EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000013800 (Gene tree)
Gene ID: 415171
Gene Symbol: snrpd3
Alias: zgc:86943
Full Name: small nuclear ribonucleoprotein D3 polypeptide
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 2701 bases
Position: chr8:30742898-30745598
Accession: ZDB-GENE-040625-55
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000011226	LSM	PF01423.22	3.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000018475	-	658	XM_021478237	ENSDARP00000011226	127 (aa)	XP_021333912	B0V1I0

Gene Model

Click here to download ENSDARG00000013800's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000013800's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000013800	snrpd3	65	31.325	ENSDARG00000011648	snrpd1	71	33.803
ENSDARG00000013800	snrpd3	100	100.000	ENSDARG00000042452	p2rx4b	100	100.000
ENSDARG00000013800	snrpd3	100	95.312	ENSDARG00000076283	snrpd3l	100	95.312
ENSDARG00000013800	snrpd3	86	31.818	ENSDARG00000023852	lsm4	73	31.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000013800	snrpd3	100	91.339	ENSG00000100028	SNRPD3	98	98.361	Homo_sapiens
ENSDARG00000013800	snrpd3	100	95.276	ENSAPOG00000007512	snrpd3l	100	95.276	Acanthochromis_polyacanthus
ENSDARG00000013800	snrpd3	100	91.339	ENSAMEG00000013935	SNRPD3	100	90.551	Ailuropoda_melanoleuca
ENSDARG00000013800	snrpd3	100	95.276	ENSACIG00000008871	snrpd3l	100	95.276	Amphilophus_citrinellus
ENSDARG00000013800	snrpd3	100	95.276	ENSAOCG00000016743	snrpd3l	100	95.276	Amphiprion_ocellaris
ENSDARG00000013800	snrpd3	83	96.226	ENSAOCG00000016759	-	98	96.226	Amphiprion_ocellaris
ENSDARG00000013800	snrpd3	100	95.276	ENSAOCG00000022442	-	100	95.276	Amphiprion_ocellaris
ENSDARG00000013800	snrpd3	100	95.276	ENSAOCG00000008497	SNRPD3	100	95.276	Amphiprion_ocellaris
ENSDARG00000013800	snrpd3	100	95.276	ENSAPEG00000006273	snrpd3l	100	95.276	Amphiprion_percula
ENSDARG00000013800	snrpd3	83	96.226	ENSAPEG00000006260	-	98	96.226	Amphiprion_percula
ENSDARG00000013800	snrpd3	100	95.276	ENSATEG00000020556	snrpd3l	91	95.276	Anabas_testudineus
ENSDARG00000013800	snrpd3	100	91.339	ENSAPLG00000008670	SNRPD3	100	90.551	Anas_platyrhynchos
ENSDARG00000013800	snrpd3	100	91.339	ENSANAG00000026106	SNRPD3	100	90.551	Aotus_nancymaae
ENSDARG00000013800	snrpd3	100	95.276	ENSACLG00000021295	snrpd3l	100	95.276	Astatotilapia_calliptera
ENSDARG00000013800	snrpd3	100	95.312	ENSAMXG00000038984	snrpd3l	100	95.312	Astyanax_mexicanus
ENSDARG00000013800	snrpd3	100	94.488	ENSBTAG00000021262	SNRPD3	100	90.551	Bos_taurus
ENSDARG00000013800	snrpd3	90	64.348	WBGene00004914	snr-1	63	75.294	Caenorhabditis_elegans
