EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000013457 (Gene tree)
Gene ID: 406795
Gene Symbol: mtrex
Alias: julie|mtrex|skiv2l2|wu:fd11a05|zgc:63838
Full Name: Mtr4 exosome RNA helicase
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 68268 bases
Position: chr10:8197827-8266094
Accession: ZDB-GENE-040426-2854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000024380	rRNA_proc-arch	PF13234.6	3.5e-87	1	1
ENSDARP00000024380	DEAD	PF00270.29	5.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000026244	-	3333	-	ENSDARP00000024380	1034 (aa)	-	F1QD61
ENSDART00000157843	-	535	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000013457's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000013457's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000013457	mtrex	89	36.373	ENSDARG00000062206	skiv2l	75	36.684

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000013457	mtrex	100	84.681	ENSG00000039123	MTREX	100	84.909	Homo_sapiens
ENSDARG00000013457	mtrex	100	86.307	ENSAPOG00000007814	mtrex	100	86.307	Acanthochromis_polyacanthus
ENSDARG00000013457	mtrex	100	84.857	ENSAMEG00000013856	MTREX	100	84.857	Ailuropoda_melanoleuca
ENSDARG00000013457	mtrex	100	84.913	ENSACIG00000015117	mtrex	100	84.913	Amphilophus_citrinellus
ENSDARG00000013457	mtrex	100	86.692	ENSAOCG00000011884	mtrex	100	86.692	Amphiprion_ocellaris
ENSDARG00000013457	mtrex	100	86.692	ENSAPEG00000019384	mtrex	100	86.692	Amphiprion_percula
ENSDARG00000013457	mtrex	100	86.680	ENSATEG00000015117	mtrex	100	86.680	Anabas_testudineus
ENSDARG00000013457	mtrex	94	87.832	ENSAPLG00000009694	MTREX	98	87.832	Anas_platyrhynchos
ENSDARG00000013457	mtrex	100	85.742	ENSACAG00000015200	MTREX	96	85.742	Anolis_carolinensis
ENSDARG00000013457	mtrex	100	84.623	ENSANAG00000023095	MTREX	100	84.909	Aotus_nancymaae
ENSDARG00000013457	mtrex	100	87.175	ENSACLG00000001921	mtrex	100	87.271	Astatotilapia_calliptera
ENSDARG00000013457	mtrex	95	90.061	ENSAMXG00000018751	mtrex	99	90.061	Astyanax_mexicanus
ENSDARG00000013457	mtrex	100	84.909	ENSBTAG00000010518	MTREX	100	85.100	Bos_taurus
ENSDARG00000013457	mtrex	91	54.189	WBGene00012342	mtr-4	91	54.189	Caenorhabditis_elegans
ENSDARG00000013457	mtrex	100	83.554	ENSCJAG00000001773	MTREX	100	83.837	Callithrix_jacchus
ENSDARG00000013457	mtrex	100	84.938	ENSCAFG00000006818	MTREX	100	84.938	Canis_familiaris
ENSDARG00000013457	mtrex	100	84.938	ENSCAFG00020024352	MTREX	100	84.938	Canis_lupus_dingo
ENSDARG00000013457	mtrex	100	84.652	ENSCHIG00000024413	MTREX	100	84.843	Capra_hircus
ENSDARG00000013457	mtrex	94	85.817	ENSTSYG00000007389	MTREX	100	85.817	Carlito_syrichta
ENSDARG00000013457	mtrex	98	63.798	ENSCAPG00000008696	MTREX	99	63.798	Cavia_aperea
ENSDARG00000013457	mtrex	100	84.432	ENSCPOG00000009797	MTREX	100	84.527	Cavia_porcellus
ENSDARG00000013457	mtrex	100	84.718	ENSCCAG00000014177	MTREX	100	84.909	Cebus_capucinus
