EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000013729 (Gene tree)
Gene ID: 406775
Gene Symbol: srsf6a
Alias: fa12h12|sfrs6a|wu:fa12h12|wu:fa13e06|zgc:63770
Full Name: serine/arginine-rich splicing factor 6a
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 11527 bases
Position: chr23:4260458-4271984
Accession: ZDB-GENE-040426-2824
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000094522	RRM_1	PF00076.22	6.8e-31	1	2
ENSDARP00000094522	RRM_1	PF00076.22	6.8e-31	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000103747	-	1561	XM_005161922	ENSDARP00000094522	347 (aa)	XP_005161979	F1QNA5

Gene Model

Click here to download ENSDARG00000013729's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG
dre05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000013729's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000013729	srsf6a	55	32.020	ENSDARG00000035325	srsf7a	81	42.373

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000013729	srsf6a	78	62.162	ENSACIG00000020091	-	95	71.654	Amphilophus_citrinellus
ENSDARG00000013729	srsf6a	90	58.235	ENSACIG00000023658	-	55	79.775	Amphilophus_citrinellus
ENSDARG00000013729	srsf6a	55	68.519	ENSATEG00000007255	-	71	75.956	Anabas_testudineus
ENSDARG00000013729	srsf6a	59	81.250	ENSAMXG00000042692	-	96	71.111	Astyanax_mexicanus
ENSDARG00000013729	srsf6a	92	59.259	ENSFHEG00000023065	srsf6a	54	79.121	Fundulus_heteroclitus
ENSDARG00000013729	srsf6a	92	61.905	ENSGACG00000006084	srsf6a	53	77.297	Gasterosteus_aculeatus
ENSDARG00000013729	srsf6a	56	75.893	ENSHBUG00000006386	-	57	81.006	Haplochromis_burtoni
ENSDARG00000013729	srsf6a	90	60.116	ENSLACG00000005466	SRSF6	54	79.781	Latimeria_chalumnae
ENSDARG00000013729	srsf6a	56	75.771	ENSMZEG00005008032	-	57	81.006	Maylandia_zebra
ENSDARG00000013729	srsf6a	68	72.692	ENSONIG00000020247	-	53	80.556	Oreochromis_niloticus
ENSDARG00000013729	srsf6a	93	72.485	ENSPKIG00000018463	-	80	79.012	Paramormyrops_kingsleyae
ENSDARG00000013729	srsf6a	91	51.567	ENSPLAG00000009243	srsf6a	80	70.079	Poecilia_latipinna
ENSDARG00000013729	srsf6a	93	67.218	ENSSFOG00015019681	-	53	78.238	Scleropages_formosus
ENSDARG00000013729	srsf6a	81	68.750	ENSSPAG00000002362	srsf6a	66	77.128	Stegastes_partitus
ENSDARG00000013729	srsf6a	91	62.717	ENSTNIG00000001692	srsf6a	56	78.378	Tetraodon_nigroviridis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component