ENSDARG00000013800	snrpd3	100	91.339	ENSCJAG00000009630	SNRPD3	100	90.551	Callithrix_jacchus
ENSDARG00000013800	snrpd3	100	90.551	ENSCAFG00000017258	-	100	89.764	Canis_familiaris
ENSDARG00000013800	snrpd3	100	91.339	ENSCAFG00000013864	-	100	90.551	Canis_familiaris
ENSDARG00000013800	snrpd3	100	91.339	ENSCAFG00020007165	-	100	90.551	Canis_lupus_dingo
ENSDARG00000013800	snrpd3	100	91.339	ENSCHIG00000000057	SNRPD3	100	90.551	Capra_hircus
ENSDARG00000013800	snrpd3	100	91.339	ENSTSYG00000007649	SNRPD3	100	90.551	Carlito_syrichta
ENSDARG00000013800	snrpd3	100	91.339	ENSCAPG00000016432	-	100	90.551	Cavia_aperea
ENSDARG00000013800	snrpd3	100	91.339	ENSCPOG00000033102	-	100	90.551	Cavia_porcellus
ENSDARG00000013800	snrpd3	100	91.339	ENSCCAG00000035006	SNRPD3	100	90.551	Cebus_capucinus
ENSDARG00000013800	snrpd3	100	91.339	ENSCATG00000038878	SNRPD3	100	90.551	Cercocebus_atys
ENSDARG00000013800	snrpd3	100	91.339	ENSCLAG00000011403	SNRPD3	100	90.551	Chinchilla_lanigera
ENSDARG00000013800	snrpd3	100	91.339	ENSCSAG00000010694	SNRPD3	100	90.551	Chlorocebus_sabaeus
ENSDARG00000013800	snrpd3	100	91.339	ENSCPBG00000002065	SNRPD3	100	90.551	Chrysemys_picta_bellii
ENSDARG00000013800	snrpd3	84	78.505	ENSCSAVG00000004708	-	80	77.570	Ciona_savignyi
ENSDARG00000013800	snrpd3	100	91.339	ENSCANG00000032106	SNRPD3	100	90.551	Colobus_angolensis_palliatus
ENSDARG00000013800	snrpd3	100	91.339	ENSCGRG00001021990	Snrpd3	100	90.551	Cricetulus_griseus_chok1gshd
ENSDARG00000013800	snrpd3	100	91.339	ENSCGRG00000004280	Snrpd3	100	90.551	Cricetulus_griseus_crigri
ENSDARG00000013800	snrpd3	100	94.488	ENSCVAG00000001276	snrpd3l	100	94.488	Cyprinodon_variegatus
ENSDARG00000013800	snrpd3	100	91.339	ENSDNOG00000047424	-	100	90.551	Dasypus_novemcinctus
ENSDARG00000013800	snrpd3	100	84.615	ENSDNOG00000018004	-	100	82.308	Dasypus_novemcinctus
ENSDARG00000013800	snrpd3	97	73.171	ENSDNOG00000042638	-	100	70.732	Dasypus_novemcinctus
ENSDARG00000013800	snrpd3	100	79.528	ENSDORG00000027706	-	100	77.165	Dipodomys_ordii
ENSDARG00000013800	snrpd3	100	66.929	ENSDORG00000027169	-	100	66.142	Dipodomys_ordii
ENSDARG00000013800	snrpd3	87	83.784	ENSDORG00000002800	-	100	82.883	Dipodomys_ordii
ENSDARG00000013800	snrpd3	83	83.019	FBgn0023167	SmD3	71	82.243	Drosophila_melanogaster
ENSDARG00000013800	snrpd3	100	91.339	ENSEASG00005000273	SNRPD3	100	90.551	Equus_asinus_asinus
ENSDARG00000013800	snrpd3	100	91.339	ENSECAG00000023316	SNRPD3	100	90.551	Equus_caballus
ENSDARG00000013800	snrpd3	100	88.976	ENSEEUG00000015518	SNRPD3	100	89.764	Erinaceus_europaeus