ENSDARG00000013457	mtrex	100	84.909	ENSCATG00000042153	MTREX	100	85.005	Cercocebus_atys
ENSDARG00000013457	mtrex	100	84.527	ENSCLAG00000006622	MTREX	100	84.527	Chinchilla_lanigera
ENSDARG00000013457	mtrex	100	81.143	ENSCSAG00000016445	MTREX	100	81.238	Chlorocebus_sabaeus
ENSDARG00000013457	mtrex	69	97.222	ENSCHOG00000010936	-	70	97.222	Choloepus_hoffmanni
ENSDARG00000013457	mtrex	100	85.632	ENSCPBG00000026551	MTREX	94	86.180	Chrysemys_picta_bellii
ENSDARG00000013457	mtrex	99	66.924	ENSCING00000003239	-	99	66.539	Ciona_intestinalis
ENSDARG00000013457	mtrex	99	65.388	ENSCSAVG00000009304	-	100	69.957	Ciona_savignyi
ENSDARG00000013457	mtrex	100	84.909	ENSCANG00000035770	MTREX	100	84.909	Colobus_angolensis_palliatus
ENSDARG00000013457	mtrex	100	84.990	ENSCGRG00001024680	Mtrex	100	85.086	Cricetulus_griseus_chok1gshd
ENSDARG00000013457	mtrex	100	84.990	ENSCGRG00000000307	Mtrex	100	85.086	Cricetulus_griseus_crigri
ENSDARG00000013457	mtrex	100	85.507	ENSCSEG00000018621	mtrex	98	85.811	Cynoglossus_semilaevis
ENSDARG00000013457	mtrex	100	86.307	ENSCVAG00000004556	mtrex	100	86.500	Cyprinodon_variegatus
ENSDARG00000013457	mtrex	100	84.301	ENSDNOG00000015375	MTREX	100	84.301	Dasypus_novemcinctus
ENSDARG00000013457	mtrex	100	84.909	ENSDORG00000006782	Mtrex	100	85.005	Dipodomys_ordii
ENSDARG00000013457	mtrex	99	62.075	FBgn0001986	Mtr4	99	62.170	Drosophila_melanogaster
ENSDARG00000013457	mtrex	90	71.163	ENSETEG00000000727	MTREX	90	71.163	Echinops_telfairi
ENSDARG00000013457	mtrex	99	74.443	ENSEBUG00000012869	mtrex	99	74.443	Eptatretus_burgeri
ENSDARG00000013457	mtrex	100	84.527	ENSEASG00005013270	MTREX	100	84.718	Equus_asinus_asinus
ENSDARG00000013457	mtrex	100	84.623	ENSECAG00000023723	MTREX	100	91.628	Equus_caballus
ENSDARG00000013457	mtrex	98	76.385	ENSEEUG00000000527	MTREX	99	76.579	Erinaceus_europaeus
ENSDARG00000013457	mtrex	98	89.990	ENSELUG00000004898	mtrex	100	93.277	Esox_lucius
ENSDARG00000013457	mtrex	100	84.814	ENSFCAG00000010575	MTREX	100	84.814	Felis_catus
ENSDARG00000013457	mtrex	100	85.082	ENSFALG00000010850	MTREX	100	85.178	Ficedula_albicollis
ENSDARG00000013457	mtrex	100	84.785	ENSFDAG00000011199	MTREX	100	84.785	Fukomys_damarensis
ENSDARG00000013457	mtrex	100	85.728	ENSFHEG00000023014	mtrex	100	84.534	Fundulus_heteroclitus
ENSDARG00000013457	mtrex	100	83.510	ENSGMOG00000014702	mtrex	100	83.607	Gadus_morhua
ENSDARG00000013457	mtrex	100	86.197	ENSGALG00000014709	MTREX	86	86.197	Gallus_gallus
ENSDARG00000013457	mtrex	100	85.728	ENSGAFG00000012425	mtrex	100	85.921	Gambusia_affinis
ENSDARG00000013457	mtrex	100	81.853	ENSGACG00000016260	mtrex	96	86.942	Gasterosteus_aculeatus
ENSDARG00000013457	mtrex	100	85.249	ENSGAGG00000020036	MTREX	100	85.605	Gopherus_agassizii
ENSDARG00000013457	mtrex	100	84.681	ENSGGOG00000001867	MTREX	100	84.909	Gorilla_gorilla
