormyrops_kingsleyae
ENSDARG00000012776	smarca1	98	87.379	ENSPSIG00000010101	SMARCA1	99	89.372	Pelodiscus_sinensis
ENSDARG00000012776	smarca1	96	85.485	ENSPEMG00000017503	Smarca1	93	85.485	Peromyscus_maniculatus_bairdii
ENSDARG00000012776	smarca1	98	88.322	ENSPCIG00000015460	SMARCA1	97	89.268	Phascolarctos_cinereus
ENSDARG00000012776	smarca1	96	82.849	ENSPFOG00000007649	smarca5	94	82.683	Poecilia_formosa
ENSDARG00000012776	smarca1	96	82.849	ENSPLAG00000003363	smarca5	94	82.683	Poecilia_latipinna
ENSDARG00000012776	smarca1	96	82.748	ENSPMEG00000019849	smarca5	94	82.583	Poecilia_mexicana
ENSDARG00000012776	smarca1	96	82.748	ENSPREG00000023250	smarca5	94	82.583	Poecilia_reticulata
ENSDARG00000012776	smarca1	97	82.708	ENSPPYG00000020703	SMARCA1	93	82.708	Pongo_abelii
ENSDARG00000012776	smarca1	77	83.871	ENSPCOG00000020722	SMARCA1	93	81.034	Propithecus_coquereli
ENSDARG00000012776	smarca1	90	85.320	ENSPVAG00000003805	SMARCA1	93	78.706	Pteropus_vampyrus
ENSDARG00000012776	smarca1	59	85.950	ENSPNYG00000012299	smarca5	89	85.950	Pundamilia_nyererei
ENSDARG00000012776	smarca1	98	84.501	ENSRNOG00000003762	Smarca1	94	84.501	Rattus_norvegicus
ENSDARG00000012776	smarca1	97	85.474	ENSRROG00000034167	SMARCA1	93	85.474	Rhinopithecus_roxellana
ENSDARG00000012776	smarca1	96	86.145	ENSSBOG00000020641	SMARCA1	99	86.145	Saimiri_boliviensis_boliviensis
ENSDARG00000012776	smarca1	95	82.609	ENSSHAG00000013518	SMARCA1	99	82.609	Sarcophilus_harrisii
ENSDARG00000012776	smarca1	97	82.061	ENSSFOG00015016794	smarca5	99	82.727	Scleropages_formosus
ENSDARG00000012776	smarca1	100	90.586	ENSSFOG00015009043	smarca1	100	90.586	Scleropages_formosus
ENSDARG00000012776	smarca1	97	81.540	ENSSMAG00000004801	smarca5	96	81.540	Scophthalmus_maximus
ENSDARG00000012776	smarca1	96	82.849	ENSSDUG00000020690	smarca5	94	82.849	Seriola_dumerili
ENSDARG00000012776	smarca1	96	82.849	ENSSLDG00000025190	smarca5	94	82.849	Seriola_lalandi_dorsalis
ENSDARG00000012776	smarca1	80	87.900	ENSSARG00000000842	SMARCA1	83	87.900	Sorex_araneus
ENSDARG00000012776	smarca1	95	89.036	ENSSPUG00000000590	SMARCA1	97	87.769	Sphenodon_punctatus
ENSDARG00000012776	smarca1	96	83.015	ENSSPAG00000002894	smarca5	96	82.976	Stegastes_partitus
ENSDARG00000012776	smarca1	92	91.475	ENSSSCG00000012649	SMARCA1	93	91.475	Sus_scrofa
ENSDARG00000012776	smarca1	96	88.465	ENSTGUG00000003899	-	99	88.465	Taeniopygia_guttata
ENSDARG00000012776	smarca1	97	82.371	ENSTRUG00000014094	smarca5	94	82.371	Takifugu_rubripes
ENSDARG00000012776	smarca1	96	81.508	ENSTNIG00000017717	smarca5	94	81.175	Tetraodon_nigroviridis
ENSDARG00000012776	smarca1	88	84.957	ENSTBEG00000014973	SMARCA1	90	84.957	Tupaia_belangeri
ENSDARG00000012776	smarca1	94	82.912	ENSTTRG00000006168	SMARCA1	97	82.811	Tursiops_truncatus
ENSDARG00000012776	smarca1	97	84.965	ENSUAMG00000020201	SMARCA1	93	88.889	Ursus_americanus
ENSDARG00000012776	smarca1	96	81.754	ENSUMAG00000004073	SMARCA1	97	86.715	Ursus_maritimus
ENSDARG00000012776	smarca1	73	91.475	ENSVPAG00000010492	-	79	91.475	Vicugna_pacos
ENSDARG00000012776	smarca1	97	85.375	ENSVVUG00000008878	SMARCA1	99	87.001	Vulpes_vulpes
ENSDARG00000012776	smarca1	98	88.322	ENSXETG00000001526	smarca1	99	88.322	Xenopus_tropicalis
ENSDARG00000012776	smarca1	96	82.482	ENSXCOG00000011170	smarca5	97	82.482	Xiphophorus_couchianus
ENSDARG00000012776	smarca1	99	80.583	ENSXMAG00000009678	smarca5	98	83.191	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	26041917.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006338	chromatin remodeling	-	IEA	Process
GO:0016589	NURF complex	-	IEA	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	-	IEA	Function
GO:0016887	ATPase activity	-	IEA	Function
GO:0021999	neural plate anterior/posterior regionalization	26041917.	IGI	Process
GO:0031491	nucleosome binding	-	IEA	Function
GO:0043044	ATP-dependent chromatin remodeling	-	IEA	Process
GO:0060215	primitive hemopoiesis	24240475.	IMP	Process
GO:0060319	primitive erythrocyte differentiation	24240475.	IMP	Process