ENSDARG00000013800	snrpd3	100	95.276	ENSELUG00000010092	snrpd3l	100	95.276	Esox_lucius
ENSDARG00000013800	snrpd3	100	96.063	ENSELUG00000001854	snrpd3	100	96.063	Esox_lucius
ENSDARG00000013800	snrpd3	100	91.339	ENSFCAG00000001512	SNRPD3	100	90.551	Felis_catus
ENSDARG00000013800	snrpd3	100	91.339	ENSFALG00000007303	SNRPD3	100	90.551	Ficedula_albicollis
ENSDARG00000013800	snrpd3	100	91.339	ENSFDAG00000010772	SNRPD3	100	90.551	Fukomys_damarensis
ENSDARG00000013800	snrpd3	100	95.276	ENSFHEG00000010754	snrpd3l	100	95.276	Fundulus_heteroclitus
ENSDARG00000013800	snrpd3	100	94.531	ENSGMOG00000008469	snrpd3l	100	94.531	Gadus_morhua
ENSDARG00000013800	snrpd3	100	91.339	ENSGALG00000006596	SNRPD3	100	90.551	Gallus_gallus
ENSDARG00000013800	snrpd3	83	96.226	ENSGAFG00000006661	snrpd3l	82	96.226	Gambusia_affinis
ENSDARG00000013800	snrpd3	100	94.531	ENSGACG00000017533	snrpd3l	100	94.531	Gasterosteus_aculeatus
ENSDARG00000013800	snrpd3	100	91.339	ENSGAGG00000023325	SNRPD3	100	90.551	Gopherus_agassizii
ENSDARG00000013800	snrpd3	100	91.339	ENSGGOG00000015640	SNRPD3	100	90.551	Gorilla_gorilla
ENSDARG00000013800	snrpd3	100	95.276	ENSHBUG00000001332	snrpd3l	100	95.276	Haplochromis_burtoni
ENSDARG00000013800	snrpd3	100	91.339	ENSHGLG00000016496	SNRPD3	100	90.551	Heterocephalus_glaber_female
ENSDARG00000013800	snrpd3	99	88.095	ENSHGLG00000009844	-	99	87.302	Heterocephalus_glaber_female
ENSDARG00000013800	snrpd3	100	91.339	ENSHGLG00100019304	SNRPD3	100	90.551	Heterocephalus_glaber_male
ENSDARG00000013800	snrpd3	99	88.095	ENSHGLG00100011326	-	99	87.302	Heterocephalus_glaber_male
ENSDARG00000013800	snrpd3	100	95.276	ENSHCOG00000014396	snrpd3l	100	95.276	Hippocampus_comes
ENSDARG00000013800	snrpd3	100	95.312	ENSIPUG00000003083	snrpd3	100	95.312	Ictalurus_punctatus
ENSDARG00000013800	snrpd3	100	91.339	ENSSTOG00000025674	SNRPD3	100	90.551	Ictidomys_tridecemlineatus
ENSDARG00000013800	snrpd3	100	91.339	ENSJJAG00000013303	Snrpd3	100	90.551	Jaculus_jaculus
ENSDARG00000013800	snrpd3	100	95.276	ENSKMAG00000012493	snrpd3l	100	95.276	Kryptolebias_marmoratus
ENSDARG00000013800	snrpd3	100	95.276	ENSLBEG00000003202	snrpd3l	100	95.276	Labrus_bergylta
ENSDARG00000013800	snrpd3	100	90.551	ENSLACG00000015192	SNRPD3	100	89.764	Latimeria_chalumnae
ENSDARG00000013800	snrpd3	100	95.276	ENSLOCG00000006978	snrpd3	100	95.276	Lepisosteus_oculatus
ENSDARG00000013800	snrpd3	100	91.339	ENSLAFG00000028180	SNRPD3	100	90.551	Loxodonta_africana
ENSDARG00000013800	snrpd3	100	91.339	ENSMFAG00000033628	SNRPD3	100	90.551	Macaca_fascicularis