ENSDARG00000013457	mtrex	100	87.175	ENSHBUG00000006229	mtrex	100	87.271	Haplochromis_burtoni
ENSDARG00000013457	mtrex	100	84.498	ENSHGLG00000019445	SKIV2L2	100	84.593	Heterocephalus_glaber_female
ENSDARG00000013457	mtrex	100	84.498	ENSHGLG00100011833	SKIV2L2	100	84.593	Heterocephalus_glaber_male
ENSDARG00000013457	mtrex	92	86.748	ENSHCOG00000019995	mtrex	100	86.748	Hippocampus_comes
ENSDARG00000013457	mtrex	100	89.392	ENSIPUG00000024348	skiv2l2	100	89.392	Ictalurus_punctatus
ENSDARG00000013457	mtrex	100	84.336	ENSSTOG00000010802	MTREX	100	84.623	Ictidomys_tridecemlineatus
ENSDARG00000013457	mtrex	100	81.190	ENSJJAG00000020975	Mtrex	100	81.286	Jaculus_jaculus
ENSDARG00000013457	mtrex	100	85.824	ENSKMAG00000012642	mtrex	100	86.017	Kryptolebias_marmoratus
ENSDARG00000013457	mtrex	100	86.031	ENSLBEG00000019367	mtrex	99	87.578	Labrus_bergylta
ENSDARG00000013457	mtrex	100	87.367	ENSLACG00000009075	MTREX	100	87.367	Latimeria_chalumnae
ENSDARG00000013457	mtrex	100	89.296	ENSLOCG00000010186	mtrex	100	89.296	Lepisosteus_oculatus
ENSDARG00000013457	mtrex	99	83.111	ENSLAFG00000010497	MTREX	100	83.206	Loxodonta_africana
ENSDARG00000013457	mtrex	100	84.909	ENSMFAG00000031610	MTREX	100	85.005	Macaca_fascicularis
ENSDARG00000013457	mtrex	100	83.886	ENSMMUG00000010379	MTREX	100	84.557	Macaca_mulatta
ENSDARG00000013457	mtrex	100	84.909	ENSMNEG00000032746	MTREX	100	85.005	Macaca_nemestrina
ENSDARG00000013457	mtrex	100	84.909	ENSMLEG00000041051	MTREX	100	85.005	Mandrillus_leucophaeus
ENSDARG00000013457	mtrex	100	85.300	ENSMAMG00000016753	mtrex	98	88.566	Mastacembelus_armatus
ENSDARG00000013457	mtrex	100	87.175	ENSMZEG00005000414	mtrex	100	87.271	Maylandia_zebra
ENSDARG00000013457	mtrex	95	63.636	ENSMGAG00000003980	MTREX	99	63.636	Meleagris_gallopavo
ENSDARG00000013457	mtrex	100	84.608	ENSMAUG00000010727	Mtrex	100	84.990	Mesocricetus_auratus
ENSDARG00000013457	mtrex	100	85.005	ENSMICG00000012779	MTREX	100	85.100	Microcebus_murinus
ENSDARG00000013457	mtrex	100	84.527	ENSMOCG00000019886	Mtrex	100	84.814	Microtus_ochrogaster
ENSDARG00000013457	mtrex	100	84.170	ENSMMOG00000002476	mtrex	100	84.170	Mola_mola
ENSDARG00000013457	mtrex	100	85.164	ENSMODG00000019494	MTREX	100	85.453	Monodelphis_domestica
ENSDARG00000013457	mtrex	92	84.378	ENSMALG00000002917	mtrex	98	84.378	Monopterus_albus
ENSDARG00000013457	mtrex	100	84.402	MGP_CAROLIEiJ_G0018896	Mtrex	100	84.689	Mus_caroli
ENSDARG00000013457	mtrex	100	84.402	ENSMUSG00000016018	Mtrex	100	84.689	Mus_musculus
ENSDARG00000013457	mtrex	100	84.593	MGP_PahariEiJ_G0015967	Mtrex	100	84.880	Mus_pahari
ENSDARG00000013457	mtrex	100	84.402	MGP_SPRETEiJ_G0019775	Mtrex	100	84.689	Mus_spretus
ENSDARG00000013457	mtrex	100	84.623	ENSMPUG00000007619	MTREX	100	85.033	Mustela_putorius_furo
ENSDARG00000013457	mtrex	100	84.256	ENSMLUG00000001152	MTREX	100	84.542	Myotis_lucifugus
