EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000013351 (Gene tree)
Gene ID: 678563
Gene Symbol: cirbpb
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein b
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 4640 bases
Position: chr22:18542010-18546649
Accession: ZDB-GENE-030131-5841
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000136812	RRM_1	PF00076.22	1.3e-26	1	1
ENSDARP00000096177	RRM_1	PF00076.22	1.9e-26	1	1
ENSDARP00000096178	RRM_1	PF00076.22	2e-26	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000138915	-	2794	NR_132111	-	- (aa)	-	-
ENSDART00000132156	-	643	-	ENSDARP00000117191	55 (aa)	-	F1QPW8
ENSDART00000171277	-	1012	-	ENSDARP00000136812	184 (aa)	-	Q7ZUQ9
ENSDART00000105405	-	1574	XM_021469377	ENSDARP00000096178	224 (aa)	XP_021325052	F1R6L3
ENSDART00000105404	-	1831	-	ENSDARP00000096177	220 (aa)	-	F1R6L4

Gene Model

Click here to download ENSDARG00000013351's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000013351's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000013351	cirbpb	54	40.000	ENSDARG00000059351	hnrnpa3	62	47.368
ENSDARG00000013351	cirbpb	54	47.297	ENSDARG00000032614	msi2b	82	46.479
ENSDARG00000013351	cirbpb	50	33.696	ENSDARG00000100815	srsf3a	51	36.486
ENSDARG00000013351	cirbpb	63	36.207	ENSDARG00000014898	ncbp2	56	33.333
ENSDARG00000013351	cirbpb	54	37.255	ENSDARG00000031809	rbm24b	53	43.421
ENSDARG00000013351	cirbpb	66	33.065	ENSDARG00000102995	rbm24a	65	42.105
ENSDARG00000013351	cirbpb	50	33.696	ENSDARG00000025397	srsf3a	51	36.486

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000013351	cirbpb	92	58.173	ENSACIG00000016116	cirbpa	89	58.929	Amphilophus_citrinellus
ENSDARG00000013351	cirbpb	92	58.654	ENSACLG00000002094	-	89	59.524	Astatotilapia_calliptera
ENSDARG00000013351	cirbpb	92	70.813	ENSAMXG00000015612	cirbpb	84	68.599	Astyanax_mexicanus
ENSDARG00000013351	cirbpb	92	58.559	ENSCSEG00000014344	cirbpa	78	56.287	Cynoglossus_semilaevis
ENSDARG00000013351	cirbpb	81	49.351	ENSELUG00000004675	-	97	56.150	Esox_lucius
ENSDARG00000013351	cirbpb	92	59.901	ENSFHEG00000002580	cirbpa	100	52.885	Fundulus_heteroclitus
ENSDARG00000013351	cirbpb	92	57.488	ENSKMAG00000005905	cirbpa	100	51.691	Kryptolebias_marmoratus
ENSDARG00000013351	cirbpb	92	54.976	ENSLBEG00000000292	cirbpa	52	72.289	Labrus_bergylta
ENSDARG00000013351	cirbpb	65	65.833	ENSLBEG00000027731	-	67	75.904	Labrus_bergylta
ENSDARG00000013351	cirbpb	92	57.692	ENSONIG00000010169	cirbpa	89	59.524	Oreochromis_niloticus
ENSDARG00000013351	cirbpb	92	59.406	ENSPMGG00000017342	cirbpa	95	54.634	Periophthalmus_magnuspinnatus
ENSDARG00000013351	cirbpb	92	74.408	ENSPNAG00000019997	cirbpb	100	72.300	Pygocentrus_nattereri
ENSDARG00000013351	cirbpb	92	68.599	ENSSFOG00015005346	cirbpb	100	67.788	Scleropages_formosus
ENSDARG00000013351	cirbpb	92	50.962	ENSSPAG00000023037	cirbpa	51	77.108	Stegastes_partitus
ENSDARG00000013351	cirbpb	92	58.738	ENSTRUG00000010187	cirbpa	63	77.647	Takifugu_rubripes
ENSDARG00000013351	cirbpb	99	53.476	ENSXCOG00000008262	cirbpa	92	73.973	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005681	spliceosomal complex	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0008266	poly(U) RNA binding	21873635.	IBA	Function
GO:0009409	response to cold	21873635.	IBA	Process
GO:0009409	response to cold	18805806.	IDA	Process
GO:0030371	translation repressor activity	21873635.	IBA	Function
GO:0045727	positive regulation of translation	21873635.	IBA	Process
GO:0048026	positive regulation of mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0070181	small ribosomal subunit rRNA binding	21873635.	IBA	Function
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component