ENSDARG00000013800	snrpd3	100	91.339	ENSMMUG00000000264	SNRPD3	100	90.551	Macaca_mulatta
ENSDARG00000013800	snrpd3	100	91.339	ENSMNEG00000020857	SNRPD3	100	90.551	Macaca_nemestrina
ENSDARG00000013800	snrpd3	100	91.339	ENSMLEG00000037548	SNRPD3	100	90.551	Mandrillus_leucophaeus
ENSDARG00000013800	snrpd3	100	95.276	ENSMZEG00005017664	snrpd3l	100	95.276	Maylandia_zebra
ENSDARG00000013800	snrpd3	100	91.339	ENSMAUG00000021393	Snrpd3	100	90.551	Mesocricetus_auratus
ENSDARG00000013800	snrpd3	100	91.339	ENSMICG00000034782	SNRPD3	100	90.551	Microcebus_murinus
ENSDARG00000013800	snrpd3	100	91.339	ENSMOCG00000009361	Snrpd3	100	90.551	Microtus_ochrogaster
ENSDARG00000013800	snrpd3	83	96.226	ENSMMOG00000020985	snrpd3l	67	96.226	Mola_mola
ENSDARG00000013800	snrpd3	100	91.339	ENSMODG00000004024	SNRPD3	100	90.551	Monodelphis_domestica
ENSDARG00000013800	snrpd3	100	95.276	ENSMALG00000013334	snrpd3l	100	95.276	Monopterus_albus
ENSDARG00000013800	snrpd3	100	91.339	MGP_CAROLIEiJ_G0015441	Snrpd3	100	90.551	Mus_caroli
ENSDARG00000013800	snrpd3	100	91.339	ENSMUSG00000020180	Snrpd3	100	90.551	Mus_musculus
ENSDARG00000013800	snrpd3	100	91.339	MGP_PahariEiJ_G0030857	Snrpd3	100	90.551	Mus_pahari
ENSDARG00000013800	snrpd3	100	91.339	MGP_SPRETEiJ_G0016254	Snrpd3	100	90.551	Mus_spretus
ENSDARG00000013800	snrpd3	100	91.339	ENSMPUG00000002889	SNRPD3	100	90.551	Mustela_putorius_furo
ENSDARG00000013800	snrpd3	100	91.339	ENSMLUG00000009838	SNRPD3	100	90.551	Myotis_lucifugus
ENSDARG00000013800	snrpd3	100	91.339	ENSNGAG00000010328	Snrpd3	100	90.551	Nannospalax_galili
ENSDARG00000013800	snrpd3	100	95.276	ENSNBRG00000020307	snrpd3l	100	95.276	Neolamprologus_brichardi
ENSDARG00000013800	snrpd3	100	91.339	ENSNLEG00000035757	SNRPD3	100	90.551	Nomascus_leucogenys
ENSDARG00000013800	snrpd3	100	91.339	ENSMEUG00000003772	SNRPD3	100	90.551	Notamacropus_eugenii
ENSDARG00000013800	snrpd3	100	91.339	ENSOPRG00000005763	SNRPD3	100	90.551	Ochotona_princeps
ENSDARG00000013800	snrpd3	100	91.339	ENSODEG00000008064	-	100	90.551	Octodon_degus
ENSDARG00000013800	snrpd3	100	90.551	ENSODEG00000019354	-	100	89.764	Octodon_degus
ENSDARG00000013800	snrpd3	100	88.189	ENSODEG00000020162	-	100	87.402	Octodon_degus
ENSDARG00000013800	snrpd3	100	95.276	ENSONIG00000003828	snrpd3l	100	95.276	Oreochromis_niloticus
ENSDARG00000013800	snrpd3	100	91.339	ENSOANG00000002463	SNRPD3	100	90.551	Ornithorhynchus_anatinus
ENSDARG00000013800	snrpd3	100	91.339	ENSOCUG00000004845	SNRPD3	100	90.551	Oryctolagus_cuniculus
ENSDARG00000013800	snrpd3	100	95.276	ENSORLG00000010586	snrpd3l	100	95.276	Oryzias_latipes