ENSDARG00000013457	mtrex	100	84.814	ENSNGAG00000011938	Mtrex	100	85.100	Nannospalax_galili
ENSDARG00000013457	mtrex	100	87.271	ENSNBRG00000011293	mtrex	100	87.367	Neolamprologus_brichardi
ENSDARG00000013457	mtrex	100	80.817	ENSNLEG00000001494	MTREX	100	81.030	Nomascus_leucogenys
ENSDARG00000013457	mtrex	83	98.039	ENSMEUG00000006496	-	83	98.039	Notamacropus_eugenii
ENSDARG00000013457	mtrex	100	71.743	ENSOPRG00000008009	MTREX	100	71.839	Ochotona_princeps
ENSDARG00000013457	mtrex	100	84.241	ENSODEG00000017234	MTREX	100	84.336	Octodon_degus
ENSDARG00000013457	mtrex	100	87.078	ENSONIG00000007587	mtrex	100	87.175	Oreochromis_niloticus
ENSDARG00000013457	mtrex	50	84.302	ENSOANG00000004885	-	99	84.302	Ornithorhynchus_anatinus
ENSDARG00000013457	mtrex	100	85.072	ENSOCUG00000004463	MTREX	100	85.072	Oryctolagus_cuniculus
ENSDARG00000013457	mtrex	100	86.416	ENSORLG00000005443	mtrex	100	86.416	Oryzias_latipes
ENSDARG00000013457	mtrex	100	86.416	ENSORLG00020006329	mtrex	100	86.416	Oryzias_latipes_hni
ENSDARG00000013457	mtrex	100	86.416	ENSORLG00015012924	mtrex	100	86.416	Oryzias_latipes_hsok
ENSDARG00000013457	mtrex	100	86.429	ENSOMEG00000008825	mtrex	100	86.429	Oryzias_melastigma
ENSDARG00000013457	mtrex	100	84.909	ENSOGAG00000002886	MTREX	100	85.005	Otolemur_garnettii
ENSDARG00000013457	mtrex	100	84.411	ENSOARG00000007764	MTREX	100	84.601	Ovis_aries
ENSDARG00000013457	mtrex	100	84.681	ENSPPAG00000039291	MTREX	100	84.909	Pan_paniscus
ENSDARG00000013457	mtrex	100	84.814	ENSPPRG00000019701	MTREX	100	84.814	Panthera_pardus
ENSDARG00000013457	mtrex	100	83.381	ENSPTIG00000009313	MTREX	100	83.381	Panthera_tigris_altaica
ENSDARG00000013457	mtrex	100	84.681	ENSPTRG00000016878	MTREX	100	84.909	Pan_troglodytes
ENSDARG00000013457	mtrex	100	85.005	ENSPANG00000009697	MTREX	100	85.100	Papio_anubis
ENSDARG00000013457	mtrex	100	88.792	ENSPKIG00000020833	mtrex	100	88.792	Paramormyrops_kingsleyae
ENSDARG00000013457	mtrex	100	85.549	ENSPSIG00000012150	MTREX	100	85.962	Pelodiscus_sinensis
ENSDARG00000013457	mtrex	100	84.749	ENSPMGG00000002582	mtrex	100	84.749	Periophthalmus_magnuspinnatus
ENSDARG00000013457	mtrex	95	67.037	ENSPMAG00000009668	mtrex	100	67.037	Petromyzon_marinus
ENSDARG00000013457	mtrex	92	89.601	ENSPCIG00000024730	MTREX	100	89.601	Phascolarctos_cinereus
ENSDARG00000013457	mtrex	76	88.579	ENSPFOG00000003141	mtrex	100	88.706	Poecilia_formosa
ENSDARG00000013457	mtrex	100	86.114	ENSPLAG00000021311	mtrex	100	86.210	Poecilia_latipinna
ENSDARG00000013457	mtrex	92	88.075	ENSPMEG00000010597	mtrex	99	88.192	Poecilia_mexicana
ENSDARG00000013457	mtrex	100	85.921	ENSPREG00000003089	mtrex	100	86.017	Poecilia_reticulata
ENSDARG00000013457	mtrex	98	84.511	ENSPPYG00000015469	MTREX	98	84.742	Pongo_abelii
ENSDARG00000013457	mtrex	94	75.349	ENSPCAG00000013120	MTREX	94	75.349	Procavia_capensis
ENSDARG00000013457	mtrex	99	79.350	ENSPCOG00000018092	MTREX	100	79.665	Propithecus_coquereli
