EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000013997 (Gene tree)
Gene ID: -
Gene Symbol: ern1
Alias: sb:eu1005|zgc:109932
Full Name: endoplasmic reticulum to nucleus signaling 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 60982 bases
Position: chr3:55420176-55481157
Accession: ZDB-GENE-050522-431
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000018218	Ribonuc_2-5A	PF06479.12	1.4e-37	1	1
ENSDARP00000128610	Ribonuc_2-5A	PF06479.12	2.6e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000153774	-	2996	-	ENSDARP00000128610	960 (aa)	-	X1WEF9
ENSDART00000014182	-	8143	-	ENSDARP00000018218	1031 (aa)	-	F1QYL2
ENSDART00000154685	-	344	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000013997's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000013997's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000013997	ern1	88	69.554	ENSDARG00000058475	ern2	95	69.704

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000013997	ern1	100	81.865	ENSAPOG00000009999	ern1	90	81.649	Acanthochromis_polyacanthus
ENSDARG00000013997	ern1	100	82.195	ENSACIG00000021716	ern1	90	81.237	Amphilophus_citrinellus
ENSDARG00000013997	ern1	100	82.213	ENSAOCG00000012309	ern1	90	81.996	Amphiprion_ocellaris
ENSDARG00000013997	ern1	100	81.696	ENSAPEG00000011263	ern1	99	81.925	Amphiprion_percula
ENSDARG00000013997	ern1	100	82.402	ENSATEG00000024468	ern1	90	81.523	Anabas_testudineus
ENSDARG00000013997	ern1	100	82.627	ENSACLG00000027919	ern1	89	82.627	Astatotilapia_calliptera
ENSDARG00000013997	ern1	100	84.599	ENSAMXG00000000944	ern1	94	83.435	Astyanax_mexicanus
ENSDARG00000013997	ern1	99	81.075	ENSCSEG00000014500	ern1	94	81.302	Cynoglossus_semilaevis
ENSDARG00000013997	ern1	97	81.635	ENSCVAG00000002988	ern1	93	79.856	Cyprinodon_variegatus
ENSDARG00000013997	ern1	100	77.472	ENSELUG00000005957	ern1	94	77.305	Esox_lucius
ENSDARG00000013997	ern1	100	81.179	ENSFHEG00000005578	ern1	92	80.508	Fundulus_heteroclitus
ENSDARG00000013997	ern1	97	81.548	ENSGMOG00000011232	ern1	100	81.568	Gadus_morhua
ENSDARG00000013997	ern1	100	81.328	ENSGAFG00000020231	ern1	94	79.810	Gambusia_affinis
ENSDARG00000013997	ern1	97	82.291	ENSGACG00000011700	ern1	97	82.309	Gasterosteus_aculeatus
ENSDARG00000013997	ern1	99	81.988	ENSHBUG00000012581	ern1	89	81.725	Haplochromis_burtoni
ENSDARG00000013997	ern1	100	80.725	ENSHCOG00000016199	ern1	91	80.745	Hippocampus_comes
ENSDARG00000013997	ern1	100	85.120	ENSIPUG00000011083	ern1	93	85.109	Ictalurus_punctatus
ENSDARG00000013997	ern1	100	80.333	ENSKMAG00000019499	ern1	90	80.021	Kryptolebias_marmoratus
ENSDARG00000013997	ern1	97	79.704	ENSLBEG00000025907	ern1	88	79.704	Labrus_bergylta
ENSDARG00000013997	ern1	100	82.834	ENSMAMG00000023439	ern1	90	82.627	Mastacembelus_armatus
ENSDARG00000013997	ern1	100	82.627	ENSMZEG00005003221	ern1	89	82.627	Maylandia_zebra
ENSDARG00000013997	ern1	100	80.745	ENSMMOG00000007650	ern1	97	80.513	Mola_mola
ENSDARG00000013997	ern1	100	81.386	ENSMALG00000017775	ern1	89	81.128	Monopterus_albus
ENSDARG00000013997	ern1	99	82.195	ENSNBRG00000002179	ern1	90	81.930	Neolamprologus_brichardi
ENSDARG00000013997	ern1	98	82.019	ENSONIG00000017169	ern1	99	81.733	Oreochromis_niloticus
ENSDARG00000013997	ern1	100	81.101	ENSORLG00000008940	ern1	90	80.825	Oryzias_latipes
ENSDARG00000013997	ern1	100	81.205	ENSORLG00020018387	ern1	90	80.928	Oryzias_latipes_hni
ENSDARG00000013997	ern1	100	80.893	ENSORLG00015007946	ern1	90	80.619	Oryzias_latipes_hsok
ENSDARG00000013997	ern1	100	81.516	ENSOMEG00000011741	ern1	90	81.237	Oryzias_melastigma
ENSDARG00000013997	ern1	100	80.229	ENSPKIG00000005593	ern1	98	80.229	Paramormyrops_kingsleyae
ENSDARG00000013997	ern1	100	81.302	ENSPMGG00000020442	ern1	95	79.818	Periophthalmus_magnuspinnatus
ENSDARG00000013997	ern1	100	81.432	ENSPFOG00000007378	ern1	91	81.153	Poecilia_formosa
ENSDARG00000013997	ern1	100	81.432	ENSPLAG00000014780	ern1	91	81.153	Poecilia_latipinna
ENSDARG00000013997	ern1	100	81.535	ENSPMEG00000016324	ern1	91	81.256	Poecilia_mexicana
ENSDARG00000013997	ern1	100	81.535	ENSPREG00000006286	ern1	91	81.256	Poecilia_reticulata
ENSDARG00000013997	ern1	100	82.420	ENSPNYG00000017929	ern1	94	82.154	Pundamilia_nyererei
ENSDARG00000013997	ern1	100	84.599	ENSPNAG00000029447	ern1	95	84.061	Pygocentrus_nattereri
ENSDARG00000013997	ern1	100	81.508	ENSSMAG00000015042	ern1	89	81.148	Scophthalmus_maximus
ENSDARG00000013997	ern1	100	83.247	ENSSDUG00000009098	ern1	90	81.672	Seriola_dumerili
ENSDARG00000013997	ern1	100	83.471	ENSSLDG00000023254	ern1	89	83.197	Seriola_lalandi_dorsalis
ENSDARG00000013997	ern1	100	82.798	ENSSPAG00000017539	ern1	89	83.598	Stegastes_partitus
ENSDARG00000013997	ern1	96	81.798	ENSTRUG00000001041	ern1	91	80.720	Takifugu_rubripes
ENSDARG00000013997	ern1	97	82.032	ENSTNIG00000017990	ern1	98	81.818	Tetraodon_nigroviridis
ENSDARG00000013997	ern1	98	82.113	ENSXCOG00000010330	ern1	95	81.508	Xiphophorus_couchianus
ENSDARG00000013997	ern1	100	81.366	ENSXMAG00000001310	ern1	91	80.777	Xiphophorus_maculatus