ENSDARG00000013800	snrpd3	100	95.276	ENSORLG00020011769	snrpd3l	100	95.276	Oryzias_latipes_hni
ENSDARG00000013800	snrpd3	100	95.276	ENSORLG00015022940	snrpd3l	100	95.276	Oryzias_latipes_hsok
ENSDARG00000013800	snrpd3	100	95.276	ENSOMEG00000022734	snrpd3l	100	95.276	Oryzias_melastigma
ENSDARG00000013800	snrpd3	100	91.339	ENSOGAG00000012708	SNRPD3	100	90.551	Otolemur_garnettii
ENSDARG00000013800	snrpd3	100	91.339	ENSOARG00000013984	SNRPD3	100	90.551	Ovis_aries
ENSDARG00000013800	snrpd3	100	91.339	ENSPPAG00000039191	SNRPD3	100	90.551	Pan_paniscus
ENSDARG00000013800	snrpd3	100	91.339	ENSPPRG00000001470	SNRPD3	100	90.551	Panthera_pardus
ENSDARG00000013800	snrpd3	100	91.339	ENSPTIG00000016610	SNRPD3	100	90.551	Panthera_tigris_altaica
ENSDARG00000013800	snrpd3	100	91.339	ENSPTRG00000014176	SNRPD3	100	90.551	Pan_troglodytes
ENSDARG00000013800	snrpd3	100	91.339	ENSPANG00000009279	SNRPD3	100	90.551	Papio_anubis
ENSDARG00000013800	snrpd3	100	95.276	ENSPKIG00000006412	snrpd3l	100	95.276	Paramormyrops_kingsleyae
ENSDARG00000013800	snrpd3	100	89.764	ENSPSIG00000010022	-	100	88.976	Pelodiscus_sinensis
ENSDARG00000013800	snrpd3	85	95.370	ENSPMGG00000004486	snrpd3l	88	95.370	Periophthalmus_magnuspinnatus
ENSDARG00000013800	snrpd3	100	94.488	ENSPCIG00000010910	SNRPD3	84	90.551	Phascolarctos_cinereus
ENSDARG00000013800	snrpd3	100	95.276	ENSPFOG00000019673	snrpd3l	100	95.276	Poecilia_formosa
ENSDARG00000013800	snrpd3	100	95.276	ENSPLAG00000023249	snrpd3l	100	95.276	Poecilia_latipinna
ENSDARG00000013800	snrpd3	100	95.276	ENSPMEG00000008482	snrpd3l	100	95.276	Poecilia_mexicana
ENSDARG00000013800	snrpd3	83	96.226	ENSPREG00000007532	snrpd3l	87	96.226	Poecilia_reticulata
ENSDARG00000013800	snrpd3	100	91.339	ENSPPYG00000011648	SNRPD3	100	90.551	Pongo_abelii
ENSDARG00000013800	snrpd3	100	91.339	ENSPCAG00000002065	SNRPD3	100	90.551	Procavia_capensis
ENSDARG00000013800	snrpd3	100	91.339	ENSPCOG00000011842	SNRPD3	100	90.551	Propithecus_coquereli
ENSDARG00000013800	snrpd3	100	90.551	ENSPVAG00000011405	SNRPD3	100	89.764	Pteropus_vampyrus
ENSDARG00000013800	snrpd3	100	95.276	ENSPNYG00000013344	snrpd3l	100	95.276	Pundamilia_nyererei
ENSDARG00000013800	snrpd3	100	97.638	ENSPNAG00000010547	snrpd3	100	97.638	Pygocentrus_nattereri
ENSDARG00000013800	snrpd3	100	87.500	ENSPNAG00000008683	snrpd3l	100	92.969	Pygocentrus_nattereri
ENSDARG00000013800	snrpd3	100	91.339	ENSRNOG00000050410	Snrpd3	100	90.551	Rattus_norvegicus
ENSDARG00000013800	snrpd3	100	91.339	ENSRBIG00000029017	SNRPD3	100	90.551	Rhinopithecus_bieti