ENSDARG00000013457	mtrex	100	84.747	ENSPVAG00000002445	MTREX	100	84.938	Pteropus_vampyrus
ENSDARG00000013457	mtrex	100	87.078	ENSPNYG00000006164	mtrex	100	87.175	Pundamilia_nyererei
ENSDARG00000013457	mtrex	100	91.803	ENSPNAG00000008794	mtrex	100	91.803	Pygocentrus_nattereri
ENSDARG00000013457	mtrex	98	84.159	ENSRNOG00000010125	Mtrex	96	84.451	Rattus_norvegicus
ENSDARG00000013457	mtrex	100	83.286	ENSRBIG00000034930	MTREX	100	83.381	Rhinopithecus_bieti
ENSDARG00000013457	mtrex	100	84.909	ENSRROG00000039895	MTREX	100	85.005	Rhinopithecus_roxellana
ENSDARG00000013457	mtrex	90	55.649	YJL050W	MTR4	99	51.306	Saccharomyces_cerevisiae
ENSDARG00000013457	mtrex	100	84.623	ENSSBOG00000026693	MTREX	100	84.909	Saimiri_boliviensis_boliviensis
ENSDARG00000013457	mtrex	96	87.161	ENSSHAG00000004600	MTREX	99	87.161	Sarcophilus_harrisii
ENSDARG00000013457	mtrex	100	88.696	ENSSFOG00015014355	skiv2l2	100	88.696	Scleropages_formosus
ENSDARG00000013457	mtrex	100	86.114	ENSSMAG00000007572	mtrex	100	86.114	Scophthalmus_maximus
ENSDARG00000013457	mtrex	100	86.885	ENSSDUG00000023789	mtrex	100	86.885	Seriola_dumerili
ENSDARG00000013457	mtrex	100	86.789	ENSSLDG00000006301	mtrex	100	86.789	Seriola_lalandi_dorsalis
ENSDARG00000013457	mtrex	100	83.286	ENSSARG00000008387	MTREX	100	83.572	Sorex_araneus
ENSDARG00000013457	mtrex	89	86.899	ENSSPUG00000007071	MTREX	96	86.899	Sphenodon_punctatus
ENSDARG00000013457	mtrex	100	84.043	ENSSPAG00000011319	mtrex	100	84.139	Stegastes_partitus
ENSDARG00000013457	mtrex	100	84.938	ENSSSCG00000016911	MTREX	100	85.129	Sus_scrofa
ENSDARG00000013457	mtrex	100	84.519	ENSTGUG00000002480	MTREX	100	84.519	Taeniopygia_guttata
ENSDARG00000013457	mtrex	100	85.439	ENSTRUG00000014571	mtrex	100	85.439	Takifugu_rubripes
ENSDARG00000013457	mtrex	100	70.010	ENSTBEG00000007769	MTREX	100	70.392	Tupaia_belangeri
ENSDARG00000013457	mtrex	100	84.814	ENSTTRG00000008678	MTREX	100	85.005	Tursiops_truncatus
ENSDARG00000013457	mtrex	100	85.033	ENSUAMG00000023061	MTREX	100	85.129	Ursus_americanus
ENSDARG00000013457	mtrex	100	84.712	ENSUMAG00000009373	MTREX	99	89.943	Ursus_maritimus
ENSDARG00000013457	mtrex	100	75.405	ENSVPAG00000011174	MTREX	100	75.405	Vicugna_pacos
ENSDARG00000013457	mtrex	100	85.033	ENSVVUG00000021337	MTREX	100	85.033	Vulpes_vulpes
ENSDARG00000013457	mtrex	100	86.583	ENSXETG00000032798	MTREX	100	86.583	Xenopus_tropicalis
ENSDARG00000013457	mtrex	100	86.017	ENSXMAG00000004799	mtrex	100	86.210	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000460	maturation of 5.8S rRNA	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003724	RNA helicase activity	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0006401	RNA catabolic process	-	IEA	Process
GO:0031101	fin regeneration	17542649.	IMP	Process
GO:0051781	positive regulation of cell division	17542649.	IMP	Process