ENSDARG00000013800	snrpd3	100	91.339	ENSRROG00000031152	SNRPD3	100	90.551	Rhinopithecus_roxellana
ENSDARG00000013800	snrpd3	64	50.617	YLR147C	SMD3	80	50.617	Saccharomyces_cerevisiae
ENSDARG00000013800	snrpd3	100	92.913	ENSSFOG00015014180	snrpd3l	100	92.913	Scleropages_formosus
ENSDARG00000013800	snrpd3	100	95.276	ENSSFOG00015007002	snrpd3l	100	95.276	Scleropages_formosus
ENSDARG00000013800	snrpd3	100	95.276	ENSSMAG00000019307	snrpd3l	100	95.276	Scophthalmus_maximus
ENSDARG00000013800	snrpd3	100	95.276	ENSSDUG00000006870	snrpd3l	100	95.276	Seriola_dumerili
ENSDARG00000013800	snrpd3	100	95.276	ENSSLDG00000022664	snrpd3l	100	95.276	Seriola_lalandi_dorsalis
ENSDARG00000013800	snrpd3	100	91.339	ENSSARG00000002357	SNRPD3	100	90.551	Sorex_araneus
ENSDARG00000013800	snrpd3	100	90.551	ENSSPUG00000014285	SNRPD3	100	89.764	Sphenodon_punctatus
ENSDARG00000013800	snrpd3	100	91.339	ENSSSCG00000010058	SNRPD3	100	90.551	Sus_scrofa
ENSDARG00000013800	snrpd3	100	91.339	ENSTGUG00000010079	SNRPD3	100	90.551	Taeniopygia_guttata
ENSDARG00000013800	snrpd3	83	96.226	ENSTRUG00000023976	snrpd3l	90	96.226	Takifugu_rubripes
ENSDARG00000013800	snrpd3	100	95.276	ENSTNIG00000005323	snrpd3l	100	95.276	Tetraodon_nigroviridis
ENSDARG00000013800	snrpd3	100	91.339	ENSTBEG00000014334	SNRPD3	100	90.551	Tupaia_belangeri
ENSDARG00000013800	snrpd3	100	91.339	ENSTTRG00000006022	SNRPD3	100	90.551	Tursiops_truncatus
ENSDARG00000013800	snrpd3	100	91.339	ENSUAMG00000010767	SNRPD3	100	90.551	Ursus_americanus
ENSDARG00000013800	snrpd3	100	91.339	ENSUMAG00000001670	SNRPD3	100	90.551	Ursus_maritimus
ENSDARG00000013800	snrpd3	100	91.339	ENSVPAG00000000241	SNRPD3	100	90.551	Vicugna_pacos
ENSDARG00000013800	snrpd3	83	96.226	ENSVVUG00000019340	SNRPD3	53	96.226	Vulpes_vulpes
ENSDARG00000013800	snrpd3	100	80.620	ENSXETG00000024918	snrpd3	65	97.590	Xenopus_tropicalis
ENSDARG00000013800	snrpd3	100	95.276	ENSXCOG00000004795	snrpd3l	100	95.276	Xiphophorus_couchianus
ENSDARG00000013800	snrpd3	100	95.276	ENSXMAG00000001133	snrpd3l	100	95.276	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000243	commitment complex	21873635.	IBA	Component
GO:0000387	spliceosomal snRNP assembly	21873635.	IBA	Process
GO:0000387	spliceosomal snRNP assembly	-	IEA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005687	U4 snRNP	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0019012	virion	-	IEA	Component
GO:0019013	viral nucleocapsid	-	IEA	Component
GO:0034715	pICln-Sm protein complex	21873635.	IBA	Component
GO:0034719	SMN-Sm protein complex	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component